zgc:171482 (zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817)


Basic Information

Item Value
gene id zgc:171482
gene name zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15443065 ~ 15507712 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254556.1
ACATTCATGAAGTGTGGAGAAGAATcctcttttacatttttttaaaacataaacattacaaaaatgcagcaaaacaacaacaacaacaacataaacacaTGGCAAAACAAGTATTTCCAGTACTTTTAGACATAGtcgtgaaacatttttttttattatttaatgaagcGTAAATCCTTTGACCCTAGAACTGTGCTGTTATGGTTTTACACTTCTTGGAGGTGTGCTGTAAATACCCAGGTAGATACCAAGTATCACGCGATACATCTGGTACACCATATGCTGCCATCACTGTACCATGGCACCGTCACGCAGTAATACATTTACAACACCACAAAGTCACGCGTTACATAGACACACTTCTCAAGAGGGACGCCCGATATCGCGACGAGCCATGAGAATGATACCCGCGCGAGCacgcgtgtgtgcgtgtgtgtgtgcatgtgtgtgcggtGTAATCCATATCTCTGCTAGTAGTATCTCTGGATTACTGACGTGTGTGCCCGCGCTCTTATATCTGTGCGCTCTCGCTTTACGCGCAGTTTGATGGCGTCGCCGCGCGCTCCTCTCTGCGTTCTCCGATCGTCGCTCACCATCTCACGGTTTATGGACGGCGAGGACCAGATATCATGATAGCACATCGTCGGGGTTGGTTCTACAACATTTCCGCCAGAGTGTTCCGTGGAAACTGTGTCACCGCTTGAGCTCCGAACCGAGCCGTGAGAGATAAGAGAAGTTTGCCGGATACAGGTGCGATCTCTCTCTAACTCCAGCCGATGATCACAGACACAGATCTGGACTGCGGGATTCCAGTAGATCACATCAGATCCAGCGCAAGATGAAGTCTGCCGGAGCTGGTGATGAAGGACTCTTCACGGAGAGCTACTGTAACATCTGCAACGCTCAGCTGATCTCTGAGTCCCAGCGCGTGGCACACTATGAGAGCAAGAAGCACGCCAACAAAGTACGTCTGTTCTACATGCTCCACCCGGAAGATGGAGGTCCGCCATCCAAAAGACTGAGACCAGACAATCCGGACAGTGCAGAGAATGAAGTGGACAGAAACAAATGCTGCACGCTCTGCAACATGTTTTTCACATCTGCCATTGTGGCTCAGTCACACTACCAGGGCAAAACACACGCTAAGAGAGTTCGCTTGGTACTGGGGGAGACGCCAAGTCTTCCTACACCCACAGAGTCAGCGCCGCCAACCCCCCAGACAACAGACCCCCCTCCGTGGCAGCCGCTGGCCAATCACAGCGAGGCAGGAAAGTACTGCTGCTTGTGTGGCGCCTGGTTTAACAACCCACTGATGGCACAGCAACACTACGAAGGCAAGAAACACAAGAGAAATGCGGCACGGGCGCGACTGCTGGAGCAGCTGGCTGGCAGTCTGGATGCCAATGAAAGCACAGGCCTGCGCCGGAGTTACTCGTGCAGCGTTTGTAATGTGGTTCTGAACTCCATCGAGCAGTATCATGCACATCTCCAGGGCTCCAAACACCAAAACAACTCAGGAGCACATGGGTCTGGCCTGTTGTGATTACACATGCTTTATCTTCCAGGCAGGCCGACTCCGGCCTCGCTACATCACTCGACTGGGCTTTCACCTGAGCTCTGTTTGCCCGTCAGCACTCTTAAGGAGATTTTTAGTACGTGGCCAGCGGTCGGATAAGTCAGTGATTTAGTGCGGGGCGAGAGCAGGAGTGCTGACAGTATTGCGTTTTACTACAGACGGTGAGGACGGGGCACGTGAGAGCTCAGGATTCGGTGTTCGGTGACCCATTTTCTGGGTGTGACGATAATGTGAGTGAAGATACCTTTGTCTCACCCCGTGACTAAAATGGAAAAAGGGAGGAGGGATATAGAGGATGAAAGGAGACGGCATGAGAATGAGGTTatggaaggaggaggaggatggaaGCGAACTGTCGTGCTGATTGATTAGATGAGAGAGGTGTAATCGGAGCCCTTCGCGCTGATGTTTAGACCCTCTCCTCCTGCTATCGATCCCTTGGGCTGCCTGGAACAAGATAGGAGGTTCCAGCTCATTGGGCTCCCTCTACCTGTGTAATCACTCTCCCCAACAGCAGTCCCACTCCTCAGAGGAAACCCAGAAGACCGGGGCTGTGCTCTGGTGGAACAGAGCTGATCTGTTGAGACAAGACAAGCTCAGGCTTTTCAGCCCGTAACAAAAAACGACACAGTGCCTTGTCGGGATTGGGATAAGAGTGTTAAGCCATTATGTGCAGTTGAGGACTGTATTCAGTATGCAAGTACTATACAGGCTTGAATTtcatgtggttttgtttttcaaaaaaatgtaagaacgCAATTTGTGA

Function

symbol description
zgc:171482 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZMAT4 (zinc finger matrin-type 4).

NR:

description
zinc finger matrin-type protein 4 isoform X1

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254556.1 True 2342 mRNA 0.50 8 15443065 15507712

Neighbor

gene id symbol gene type direction distance location
slc35f3b slc35f3,LOC107747268,LOC107665565,LOC107664233,LOC107736862 coding downstream 72715 15319657 ~ 15370350 (-)
eys si:ch211-69e5.1,LOC107553185,LOC107736852,LOC107664247,LOC107747288,LOC107683858 coding downstream 655961 14630594 ~ 14787104 (-)
LOC122356920 NA coding downstream 824066 14616799 ~ 14618999 (-)
LOC122356917 NA coding downstream 827140 14614221 ~ 14615925 (-)
LOC122356918 NA coding downstream 829713 14610347 ~ 14613352 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040,LOC107564685 coding upstream 38874 15546586 ~ 15561557 (-)
crtac1b crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504 coding upstream 102154 15609866 ~ 15632570 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088 coding upstream 146753 15654465 ~ 15681394 (-)
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding upstream 193715 15701427 ~ 15710148 (-)
nkx3.3 nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953 coding upstream 236205 15743917 ~ 15748460 (-)
G94063 NA non-coding downstream 159010 15279407 ~ 15284055 (-)
G94016 NA non-coding downstream 447365 14980996 ~ 14995700 (-)
G94003 NA non-coding downstream 570051 14872432 ~ 14873014 (-)
G93905 NA non-coding downstream 1253161 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 1512771 13761046 ~ 13930294 (-)
G94132 NA non-coding upstream 96975 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 132563 15640275 ~ 15640633 (-)
G94199 NA non-coding upstream 254839 15762551 ~ 15762843 (-)
G94200 NA non-coding upstream 255712 15763424 ~ 15763745 (-)
G94232 NA non-coding upstream 399558 15907270 ~ 15907491 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other downstream 189708 15227332 ~ 15253357 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other downstream 343832 15024832 ~ 15099233 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 1278651 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 1360275 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 1531228 13910339 ~ 13911837 (-)
G94128 NA other upstream 56905 15564617 ~ 15583917 (-)
G94147 NA other upstream 134319 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 178558 15686270 ~ 15720816 (-)
nkx2.3 nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236 other upstream 244924 15752636 ~ 15755128 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other upstream 267065 15774777 ~ 15793540 (-)

Expression


Co-expression Network