cxcl18a.1 (LOC107707282)


Basic Information

Item Value
gene id cxcl18a.1
gene name LOC107707282
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11215240 ~ 11217428 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254570.1
attttcattGGTTGAATGTGTAGGAATCCTGCAGTTAGAACAGTTAATTCCAAATGGTCACAGAAAAGTGCGGGATCACATAGAAACTTTCTGAACTATACAACCACCGACAGAACAATAACATTCCAGACCCAAAACCAACATACACAAGGTAGTTGAGAAATCACCTCTCATTTACCTGAAATCATGTGACTCAAATCCTGCTTAATATGGCAAAACAGGAAATGCCTTAAGGAGGGAAAGTGAGGAAAAAGGAGAGTGCAGCTTTGTGCAAACAGACTCAAGAGACACTCTTGTCAATGACACAGCTTTGGAGAAATGGCTTTCAAGACCCTGCAAACAAGTTTTTGCCTGCTTCTCTTAATCTCAATTGGTTTACACTTCATCACAGGTAAAAGGACTGCTGCAATGTCCATCCGTGAAAAATGTGAGTGTGTTGAGGAAACTGGCTCAGtgcaatggaaaaaaattaaagactACAGAATCATACAGAAAGATCCTCTTTGCAACAAGGTTCAAATCATACTCCAGCTGTCAGAAAAACAGGTTTGTCTAAATGCAGACTCCAAGCAAGggaaaaaactgcaaaaatgctGGAAAAGGATTAAATTAAATCCACAGAGGAAGAAGGTCTGTCTGCAGCTCAAGAAGAATAGAccaaaaaagaccaaaaagacCAAAAAGCTGTAATTCAATTATCTTTACCTTTTCTGTATAAAAAGACAATGTGTCTTTTACAATTATTCTGACTGATCTTTAACATAGATggaatttgtatatattttgtactgCTATTTTCTAATAAAACCTTGTTTTGACATGG

Function

NR:

description
PREDICTED: C-X-C motif chemokine 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254570.1 True 823 mRNA 0.37 4 11215240 11217428

Neighbor

gene id symbol gene type direction distance location
LOC122356105 LOC107588620,LOC107707271 coding upstream 153 11213499 ~ 11215087 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding upstream 62793 11149996 ~ 11152447 (+)
zmiz1a zmiz1a,LOC107588626,LOC108443181 coding upstream 68614 11033947 ~ 11146626 (+)
rps24 rps24,LOC107673958 coding upstream 221928 10990562 ~ 10993312 (+)
qrfpra LOC107668764,LOC107673889,LOC107716286,LOC107564357,LOC107564360,LOC107588699 coding upstream 225506 10986085 ~ 10989734 (+)
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding downstream 69622 11287050 ~ 11302394 (+)
drgx drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892 coding downstream 86636 11304064 ~ 11309190 (+)
vstm4a vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767 coding downstream 111849 11329277 ~ 11337428 (+)
lrrc18a NA coding downstream 134544 11351972 ~ 11355204 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding downstream 161716 11379144 ~ 11388193 (+)
G92767 NA non-coding upstream 11556 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 193184 11004910 ~ 11022056 (+)
G92748 NA non-coding upstream 230595 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 231961 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 253544 10959420 ~ 10961696 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 150838 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 196795 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 291810 11509238 ~ 11509888 (+)
G92958 NA non-coding downstream 297049 11514477 ~ 11533930 (+)
G92962 rrp12 non-coding downstream 301192 11518620 ~ 11519343 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 246326 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 794814 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 965515 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1780635 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 2051126 9161517 ~ 9164114 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 38166 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 171957 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 354232 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 386269 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 1214491 12431919 ~ 12436643 (+)

Expression


Co-expression Network