trmt2b (trmt2b)


Basic Information

Item Value
gene id trmt2b
gene name trmt2b
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10913050 ~ 10914756 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254603.1
AAGAAAGTGGTGTCGTTACAGCGTCATAGCAGCTAAAGTTGTTGTGGGCACATGGAAAGGTACAAGGAACGATATTTGTTTAACCGGATTGACAGTTTACGCGTGTATGTGGTGaggaaaatatatatctaaatcaCTGCCGCGAAAATTTCATAACATTATATAGAGCCGTCTTTTGAGCGCGTGACCTCAGAAGCTCCATCGATTTCGCGTGCCAACGAAACAATGCGCGTACGCTTATCGTGGCTTCTGCTGAAACGAACAGTCGTTATACCAAAAATATGCTTCAGCTATTCTGTAGCAAGCCGCCGTGCCGCCAATATTGACTCGAGGCCTGTAAAGGCAAGAAAGGCACGGAGACCCCAACTCCCTGCTGACTGGCATACTCTCTCCTGGGAAGAGAGACTGGCTGATTCTGTGACTCCTCTGTGGAGAATGAGTTACGAGCAGCAGCTTCAGTGGAAACAAGAGCAGCAGCACAGGATCTTACTTGAGATGACAAAGCAACTAACTGGGGATTTAAAGCACTCTTTTTCAACTGACTTAAGTTTCCCCCTGCTTCCCATAGTAGCATCACCAGTGATTGATGGATACCGCAACAAATCAACTTTCTCTGTCAACATTGGGGTAGACGGCAATCCAAAAACTGTTGGATTTTATATCGGTAATAGTAAAGCAGGCAACATCGTCTGTGTCCACGGTGACCATCTCCCGAACATACCTTCGAAACACAGCATGGTTGCAAGGCACTATGAAGATTTTATACGCCTCTCGCCACTCAGACCGTGCATTTTATTTCACGACGGTGGTCACTGGAGAGAAATTACGATAAGGACAAATTCTGCCAGTCACACGATGGCCATAGTTTACTTCCACCCCCAAACCCTAACCCCTGAGGACATAGCCGTCCATAAAGCTGCTCTGGTGGAGTACTTCACGCAAGGTCCCGGAGCGGTTTGTCAGCTGGATTCCCTGTACTTCCAGGAGACCACAATGACCCGTTGCAGTCATGAACAATCCCCCTATCGGCTTCTGCACGGACGGCCTCATATCTTCGAAGAGGTGCTTGGCTTGAAGTTCCGCATTTCTGCCGATTCGTTCTTCCAGGTGAATCGGAGGGCGGCGGAGGCTTTGTACAAAACCGTCGCGGAGCTGAACGGGGAGCGCGTCGGGGGCACCCTGCTGGATGTCTGCTGCGGAACTGGAGCCATTGGCATCTCGTTATCACCGCAGACGGAGAGAGTCATTGGCATTGAGCTCATCGAGCAGGCGGTCGAGGACGCCAAGTTTAACGCAGCGCTAAACGGAGTTCATAATTGTGAATTTCTCTCAGGCAAAGCAGAAGCTGTCCTGCCAGATCTGTTGGCCTCTTTGAATAGCGACGGCGGGCTGACAGCCGTGGTGAATCCGTCCAGGGCTGGCCTACATTATCGAGTTGTCAGAGCCTTGAGGAACCACACAGCCATAAGGAGGCTTGTCTATATATCGTGCAAACCTTATGGGGAGGCAATGAGGAACTTTAGAGATCTGTGCAGTACAGGCTATAAGAGGAAGACCACTGGAGACGCCTTCAAACCAGCCATGGCCGTCCCTGTGGACCTGTTTCCACACACTACTCACTGTGAACTAGTGCTAGTGTTTGAGCGATAGTAGCTATTTCTGTTGTTCGTTCTGACTTGTTATTAAACAACAGtggaaaatgtttaa

Function

symbol description
trmt2b Predicted to enable S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity. Predicted to act upstream of or within methylation and tRNA processing. Orthologous to human TRMT2B (tRNA methyltransferase 2 homolog B).

NR:

description
PREDICTED: tRNA (uracil(54)-C(5))-methyltransferase homolog

GO:

id name namespace
GO:0008033 tRNA processing biological_process
GO:0032259 methylation biological_process
GO:0030697 S-adenosylmethionine-dependent tRNA (m5U54) methyltransferase activity molecular_function

KEGG:

id description
K15331 TRMT2B, TRM2; tRNA (uracil-5-)-methyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254603.1 True 1707 mRNA 0.49 1 10913050 10914756

Neighbor

gene id symbol gene type direction distance location
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding downstream 1221 10906055 ~ 10911829 (-)
wnt8b wnt8b,LOC107708332,LOC107588635,LOC107668784,LOC107716351,LOC107673931,LOC107585301 coding downstream 7136 10898368 ~ 10905914 (-)
hif1an LOC107707391,LOC107585304,LOC107588638,LOC107668772,LOC107673917 coding downstream 19098 10886804 ~ 10893952 (-)
cdhr1a LOC107588642,LOC107707459,LOC107683738,LOC107585311,LOC107673943,LOC107716342 coding downstream 210953 10669026 ~ 10702097 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding downstream 254141 10651830 ~ 10658909 (-)
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding upstream 36695 10951451 ~ 10955143 (-)
sar1ab sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926 coding upstream 40682 10955438 ~ 10958617 (-)
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding upstream 44685 10959441 ~ 10964398 (-)
zcchc24 zcchc24,LOC107564348,LOC106577169 coding upstream 238835 11153591 ~ 11185986 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding upstream 271682 11186438 ~ 11192124 (-)
LOC122356733 NA non-coding downstream 113186 10787586 ~ 10799864 (-)
LOC122356898 NA non-coding downstream 125546 10784852 ~ 10787504 (-)
G92788 NA non-coding downstream 128355 10784373 ~ 10784695 (-)
G92784 NA non-coding downstream 137551 10775195 ~ 10775499 (-)
G92779 NA non-coding downstream 150158 10762619 ~ 10762892 (-)
G92829 NA non-coding upstream 30448 10945204 ~ 10947731 (-)
G92836 LOC107668836 non-coding upstream 61777 10976533 ~ 10977459 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding upstream 71546 10986302 ~ 10986520 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding upstream 73658 10988414 ~ 10988695 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding upstream 74526 10989282 ~ 10993798 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 278484 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 721284 10174413 ~ 10191766 (-)
G92267 NA other downstream 1797499 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2865149 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 3096671 7809849 ~ 7816379 (-)
G92819 NA other upstream 10188 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 285796 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 610647 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 729174 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 856672 11771428 ~ 11799032 (-)

Expression


Co-expression Network