pcbd1 (pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445)


Basic Information

Item Value
gene id pcbd1
gene name pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9549733 ~ 9552495 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254617.1
CTTAGTTAATATTCATAAGTCGTCCCTTCGCCGTAGTAGGATTGGTAAGTTCACGCCGTGGAAGCAGGTTGAAATCCAGCTGCTTGCACGAGACCGTATCAGCGCTGCGAGCCACAGCACCCACAACATGGCTGGGAAAATCCAGACTCTTACTATGGAGGAGAGGGAGCACCTCCTGCCCATGATGAGGAATGCTCAGTGGGTGGAGGTGGTGGGGAGAGATGCCATTTACAAAGAGTTTCTCTTCAAAGACTTCAACCAGGCTTTTGGGTTCATGTCCAGAGTAGCACTGCAGGCTGAGAAAATGGATCATCACCCTGAATGGTTTAACGTGTATAATAAGGTTCAGATCACCCTCAGTACTCATGAATGTGGAGGTCTCTCGCAGCGTGACATCACGCTTGCAACCTTTATAGATCAGGCCTCTGTCCTCTGAATGGACCCCGTCACCTGACCACTTGTTAATCAACCTCTGTAGCCTGGAAACTGgaccaaaaatattgtttaactTCATTTACCACAGTTATCACTCTGTCAGTTTTGACTGTGTAAGGTCTGCCTGTTACGCATAATCATTTTCCAATAAGCATTAATAGAGAGATTTTCAGTCAGGAGAAATTTCAtcttaataatattacattcacacagtatataaacatactatccacctttttcttgaACGAGGAAGTAAGCCTATGGGTGAGGCTTCCGGTTCATTCGATGCTATAGGAAAATAACAATGTGCAGTAAACGGTAAAACTGTTTGTACTAGACACCAGTGTGTTCCTAATTaggataatacattaaaatcacaTGATAGGACACgccaattttcaatatcaagcaaCAAAACGAAATGTTTTGTACTACAAAAAATAACTGGACAAAAAGGTGGTGCCTTTTTTTCACCAGGAAAAGGTGGATATGTTGAGAGATGAGAATTGTTAGCACACTAAAGAGACCGGTTTAGCACTATCACTCTGTTCTAtggcttaaaatatattttttaagtaaatatacgGTGCCTTCTTTTCCATTTGATGTGTTCCAGCGATGACATGGTTAGTGCCTCAGTGAAGTGTATTAAACTGAATATTTGCCAA

Function

symbol description
pcbd1 Predicted to enable 4-alpha-hydroxytetrahydrobiopterin dehydratase activity. Predicted to act upstream of or within tetrahydrobiopterin biosynthetic process. Is expressed in lens; liver; and solid lens vesicle. Orthologous to human PCBD1 (pterin-4 alpha-carbinolamine dehydratase 1).

NR:

description
Pterin-4-alpha-carbinolamine dehydratase

GO:

id name namespace
GO:0006729 tetrahydrobiopterin biosynthetic process biological_process
GO:0008124 4-alpha-hydroxytetrahydrobiopterin dehydratase activity molecular_function

KEGG:

id description
K01724 PCBD, phhB; 4a-hydroxytetrahydrobiopterin dehydratase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254617.1 True 1103 mRNA 0.41 4 9549733 9552495

Neighbor

gene id symbol gene type direction distance location
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding upstream 58327 9482211 ~ 9491406 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding upstream 76199 9457557 ~ 9473534 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding upstream 92825 9451180 ~ 9456908 (+)
pkd2l1 pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815 coding upstream 106025 9436681 ~ 9443708 (+)
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding upstream 121596 9422476 ~ 9428137 (+)
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding downstream 15122 9567617 ~ 9568527 (+)
bcl11aa bcl11aa,bcl11a,LOC107666449,LOC107601892,LOC107655449,LOC107559339,LOC107743494 coding downstream 62532 9615027 ~ 9667838 (+)
fancl fancl,LOC107585345,LOC107718841 coding downstream 498592 10051087 ~ 10067172 (+)
LOC122356189 inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding downstream 741711 10294206 ~ 10297714 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding downstream 760919 10313414 ~ 10333604 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding upstream 69981 9479421 ~ 9479752 (+)
G92313 NA non-coding upstream 99044 9450446 ~ 9450689 (+)
G92147 NA non-coding upstream 274034 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 405222 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 451828 9050367 ~ 9097905 (+)
LOC122356835 NA non-coding downstream 18494 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 39924 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 171901 9724396 ~ 9727967 (+)
G92434 NA non-coding downstream 178230 9730725 ~ 9731002 (+)
LOC122356803 NA non-coding downstream 492286 10044781 ~ 10049442 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 115128 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 385619 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 460612 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 521824 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 809638 8739036 ~ 8740095 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 652618 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 863745 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1412360 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1661031 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1703099 11255594 ~ 11262620 (+)

Expression


Co-expression Network