pkd2l1 (pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815)


Basic Information

Item Value
gene id pkd2l1
gene name pkd2l1,LOC107666396,LOC107726939,LOC107743506,LOC107559329,LOC107655425,LOC107601815
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9436681 ~ 9443708 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254627.1
TAGAGACTCTTCTCCTCCAAAAGCTTCCCGTTAAATCCACCTCTTCATTCACCACAATGCAACGCCTCAATAACCGGGCAGAGAATCAGCTGGGCAGCACAGCGGCGTGCGAGATGGAAAACTTTGGGAAAGGAGGCTGGGTGAATCAGGCCTACAGCGGCTCTCCTGCGGCCCTCAGGCACCCCATCAGCACCGTGTATAACCCTCAGCCCGTGTTCCACAGCTCTCTGGAGAACACGAACCAGCTCAGTCTGCCCAACCCGTATCTAGCTGAAGATAAAGCGCGAGCAAACCCCTCAGAGGAGAAGAAGTCTGGATGCTGCTCTTTTCTCTTGAGAGCCGTCAAAGGACTGTGGGGAACAGCTCTAAGAAAGGACACGAAGGAGAATCCTGAGCTCAATGTCAAAGCAAACCTCAAAGAACTGCTCATCTACATTGTTTTCCTTGTGGACCTGTGCCTGTTGACCTACGGCATGACCAGCAGCGCCACCTACTATTACACGAAAGCGATGACCGATCTCTTTGTGAACTTACCTGGTGACAGTGGACTCAGCTTTTCCACCATCGGCAGCATGAATGATGTCTGGACATACATGGAGGGCCCGTTACTCGACAGCCTGTACTGGACAAAGTGGTATAACAACGAGCCTCTTCCAAATGAAAATCAATCCTTCATTTACTACGAGAACATGCTGTTAGGAGTCCCTCGCATTCGACAGCTCAAAGTGAAGAACAACTCCTGCAAGGTGCATCAAGACTTCCAGCAGGAGATCGCTGATTGTTTTGACGTGTACAGCGACAAGAAGGAGGATGACAGCGCGTTTGGACTGATCAACGGAACAGCCTGGCAGTACCACTCAGAAAAGGAGATCAAAGGTTCGAATCACTGGGGGTTACTGACCACATACAGCGGAGCAGGATATTATCAAGACCTGGCAAAAACCAAAGACGAGAGCGCGGCTATCCTGGCGGACCTCAAAGACTACCTGTGGCTCGATCGTGGAACTCGGGTTCTTTTCATTGACTTTACTGCATACAACGCAAACATCAATCTCTTCTGCGTTATACGATTAGTGGTTGAATTTCCCGCCACCGGTGGAGCAATTCCTTCCTACCAGATCCGTACTGTGAAGCTGATCCGTTACGTCACCACGTGGGATTTCTTCATCATCGGCTGTGAGATCTTGTTCTGCGTCTTCGTACTCTATTACATTGTGGAGGAGATTCTGGAATTCCGAATCCACAAACTGTCTCATTTCAACAGCATCTGGAACATACTCGATATAGTGGTCATACTGCTTGCTGTGGTGGCAATAGTCTTCAGTGCGTTTCGAACCATCAAAGTAGATAACTTACTTGGAAACCTTCTAGAACAACCTGACATCTATGCTGATTTTGAGTTTCTGGCATTTTGGCAAACTCAGTACAACAACATGAATGCAGtaaatttgttttttgcttGGATTAAGATCTTCAAGTACATCAGTTTCAACAAAACGATGACCCAGCTCACATCTACCCTTGCTCGCTGTGCATTAGACATCTTCGGATTCGCCATCATGTTCTTCATTGTGTTCTTTGCATACGCTCAGCTGGGTTACCTGCTCTTCGGAATGGAAGTTCAAACATTCAGCACATTTAACAAGTGCATTTTCACACAGTTTCGAATCATCCTTGGGGATTTTGATTACGACGCCATTGACAGGGCAAACAGAGTGCTTGGaccaatatattttttctcctaTGTGTTCTTTGTCTTCTTTGTGTTACTGAACATGTTTCTGGCCATCATCAATGACACGTACTCTGAGGTGAAGTCAGAACTCGCTTCTCAGAAAAATGAGTTCCAGATTGCAGATCTCATCAAACAGAGTTATGAGAGAACTTTCGtgaaactaaaacttaaaaaggaaaagatcTCTGATGTTCAGAAAGCCCTGGATTCAGGTTCGAGTGAGCTGCGGTTTAAAGATTTCAGGGATGCTTTGAAAGAAATGGGTCATGCTGACCATGAGATCTCAGCCGCTTTCTCCAGATTTGACCAAGATGGGAACCAGACTTTGGACATTCAGGAGCAGGAGAGAATGAAACGAGAGCTGGAGGAAAAAAGGgaaGCACTCAATAAAGAGCTTCGTAATCTTGAAAACAGCGTTGAGTCAGCAGAGGACCACAGAGAGAAGACAGTTCCTCCAGAGGCCTTTCAGAGGCTGGTTCACAAAGTTGCTCAGCTTGAAAATGCTGTGATCACTATATTGTCCAAAGTAGATGCTATCATGGAGAAAATGAGACTTCAAACATTCAACACAGACATGGATAGGCAGATGACTAGAGATGATGAATCAAGACCGGCTTCAGGAGGGAATATTCAAGTAAACCTGGAAAGAGCTTTGGCTCAGGGACCAGCACCCTGGTCCATAGCTGGCCCAATGGGGAATATGAGGAATCGTTTGTACCCAGACGTCGGATGGCCAGTCGTCACTGAGAACAGTAGTTCTGCACCTCAGCGCCACTGACGCATCAAAACCTGTTTCAAACTGACTAATAATTGGCTTCATTTAAGCCTGGTCTGTGGATAAACAGACTCAGAATGTGACCGTAGAGAGGAAGGTATTACTGTAGAATAGACGTAGTACTGTTACCAGCGGCACAGAAATGTATCAGTTCTCCACACTGAGTGTTTTACTTACAGTTACTGTGGTATTTGTAAGAGGTGAAAAAGAGGTAATACGATAGACATTTTGATTATCTTCCACTTTTAAGCTTGATTAGTGTGAGTCAGTGTAATTGATGTATTGCGTGTAAAATACACTCTCTTGAAACCGTATCAGGCTAATAATAACTATTCTTCAGGCTTTCCTTACTATTGAAGAATTCATTTTCTTGACTATTAGTTATGAAACAAATTCTCCTGCAATCTCATGGCTAAGATTCTTTCCAATCATATAGCATGGAAACTTCGCTGCGGGGCTACATTTAGTGAGAATAGAGTCAACGTGTTACATTTAACATATTGTTATGAAAGGTCATCATGCAATGTGTATTACGCTCTTTGGAAagttaatatatacttttaaagatGACTTCCTTAATTTCACTTTGATATGAATCtcttgtaaatgtattttatagtgAGAAACAGTGTATACACAGACTAGTATAGTTCTATACTAGCATAGTATAATCTGTAAAAgatgtttatatgtaatatttctcTATCCTAAGTGAAAataacaagcaaataaataact

Function

symbol description
pkd2l1 Predicted to enable calcium ion binding activity; cation channel activity; and muscle alpha-actinin binding activity. Acts upstream of or within mechanosensory behavior. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be active in membrane. Is expressed in nervous system; pharyngeal arch cartilage; pharynx; and spinal cord neural tube. Orthologous to human PKD2L1 (polycystin 2 like 1, transient receptor potential cation channel).

NR:

description
polycystic kidney disease 2-like 1 protein

GO:

id name namespace
GO:0070588 calcium ion transmembrane transport biological_process
GO:0050982 detection of mechanical stimulus biological_process
GO:0016020 membrane cellular_component
GO:0005509 calcium ion binding molecular_function
GO:0005262 calcium channel activity molecular_function

KEGG:

id description
K04990 PKD2L1; polycystin 2L1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254627.1 True 3248 mRNA 0.44 15 9436681 9443708

Neighbor

gene id symbol gene type direction distance location
si:dkey-51a16.9 si:dkey-51a16.9,LOC107559326,LOC107655434,LOC107743509,LOC107601881,LOC107666536,LOC108426796 coding upstream 8544 9422476 ~ 9428137 (+)
LOC122356913 LOC107559323,LOC107743586,LOC107666393,LOC107601813,LOC107726938 coding upstream 16206 9418159 ~ 9420475 (+)
LOC122357057 LOC107726934,LOC107666357,LOC107559322,LOC107601796,LOC107743586,LOC107601813 coding upstream 19824 9414341 ~ 9416857 (+)
calhm1 calhm1,LOC107726957,LOC107601812 coding upstream 22485 9412350 ~ 9414196 (+)
calhm3 calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949 coding upstream 24561 9409751 ~ 9412120 (+)
bag3 LOC107726946,LOC107666417,LOC107655437,LOC107743505,LOC107601798 coding downstream 7472 9451180 ~ 9456908 (+)
inpp5f inpp5f,LOC107726944,LOC107666413,LOC107743504 coding downstream 13849 9457557 ~ 9473534 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding downstream 38503 9482211 ~ 9491406 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding downstream 106025 9549733 ~ 9552495 (+)
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding downstream 123909 9567617 ~ 9568527 (+)
G92147 NA non-coding upstream 160982 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 292170 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 338776 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 471092 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 539772 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 6738 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 35713 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 127281 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 148711 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 280688 9724396 ~ 9727967 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 2076 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 272567 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 347560 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 408772 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 696586 8739036 ~ 8740095 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 761405 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 972532 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1521147 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1769818 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 1811886 11255594 ~ 11262620 (+)

Expression


Co-expression Network