six2a (six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704)


Basic Information

Item Value
gene id six2a
gene name six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6720061 ~ 6722866 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254638.1
AATGACAGCGTAACCATGGCAAATAATTTGACTAAAACTATTGTCTTATCCTCATCATCCCTGGGTCAGATaaccaaccaatcacagttcaCATAATCGCTTTTCTTGCCAGCttagaataatattattaaaacaagagAGCGAGGTCCTTCTTCGGGAGTGCGTTATGCTGAAACGACATAGAAGAGGTGGCGAGAGGCTCGCGCTGGAGGAACGACTTTCTCTCGTGTGCTTTAGATGGATATACGGTGTGTTATGCTTGCCTGAACGGATCTAAAGTTTTGCGCCTCTCTACCCCGGAGCGGGATTTCACTTCGTCTGCTCGAGAAGTCGTTCTAAATTTTTGGTCTCCCAAAGGGTTTGCTTAAAATCTGTCGAAGAACTGCCACCGCCGTCCTTAAAACAGACATAAGATCGAAAAGTGAAGGTTTATTCGCGACAAACCATGTCTATGCTTCCCACGTTCGGCTTTACGCAAGAGCAAGTGGCGTGCGTCTGCGAGGTCCTTCAGCAGGGTGGAAACATTGAACGTCTCGGGCGCTTCTTGTGGTCTCTGCCGGCTTGCGAACATCTCCACAAGAACGAGAGCGTGCTCAAAGCGAAAGCCGTGGTCGCTTTTCACCGGGGAAATTTCAGAGAGCTTTATAAGATCCTGGAGAGCCACCAGTTCTCCCCGCACAACCACCCGAAGCTGCAGCAGCTGTGGCTCAAAGCGCATTATATCGAGGCTGAGAAGCTCCGGGGCCGCCCTCTTGGGGCTGTTGGGAAGTACCGCGTCCGAAGAAAGTTTCCGCTGCCCCGCTCCATTTGGGACGGCGAGGAGACAAGTTACTGCTTTAAAGAAAAGAGCAGGAGCGTGCTGCGGGAATGGTACACCCATAATCCGTACCCTTCCCCGCGGGAGAAGAGGGAGCTAGCAGAGGCAACGGGGCTAACGACAACACAAGTCAGTAACTGGTTTAAAAACAGACGTCAACGCGACCGGGCAGCGGAGGCTAAGGAACGGGAGAATAACGAGAACTCGAACACAAACAGTCACAACCCGTTATCGTCTTCCATGAATGGAAATAAGACTATTTTAGGAAGCTCGGACGACGACAAAACGCCGTCGGGTACCCCCGACCACACCTCGTCCAGCCCGGCCTTGCTCCTCACGTCAAACCCGGGGCTTCAGTCCCTGCACGGCCTCGCGCCTCCACCCGGCCCCAGCGCCATCCCAGTGCCTAGTGCGGACTCCGTGCACCACCACCATTCGTTACACGACACTATACTGAACCCTATGTCATCAAACTTGGTCGACCTCGGCTCTTAAACACGTGGACCCTTTCCAAAGGACGCTTGTACATGAACGTTTAGAGTAAAACATCTCCAGACGCGTATGAAACTAAAGCAAACGAGACGTGGAACGGACAAAGAGAGTTGTGGATGTTTGTCGGCTGACCTCCTGGCAAAGCTGATATGGAGGGCCTTGATAGAGGTATTTTTCTAGAATGTAATGCCATGATCTATTGTTAATAAACATGCTAATAAACGTCTTAATTGTTGATAT

Function

symbol description
six2a Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within pronephros development. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in head mesenchyme; immature eye; intermediate mesoderm; and nervous system. Orthologous to human SIX2 (SIX homeobox 2).
six2 Enables sequence-specific double-stranded DNA binding activity. Involved in cell migration; cell population proliferation; and kidney development. Predicted to be part of chromatin and transcription regulator complex. Predicted to be active in nucleus.

NR:

description
PREDICTED: homeobox protein SIX2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0048793 pronephros development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19472 SIX2; homeobox protein SIX2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254638.1 True 1549 mRNA 0.51 2 6720061 6722866

Neighbor

gene id symbol gene type direction distance location
prepl prepl coding downstream 159400 6553488 ~ 6560661 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding downstream 275613 6433477 ~ 6444448 (-)
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding downstream 287033 6429382 ~ 6433028 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding downstream 456066 6254597 ~ 6263995 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding downstream 500305 6212541 ~ 6219756 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding upstream 65966 6788832 ~ 6840561 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 138422 6861288 ~ 6863797 (-)
dennd10 fam45a,LOC107711433,LOC107733722,LOC107585262,LOC107602482 coding upstream 144832 6867698 ~ 6871804 (-)
LOC122356744 rab11fip2,LOC107733785,LOC107666531,LOC107711431,LOC107585298 coding upstream 271286 6994152 ~ 7010113 (-)
fam204a fam204a,LOC107733786,LOC107711429,LOC102781047 coding upstream 333383 7056249 ~ 7071527 (-)
LOC122357105 NA non-coding downstream 16138 6693662 ~ 6703923 (-)
G91490 NA non-coding downstream 32766 6687077 ~ 6687295 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding downstream 181693 6536601 ~ 6538368 (-)
G91454 NA non-coding downstream 271635 6446498 ~ 6448426 (-)
G91420 NA non-coding downstream 427858 6290881 ~ 6292203 (-)
G91513 NA non-coding upstream 64401 6787267 ~ 6787607 (-)
G91574 eif3a,LOC107666466 non-coding upstream 156356 6879222 ~ 6879894 (-)
LOC122356287 NA non-coding upstream 294357 7017223 ~ 7045575 (-)
G91758 NA non-coding upstream 1255954 7978820 ~ 7980706 (-)
G91760 NA non-coding upstream 1261080 7983946 ~ 7984316 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 220488 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 323635 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 492789 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 646864 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 793384 5920502 ~ 5926677 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1086983 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1320699 8043565 ~ 8047901 (-)
G92267 NA other upstream 2392227 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3451547 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 3909384 10632250 ~ 10634566 (-)

Expression


Co-expression Network