vstm4a (vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767)


Basic Information

Item Value
gene id vstm4a
gene name vstm4a,LOC107588614,LOC107707245,LOC107673948,LOC107548636,LOC107668767
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11329277 ~ 11337428 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254641.1
CTAACTGGGAACAGAGCACGCACTGTTtcagattacacacacacacacacacacacacactgagagggagaaagagaaagaaaagaagaaaaaatctcAGGGACTCCTTTCTTTTCTTGACGTTTAGTTGGGTTTATGGAGCCTACGGGTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGAGCTTTTATTGGAGAGCTGAGTGTAGCTCTAAATGTGACTGTCACCCCAGGGCCAGTCAGCATGTGCATGGAGGGAGACAACATCACTTTATCCTGCTTAGTGTCTCAGAGAAAGAGAAGCAGCAGTGTCCTGGTGCTACGCTGGCTCTACTTCCCCACCCCTGAAGACGAGCACCTCGTGGTCAGGATGGGCATGAAGAAGAGCAAATATTATGGCAACTACAGCAAACATTTTTCCCAGAGCAAGTTCCACTTGTGGGAAGAAATGGACGGTCAGATTTACCGTTTGCTGATCCTGAATGTGTCCCTGGAGGACGGAGGCAACTATACCTGTAAAGTGCAGGAAATACGGAAGCACAGAAACAAGTGGAGGGCCTCGTCAAACGGAACAGGGAGCATGGAATTAAGAGTACATCATATACCAAGCACAGGAAAAGCTGATGTTATATGGCGCATGTTTGAAGATTTGTATCTGTGTGCTGTGCTCATCTGCTCTATCGGTCTGGTCTGTATGCTTGTCTTTGCCATGACTATCACATTTCAGCACCTGCAGCATAAACGAAGACTACGAGCCAGTTACTACCTTGTGAAGTGTCCTGAAAACAGCTCAGGAGAGACAGTTACCAGTGTGTCTAGCTCCTCTCCTGCAATGCACAGAAAAGAGAGACGGCACAAACCGCAGCTCAGAGACATCACTGAGCCACTACCACCACCACAAATACCTGCTAAAGcaccTGTACCAAGAAAGCCACGTAGGACCAAACTCTTAAAGGCACAACCTACAAAAATACCAAGGGTGGTAGACGACAGTCTGACATACGCAGAGCTGGAGCTGGTGAAACCGAAGCCTGAGCTGAAAACAGACTTGACTGGATGTGCACAACTTGAGCCTAATACACAATGCACGGGGACTGTATATGCCCAAATACTGTTTGTGGAGAAGcaagtgtaaatatgtacagtatagaGTTTCATACCAAAATTATTTAtgagattaaaatattttgacttaCATACTGATGTTCTGTTATGTCACGTGTACTAGTATTACTAGTATAAAATCTGTCATACAACAgcagcattttcttttctttatataaatgtgGGCACATTTATGTACCTATGAATTTTGAGACCTTCTTTTCTTTACCCAAAAGTAAGGATTGCATTATGGATTTAATTCCAaacatgcataatttaattatgctattttgtaaaatatgtatcaatttcatttgttgttatattgtataaaataaagattactCCTCTAAAAGCAGAGGATGACACATGA
>XM_043254642.1
TTCTAACTGGGAACAGAGCACGCACTGTTtcagattacacacacacacacacacacacacactgagagggagaaagagaaagaaaagaagaaaaaatctcAGGGACTCCTTTCTTTTCTTGACGTTTAGTTGGGTTTATGGAGCCTACGGGTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGAGCTTTTATTGGAGGGCCAGTCAGCATGTGCATGGAGGGAGACAACATCACTTTATCCTGCTTAGTGTCTCAGAGAAAGAGAAGCAGCAGTGTCCTGGTGCTACGCTGGCTCTACTTCCCCACCCCTGAAGACGAGCACCTCGTGGTCAGGATGGGCATGAAGAAGAGCAAATATTATGGCAACTACAGCAAACATTTTTCCCAGAGCAAGTTCCACTTGTGGGAAGAAATGGACGGTCAGATTTACCGTTTGCTGATCCTGAATGTGTCCCTGGAGGACGGAGGCAACTATACCTGTAAAGTGCAGGAAATACGGAAGCACAGAAACAAGTGGAGGGCCTCGTCAAACGGAACAGGGAGCATGGAATTAAGAGTACATCATATACCAAGCACAGGAAAAGCTGATGTTATATGGCGCATGTTTGAAGATTTGTATCTGTGTGCTGTGCTCATCTGCTCTATCGGTCTGGTCTGTATGCTTGTCTTTGCCATGACTATCACATTTCAGCACCTGCAGCATAAACGAAGACTACGAGCCAGTTACTACCTTGTGAAGTGTCCTGAAAACAGCTCAGGAGAGACAGTTACCAGTGTGTCTAGCTCCTCTCCTGCAATGCACAGAAAAGAGAGACGGCACAAACCGCAGCTCAGAGACATCACTGAGCCACTACCACCACCACAAATACCTGCTAAAGcaccTGTACCAAGAAAGCCACGTAGGACCAAACTCTTAAAGGCACAACCTACAAAAATACCAAGGGTGGTAGACGACAGTCTGACATACGCAGAGCTGGAGCTGGTGAAACCGAAGCCTGAGCTGAAAACAGACTTGACTGGATGTGCACAACTTGAGCCTAATACACAATGCACGGGGACTGTATATGCCCAAATACTGTTTGTGGAGAAGcaagtgtaaatatgtacagtatagaGTTTCATACCAAAATTATTTAtgagattaaaatattttgacttaCATACTGATGTTCTGTTATGTCACGTGTACTAGTATTACTAGTATAAAATCTGTCATACAACAgcagcattttcttttctttatataaatgtgGGCACATTTATGTACCTATGAATTTTGAGACCTTCTTTTCTTTACCCAAAAGTAAGGATTGCATTATGGATTTAATTCCAaacatgcataatttaattatgctattttgtaaaatatgtatcaatttcatttgttgttatattgtataaaataaagattactCCTCTAAAAGCAGAGGATGACACATGA

Function

symbol description
vstm4a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

NR:

description
PREDICTED: V-set and transmembrane domain-containing protein 4 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254641.1 True 1489 mRNA 0.43 8 11329279 11337428
XM_043254642.1 False 1455 mRNA 0.42 8 11329277 11337428

Neighbor

gene id symbol gene type direction distance location
drgx drgx,LOC107588616,LOC107708289,LOC107668808,LOC107548637,LOC107673892 coding upstream 20087 11304064 ~ 11309190 (+)
ercc6 ercc6,LOC107588615,LOC107668807,LOC107757150,LOC107708008,LOC107673869 coding upstream 26883 11287050 ~ 11302394 (+)
cxcl18a.1 LOC107707282 coding upstream 111849 11215240 ~ 11217428 (+)
LOC122356105 LOC107588620,LOC107707271 coding upstream 114190 11213499 ~ 11215087 (+)
ppifa ppifa,LOC107668776,LOC107588732,LOC107564349,LOC107673899,LOC108442288,LOC108263515 coding upstream 176830 11149996 ~ 11152447 (+)
lrrc18a NA coding downstream 14544 11351972 ~ 11355204 (+)
si:ch211-223a10.1 si:ch211-223a10.1,LOC107707219,LOC107757147,LOC107673964,LOC107548634,LOC107588731 coding downstream 41716 11379144 ~ 11388193 (+)
ptpn20 ptpn20,LOC107707196,LOC107668813,LOC107673913,LOC107757144,LOC107588696 coding downstream 88986 11426414 ~ 11454711 (+)
gdf10a gdf10a,LOC107708281,LOC107668782,LOC107588730,LOC107673887,LOC107757113 coding downstream 139780 11477208 ~ 11480996 (+)
antxr1d antxr1d,LOC107673963,LOC107708254,LOC107668779,LOC107588727,LOC107757100,LOC107548602,LOC108263270 coding downstream 149344 11486772 ~ 11507939 (+)
G92767 NA non-coding upstream 125593 11202654 ~ 11203684 (+)
LOC122356274 NA non-coding upstream 307221 11004910 ~ 11022056 (+)
G92748 NA non-coding upstream 344632 10984238 ~ 10984645 (+)
G92746 NA non-coding upstream 345998 10982940 ~ 10983279 (+)
G92731 NA non-coding upstream 367581 10959420 ~ 10961696 (+)
G92907 wdfy4,LOC107707224,LOC107757102,LOC107673934 non-coding downstream 30838 11368266 ~ 11368907 (+)
G92923 NA non-coding downstream 76795 11414223 ~ 11462116 (+)
G92952 NA non-coding downstream 171810 11509238 ~ 11509888 (+)
G92958 NA non-coding downstream 177049 11514477 ~ 11533930 (+)
G92962 rrp12 non-coding downstream 181192 11518620 ~ 11519343 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 66657 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 111102 11213526 ~ 11218175 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other upstream 360363 10964855 ~ 10968914 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 908851 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 1079552 10205113 ~ 10249725 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 51957 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 234232 11571660 ~ 11592600 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other downstream 266269 11603697 ~ 11604852 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 1094491 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 1164957 12502385 ~ 12535071 (+)

Expression


Co-expression Network