snapc1b (snapc1,LOC107726585,LOC107602935)


Basic Information

Item Value
gene id snapc1b
gene name snapc1,LOC107726585,LOC107602935
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14601464 ~ 14606081 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254643.1
AAATGTGAGCGAGACGAAAACTCAAACAAACTCACAGAAGGTGGAGAAGTCCAGCAGCAGTGCTGTTTTatctctttttaaaacataagcAATGGATGCTTTGTGGTGATTACTAGGCAGGATGGATCATTTCAGGGAACCGGTAAAAACAGACTGTGAAGAACTACTGGGTCGTTTTCAGGCGACCGAGTCAGTTCGGTACGAGCAGTTTGTAGAGATCTGGAGAGACATGGATTTCAGCAGCATCTTCCACGGTAAACCGGAGCCAAATGAGAGAAGGCACTTCGCTCGTCTGATTCTGTCTGTGGTGTCCCCATACTTTTTTCCTCCATACACGTTCCAGATCAGAGTGGGGGCCCTTTATCTTCTGTACAGCCTCTTCAACACACAACTCGCCACACCTAGAGAGAAGATCCGCATTGCTCTGAAGGACTGGAAGGATGTTATGCAGTTTCAGAAGGACGCAGTGAATGCTCAACATTACGATGTGGTTTACGTCTTCAGAAAGCTCTTGTCAGATAAAGCTTTCTACTTCACTGCCATGCCAACACCGCTCAATTTCAGGATAAAGAGGGAAGatggaaagaagaagaaaatctgTGAAGAGTTTGTTGATCCGCCAACACGTCCTCAGGAAGTCGTAACCACAGATGTACTAGAGGAAATTGCAAATATCCACGAACATTATGAAGGTGTGAAGAAAGCCATTTTCGCTGAACCAGACCCAAATCTGAATATTGTACAGCAAAACCTGATTCCCAAACTAAACAGTGCCATCCTCACTTATTCCAGCTGGCAGATGAATCGTACAaCATCCGAGCAGCAGGATGCTGGAGAAGGGCCTTCAAATCAAGAAAGCTCCAGCAGAGCCCAGCTGTTAGCGTCGATCAAATCCAAATCATATGGACAAGTCGTAGAGGCTTCAAAGGCCCGAcgtcacagacagacagaattgGTCTCAGCAGCTGGACCAGACATTGCGTTAAATGTgccttcaaaaaagaaaagattccCGTCACTTAAAACGCGCACTCAGTTACGATTCAGAACTCAGGGAAATGAGAGTGAGGGCTCAAATTTGACCCGACTGTGGTGTTTGAGTTCAGTGAAAGAAGAGATAGAACCAGaaaaaaagaagagaaaattcAACTGGAACCCTGACAAAAGCAGCGATCCCACATAGCATTAGTCAGAGCCGTCTGGATGGAGTGTGATGGGCGGGCCGCCTCGTGTTAAAAGCTAGTGCGATTTGTGCTTTGAGCTccagtttcatttaaattgttttatgtaattGTAAACGTTGCTGCTTTTGGGTTAAAAGGGCAGTGAATGTAAGTTGCTTTTAAGACAgctctttcttctttttgtacTTTAGTATTTGGCTTTAATGTGAAATTAGTTTAGTGttctttaatagtttttagATCAACGCGTTCTTAAGCAGCTATTTAAAATGGACagtttctacattttattttcttttaaatgattttaatgatttagtcATTCtgaatcttttttgttttagtctaCTTTCTTTCTATTGTGCCAGCTAATACATCTCTCACACATCGAGAAAAGA

Function

symbol description
snapc1 Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Located in nucleolus and nucleoplasm.

NR:

description
snRNA-activating protein complex subunit 1

GO: NA

KEGG:

id description
K15208 SNAPC1; snRNA-activating protein complex subunit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254643.1 True 1582 mRNA 0.42 10 14601464 14606081

Neighbor

gene id symbol gene type direction distance location
syt16 syt16,LOC107726601,LOC107602979,LOC107683639,LOC107553223 coding downstream 1201 14576907 ~ 14600263 (-)
sgpp1b sgpp1,LOC107726595,LOC107602978,LOC107683631,LOC107553224 coding downstream 25116 14563389 ~ 14576348 (-)
wdr89 wdr89,LOC107602933,LOC107683929,LOC107553226 coding downstream 39086 14557244 ~ 14562378 (-)
ppp2r5eb ppp2r5eb,ppp2r5e,LOC107736817,LOC107683621 coding downstream 45613 14536645 ~ 14555851 (-)
kcnh5b kcnh5b,kcnh5,LOC107736800,LOC107683602,LOC107654906,LOC105897728 coding downstream 76662 14490704 ~ 14524802 (-)
ifi27.1 NA coding upstream 1299 14607380 ~ 14608640 (-)
LOC122356918 NA coding upstream 4266 14610347 ~ 14613352 (-)
LOC122356917 NA coding upstream 8140 14614221 ~ 14615925 (-)
LOC122356920 NA coding upstream 10718 14616799 ~ 14618999 (-)
eys si:ch211-69e5.1,LOC107553185,LOC107736852,LOC107664247,LOC107747288,LOC107683858 coding upstream 24513 14630594 ~ 14787104 (-)
G93905 NA non-coding downstream 411560 14187539 ~ 14189904 (-)
G93879 NA non-coding downstream 671170 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 912838 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 935204 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 937553 13661750 ~ 13663911 (-)
G94003 NA non-coding upstream 266351 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 374915 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 673326 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 998606 15604687 ~ 15605713 (-)
G94145 NA non-coding upstream 1034194 15640275 ~ 15640633 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 437050 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 518674 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 689627 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 696762 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 883150 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 418751 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 621251 15227332 ~ 15253357 (-)
G94128 NA other upstream 958536 15564617 ~ 15583917 (-)
G94147 NA other upstream 1035950 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1080189 15686270 ~ 15720816 (-)

Expression


Co-expression Network