LOC122356151 (cox5b2,LOC107689371,LOC107689755,LOC105923605,LOC102227912,LOC106952680,LOC108240632)


Basic Information

Item Value
gene id LOC122356151
gene name cox5b2,LOC107689371,LOC107689755,LOC105923605,LOC102227912,LOC106952680,LOC108240632
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 20621247 ~ 20623139 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254647.1
GTCACTCCGTTGACTCTCACCGACTCTGGTTCACGGAGTAGCGCGCGCACAGAAGACCGAAAGTTTTCAAGTCGACATGGCCAGCAAAGTCCTCCTGAGGGCCTGCCGCCTGACTCTGACGGCGAGACGGAGCGTTTTAATGAAAACGCCTCGGCGTGCCATGGCCAGCGAAGGTATTCCAACGGATGAAGAGCAGGCCGCGGGGCTGGAGAGACGCGTCCTGCAGGCCATGAAGAAAGGCCAGGATCCATACAGCATATTCAAGCCAAAGGAATACACTGGAAGCAGAGACGACCCTCATATCGTTCCCAGCATCAATAACAAGCGGCTGGTGGGCTGCCTctGTGAGGAGGACAACACGGCCGTGGTTTGGTTCTGGCTTCACGAGGGAGACGCTCAGCGCTGTCCTTCCTGCGGCTCGCACTACAAACTCGTCCATCACGAGCTCCCCCACtgaacgaacacacacacacacacacacaacctaaACCTCCGCAGAAACCGCTGCGTGCCTATGCCAAACATGTACAGAGtcgaaaataaaataaatttaatacaatCAA

Function

symbol description
cox5b2 Predicted to enable cytochrome-c oxidase activity and metal ion binding activity. Predicted to be involved in mitochondrial electron transport, cytochrome c to oxygen. Predicted to be located in mitochondrial inner membrane. Is expressed in brain; gill; heart; liver; and skeletal muscle.

NR:

description
PREDICTED: cytochrome c oxidase subunit 5B, mitochondrial-like

GO:

id name namespace
GO:1902600 proton transmembrane transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005740 mitochondrial envelope cellular_component
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254647.1 True 563 mRNA 0.55 4 20621247 20623139

Neighbor

gene id symbol gene type direction distance location
gpr137ba gpr137b,LOC100001171,LOC105902257,LOC103372511,LOC100698978,LOC102208596 coding upstream 101163 20505423 ~ 20520084 (+)
ggps1 ggps1,LOC107728322,LOC107730383 coding upstream 379326 20220280 ~ 20241921 (+)
LOC122356779 egln1a,LOC107690805,LOC107728333,LOC107730384,LOC107557733,LOC107667047,LOC107564238 coding upstream 625627 19979791 ~ 19995620 (+)
LOC122356808 sipa1l2,LOC107667119,LOC102793238 coding upstream 815639 19689750 ~ 19805608 (+)
msh6 msh6,LOC107725009,LOC107588437 coding upstream 1115818 19494929 ~ 19505429 (+)
LOC122356546 LOC107565068 coding downstream 30945 20654084 ~ 20661380 (+)
dntt dntt,LOC107689760,LOC107562388,LOC107689364 coding downstream 72850 20695989 ~ 20725867 (+)
hs3st1l1 hs3st1l1,LOC107720583,LOC107750130,LOC107565063,LOC107686529,LOC107562391,LOC108426770 coding downstream 241846 20864985 ~ 20910740 (+)
LOC122356250 adgra1,LOC107567015,LOC107750141,LOC107570923,LOC107663568,LOC107720869 coding downstream 419762 21042901 ~ 21118201 (+)
LOC122357030 cfap46,LOC107744991,LOC107568822 coding downstream 758338 21381477 ~ 21392621 (+)
G95416 NA non-coding upstream 653 20620058 ~ 20620594 (+)
G95395 NA non-coding upstream 43285 20576984 ~ 20577962 (+)
G95386 NA non-coding upstream 49665 20570460 ~ 20571582 (+)
G95384 NA non-coding upstream 53901 20542165 ~ 20567346 (+)
G95381 NA non-coding upstream 58922 20535061 ~ 20562325 (+)
G95423 NA non-coding downstream 11558 20634697 ~ 20635126 (+)
G95554 NA non-coding downstream 380904 21004043 ~ 21140875 (+)
G95588 NA non-coding downstream 495138 21118277 ~ 21119915 (+)
LOC122357032 NA non-coding downstream 736212 21359351 ~ 21368683 (+)
LOC122357035 cfap46,LOC107744991 non-coding downstream 774999 21398138 ~ 21400378 (+)
dnajc12 dnajc12,LOC107728315,LOC107750135 other upstream 1626 20617183 ~ 20619621 (+)
G95327 NA other upstream 127071 20366225 ~ 20494176 (+)
G95239 irf2bp2a,LOC107690807,LOC107730382,LOC107557731,LOC107728327,LOC107564236 other upstream 519127 20077285 ~ 20102120 (+)
G95223 NA other upstream 617245 19947530 ~ 20004002 (+)
LOC122356529 LOC107667070,LOC107589360,LOC107719701,LOC107676301,LOC107733333,LOC107725060,LOC107570100 other upstream 953806 19618012 ~ 19667441 (+)
G95558 NA other downstream 328917 20952056 ~ 20956174 (+)
G95598 adgra1,LOC107689349,LOC107567015,LOC107570923,LOC107750141,LOC107663568 other downstream 555713 21178852 ~ 21180678 (+)
LOC122357027 LOC107567957,LOC107705465,LOC107564371,LOC107574018,LOC107697810,LOC103910014,LOC107573027 other downstream 873602 21496741 ~ 21506599 (+)
LOC122357026 NA other downstream 1159831 21782970 ~ 21833016 (+)
G95864 NA other downstream 1659724 22282863 ~ 22284050 (+)

Expression


Co-expression Network