cfap43 (cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315)


Basic Information

Item Value
gene id cfap43
gene name cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9103033 ~ 9116177 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254652.1
gtgtaccATACATACGATATgtcatattgttatattatgtgATGTTTATTATATGTGATATTGTATTATGTGTAGCACAACCTTAAAACAAATTAAGTAATGTAATTGATAAAGTTAATCAACATGAAATGTTTGGTTCTCAAGTCTGCGTGCTTTGGGTTGCTATGGAAACACATGCAAGCTCAGAGGGTGAGCTGACGGATTCAAATGGATGTCCTGGGAAACTTGGAAGTTCGTTGGGTGCAAGGAATCAACAATGGCACATTTAGATTTGTCGACAAGAAAACAACATGCTACACCTGCGGGAACTTCGTTGTTTTCCTTAATATGGAAACTAAGTCGAAGAAGACACTGCAGAGTCCTGGTTCTGGTATTGGGGCCTTTACAGCCAGTGGTCATCGCAAGTGTCTTGCCTTCTCTGACCTCAAACTCTATCCTTCCATTTTTGTCTACAACTTTCCAGAGCTTGAGCAGATGTGTGAATTGAAAGccACAGCTAAACTTGGCTATAcagctttggcactgtgtgaCACTGGCCCTTATTTAGTCTGTGCTTCCTCCATGCCCGATCACACCATCTCATTATgGAACTGGGAGAGCAGCACTCCTCTTTGTAACCATCCACTCTTTAGAGAGGATGTCACAGCATTGGTTTTTAACCCCATGAACTGGTGTCAAATTGGTGCTATCAATGTGAGGTCCCTTACTATCTGGAACGTTGAAAGATGTGACAACTATCATTTGATGAAGCCTAGTGCTGTCGACCTCCCCACAGCCGATGGTTCAGTCACTGAGTGTAAAGCAAACCTGTCTTATATGCTCAGTAGGAAGTTGACACACTTAGGTCCTCAGATGCCCATTTCAGCAATCGCTGGACTGAGTGGAGACAGAGCTGATGATTTTGTGcctttgaaagaaataaatccaAAACTGTGTCCAAGTGCCATCTGCTGGTCAACTTCTTCTGACCTATATGTTGGTTCCAGGGAAGGTTTCCTGCTTTGTGTGAATTCTGATACTTTGCTTGTCTCTGTCCTGTGCAAACCTCAAACTGAATCGAATCCCACAGATGAGAGTAAAACATCCCCTCAAGAAGGCAGCTTCCAGAGCTTAGTACTACAAGactgtaatatttttgctgCAGGAATGGAAGGCATTTTAcgaaatatacaaattaaaggAAACAAATTGGAGGTAGTGCAGACTTGGGCTTTGGATGAGGCAGCCTCGACTATATGCTTTTCTCCTGGTGGTGAGACACTGCTGATAGTTTCTACTACAGGCTGTGTTTACAGATTAAAACCACTGgtgaatgacagaattgtcaaaGTTCTGGATGTACTCTGTGGAGACTTTGTGGCTGTTGCACCATTATATACTGACAGAAGCATTTGTTTGTCAGTCAGAGAAGCAGGAGACGTACAGCTGTGGGCCCTGGATGATGGACTTTGCATGGGGTCCATCTCTCTGCAAATACATGTGACCAGTTTGGCATGCTGCCCTATAGCACAGTATGTTGTTGTAGGAACAGGCACTGGAGACGTTCTGTTTGTGGAAAtgaccacaaaacaaaaccccAGACTAGTTCACAGAGTTCATCTCTACCATGTCCCTGTAGACCATTTGGTGTTTGATCAAGGTGGAAACTTCTTAATCACCGGAGCCTCAGATGCAAGGATTTTTGTACTGAACGCAAGGCCATCAAAAGGATTTGAAATTATTGGATGGATTGAGGCTCCAGGTGCCATTGTAAACCTTTCCACCCAGTACCTCATGGAAAGTAAACAGGTCAAAGTGCTGGTGCTATGCagcaagacagagagagaaataaaagaggGGAATGTGCTTGTGTTACTGACGTTGTTGGTGCAACAACTTACAGACTCGCCAGGTAGTGTGGATGTCTATGGCCGTCTGTGTAAAGATGTCCTGCACAGCTGCCTATATGAGATTCCTCACACTCTCTGCTCTTGTGTCCTGGCCATAAACAAGATATTTGGTTACTGCCAACAGAGAAAAGCCTTGCAAAGTTTTTGTATCCCTGAGAATGAAGCAAATGCACATGAAGCAGTTCAGCTGATCCTAGAAAAGGAGGCAGGGGGGCACTTACTGAGTCCTGCTTTTCTCCAGCTCTCCCCACATCAAACCTGGCTGGCAACAGTTGGCAGGGATGGACTGCTGCGCATTTGCGATGTCTCAACAATGGACAGGTGTGTGCAGCTTCAGTGCCACTCATGTTGGCAGGGTGGAGTCGGATCTGTTTGTTTCACCCCAGACAGTCAGACCCTCATCACCTCGGGCCTGAGGGACGGCTCACTTGTCTGCAGCAGGCTCAGGTTAAAGCTTTCTGGGGCCGGCAAAGCAAATGCAGCTACCCAGAATGCTCAGTTAGTTGCTGATTCTTTTGAATCAGTGGTATCCTCAGAGAATACGGTTCTCTCTGAAATGACTTCGTGGGATCCACAGACACAATCCCTGACCAGATGTTCATCCTTTCATACAGGAGAAGGAAAGATGAGTCATGAAGCTGAACAAGTGGAAAACTATTTTGTGTCCCCAGCTAGTTCTACATGGCTTGATGGAAAACTAGATGCGGTTCTCCAAGAGGAGACCCAGCAGTAtgcagagacaaaaaaaaccctaagaaaaaacatcaaagttCTTCGTGACACAATCAAAGCAATGATGCAAGAGAATGAGAGCCTGCCAGACATGGAGAAACTTGAGCACCAGGAATTTAACCTGGATGTAGAAGAGCAACAGAAGATGCAGCTTGAGGGAAAACAGGAAGTTACTAGGGTGAGGAAAGAGATTGAGATGGAGAATCTGGCTAAGTGCTATCAGAGGGAGATCTTGAAGAAAGAATGCTGGGATTCCATGCAAGTCAAAGGCAAAGCCATTAAGGCCTTTCATTCAGAAAACGAGGTGAAGAACTATCCCATGAAGGAACGCACTGAAAAAGAACTTGAAGAGCTTCAAAGGATTGAGACCATGAGGCAGATTGAACAGGAAAATTCACATCTTCAAGAgatgattttaaatgcaatctCTGGAGAGGAAGAAGACGCAGAAGACGGTGAGAGCGAGAGTCCTGCTCTGACTGGCAGTCTGAGTGCTCTGTACGGAGGCGTCAATCCTTCTCTCTACAGCCAGTTTAACTTACACATCAGAGAGCAGAAAATCAACCAAATCACTTTGTTAAAGGATGTCATCTACAAAGTGAAGAGCACGTTCAACAAAGAATTTGAGGCAGTTTACATGCAGAAGGAACAAGAAATCCATCGTCTTAGAGAGAAGAACAAGCGTATCTCTGAAATTATGACCGAACTGGACCTCAGCGAGACCCTGTGGGAGCCTAGTCTCACGGATAACGAGTGTCCTGAGAGAGCTCTTACTGTGACCGACTCAGAGatcAAGGTTGAGAAATACCTCACCCCCGAACAGAAAGAAATAGAAGAACACCTAAGAGAGGAAGACGAACGGCAAAGGCTTGCGGCCAAGTCTGACAACATGAGAGATCAAGCGCTAGGTGTTATGATGGGTGGAGTTCTGGAGCTTAAAAAAGAGGATGTGCTGAGGGTGGAAGTAACTCAGCCTGAATTCATATCCAAACCTGAGATGCAGTGgacagaagaagagagaaagagcttCAAAGAGTTTGAGAAAAAAGCAAAGGAGCTCAGtgaggagaaagagaaatacAGAAAAACACTAGAGTCAGAAATGAAGAAACTACTGACTTCTGTTAAAGAGGCGACCCAGATGTTTGATGAAAAACTCGCAAAGCTCTTTGAAAGGAAAGTGAAATCAGAGATGGTCACATACCAAGAGGAGCTCAAAATTGCGAATCTGGTTCACTCCATTCAAACCGAAGAAGAGATCCTAAGCAGAGAGAAACAGCTGAGCCTTAAACTTGAAAAGGCACGAATTGTAAAGAATGAAATTGGGGAGGAATTGAAAAAACACAGGGAGACTGTTGATGAGTTTAGAGAGGAGTATGATAATACAGTCACTGAGGACAAActtcTTGACAAAGGATTTCGCAAAGAGTTTTTTGACGTTCCTGGACACATAATTGACCAGCTCTATAAGCTTTACAAACGCAGACCAAGAGCTCAGAGGATAAAAACACAGACTGAAAATAACCAGTTTAAAGAGGGAGTGCTATTAGGAACAGCACCATCTGATGGACTCTCTCTGATGATGAAGGCCATGGAAGAGTTGGATGCTCCAGAGAACATGCCAGAAGGATTAGATCCGTTTGTGTGGGAGAGGTTTTGCCTGGCCAGGAGGGTCAAAGTGGAAAGTGAACAAAAGGTCAAACTAAAGGCATTGACCTTGGCAGAGATGCATGCTTTTCTTCAGAGGAGAACAGATGAGGACGAGAAAGCTcagcttgaaataaaaaatcttattgaTGAACTTAATAGCATCTGTGAAGAAAAGATGAGGTTTCGACTAGACAGTATGGTGCAGATCGTTCTACAGCAAGGTCAGGTGGAAGTGGAGGCTGGAGACTTCATCGCTGACTATACTAATGCTCTGCTAATACACCGCAAAGTAATCGAGGACCTCAACAGCACCATCAGGGCTTTAGGAGATCAGAAGATCACCAGCATGGTGGAGTGTAAAGACTTCCGCAAAGGGATCATACAGCAGGAGTGGGATCACAGGAGAATGAGAATGCAGCTGGAGGATCTCAGCAATAAAGCCAGAGACATACAGACCCTGCGCATCACTCAGGAGATTCAAGATCACCTAAATGAAACAGGTAATGACAACAGGGCGTCAAAGCAGCTTGCAACTCTGGAGACGACTTTTGATTTACAGAAAACGACTCATCGAAAAAAAGTTGAGGCTTGCAAGAAACAGATAAAGCACCTGGACAGACAAGGTGTGCAAATGCAAGAGAAGAACGCAGCCCTCGACCTGAAAGTGGCTGACATGGAGATAACTGTTGGAGAgcaaagaaatatttatgagGCTGTTGCAATGGGAGAAAAGCAGGAGACCGAGGCAGAGAAGAACTACCAAGATATCATCTTGAGAAAGAAGCTGTTGAACATAGCTGGAGCACAATCTGAAGAGATACTCATACTGCGAGCCGAGGTTGAGAGACTGCGTAAGAAGAACTTCCCATCTCTTTCTCAACTAAACTATAACTGATGCAGGACACAT

Function

symbol description
cfap43 Predicted to be involved in sperm axoneme assembly. Predicted to be located in cell projection; cytoplasm; and cytoskeleton. Predicted to be active in axoneme. Human ortholog(s) of this gene implicated in normal pressure hydrocephalus and spermatogenic failure 19. Orthologous to human CFAP43 (cilia and flagella associated protein 43).

NR:

description
cilia- and flagella-associated protein 43 isoform X4

GO: NA

KEGG:

id description
K24223 CFAP43, WDR96; cilia- and flagella-associated protein 43

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254652.1 True 5178 mRNA 0.44 38 9103033 9116177

Neighbor

gene id symbol gene type direction distance location
adam8a adam8,LOC107725440,LOC107666510,LOC107743615,LOC107676563 coding upstream 22289 9072842 ~ 9080744 (+)
msx3 msx3,LOC107743518,LOC107552925,LOC107601809,LOC107725487,LOC107666509 coding upstream 34289 9066080 ~ 9068744 (+)
echs1 echs1,LOC107601864,LOC107666378,LOC107676592,LOC107743519,LOC107725439 coding upstream 79347 9021295 ~ 9023686 (+)
lgalslb lgalsl,LOC107601863,LOC107676594,LOC107666541,LOC107552938 coding upstream 82150 9013992 ~ 9020883 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding upstream 94689 8975089 ~ 9008344 (+)
col17a1b LOC107667282,LOC107743515 coding downstream 4171 9120348 ~ 9137429 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding downstream 43470 9159647 ~ 9160722 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding downstream 50201 9166378 ~ 9169605 (+)
LOC122356812 LOC107725429 coding downstream 53102 9169279 ~ 9170253 (+)
ap3m1 LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495 coding downstream 222101 9338278 ~ 9342544 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 5128 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 137444 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 206124 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 311981 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 313832 8788997 ~ 8789201 (+)
G92111 NA non-coding downstream 24040 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 147887 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 334269 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 363244 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 454812 9570989 ~ 9583671 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 13912 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 75124 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 362938 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 419981 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 792209 8306486 ~ 8310824 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 45340 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 314001 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1088936 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1300063 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1848678 10964855 ~ 10968914 (+)

Expression


Co-expression Network