sfr1 (LOC107601867,LOC107725495,LOC107666553)


Basic Information

Item Value
gene id sfr1
gene name LOC107601867,LOC107725495,LOC107666553
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9116205 ~ 9117372 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254653.1
ATGACGATAAAATAAGTGGCTCTTGCACCAATTTCAAAACATCAGAGTTCGTACTGATAACTTTACTGCCGTGAAGATCAGATTTATCTAGATTTCGCTCCGATTGTATTTTTACGACAGTTATGTAGCCGTTTTCTCCTCTTCATAGCGACCTTATGTGGTGTGAATCATGGAGACCACCCCGATAAAACTGACACCAGCTAACCTGAATGAAAACACACCAAATAGTGTTCAGTCTTCTTCAAGCAGGTCAAGCGCTGCCAAGCCCATGAGCTCCTCACTGAAGGAGAAGTTAAAAAGATCGCGCCACTCATTCAGATCCCCCCTCGGTGTGGTTAAACGATTAAAAATAGAAGATGACGGTCAACCGGGAGACGACACGGATGTCAATCGGAATAATGTGAGGGAGCAAAGAGACCGTTCACATCACACAGCTGAGCCTGCACAAAAAGACCCTGCTCGGCAGTGTGAGGAGCTAAGGAAAGCAGTGAAGGAGAAATCAGAAACCTTGAGGAGATTAAAGATGGCCAAGATGTATAGAAAAAAGAACGATCTGACCCAGCTACAGAGGCTCGTAGACAAATGGAGATCCTGTGCTCAGTCTGTGCTGTGTGAATTACAGAGTGAGTTACCCTCCGAGGGAAAACAAGTCCCTCTGTCTCAGCTTATAGACAGCTTAGGGTTAGATGACAAAATACTACACTTTGACAGGACAGAGGAAGACTTCACGGACAACTGAAACTCGTTGTACTGTGctcattttattcagaatatttaaatatccttAAGAAGTCTGTTCAGAAAAGGTTGTTCATTAATGCATTCAGACAGGGTGATTATTCAGATTTATAGGTGGAACCGATAAAAGACATTGTGAATTTTGTTAGGTTTATTCaacttattgttatttattacacattttcttGTGTTCTCATGTCACATCTGtgtattgaaataataaaatttttcaaa

Function

NR:

description
swi5-dependent recombination DNA repair protein 1 homolog

GO:

id name namespace
GO:0000724 double-strand break repair via homologous recombination biological_process
GO:0032798 Swi5-Sfr1 complex cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254653.1 True 972 mRNA 0.41 3 9116205 9117372

Neighbor

gene id symbol gene type direction distance location
erlin1 erlin1,LOC107725471,LOC107666491,LOC107601865,LOC107743516,LOC107676597,LOC108426813 coding downstream 13501 9095701 ~ 9102704 (-)
znf511 znf511,LOC107725486,LOC107666508 coding downstream 43869 9069481 ~ 9072336 (-)
si:ch211-217g15.3 LOC107676570,LOC107743520,LOC107725431 coding downstream 86436 9028351 ~ 9029769 (-)
slc1a4 slc1a4,LOC107725464,LOC107552941 coding downstream 143864 8964148 ~ 8972341 (-)
cep68 LOC107725463,LOC107666566,LOC107601859,LOC107743522,LOC107676572,LOC107552940 coding downstream 152582 8957273 ~ 8963623 (-)
slka LOC107667283,LOC107666433,LOC107725454,LOC107552933,LOC107601868 coding upstream 20117 9137489 ~ 9158550 (-)
kat6b kat6b,LOC107601873,LOC107552931,LOC107725428 coding upstream 57551 9174923 ~ 9203419 (-)
adka adka,LOC107601874,LOC107666490,LOC107743514,LOC107655429 coding upstream 90174 9207546 ~ 9337672 (-)
vcla vcla,LOC107666493,LOC107726962,LOC107655431,LOC108426801 coding upstream 225081 9342453 ~ 9377449 (-)
plaua LOC107666402,LOC107726940,LOC107601811 coding upstream 265024 9382396 ~ 9386719 (-)
G92266 LOC107667278 non-coding downstream 2045 9113737 ~ 9114160 (-)
G92265 NA non-coding downstream 2907 9112907 ~ 9113298 (-)
G92264 NA non-coding downstream 3616 9112295 ~ 9112589 (-)
G92263 NA non-coding downstream 7844 9108070 ~ 9108361 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding downstream 93998 9021810 ~ 9022207 (-)
G92270 NA non-coding upstream 2881 9120253 ~ 9120479 (-)
G92271 NA non-coding upstream 4748 9122120 ~ 9122350 (-)
G92274 LOC107666432 non-coding upstream 9188 9126560 ~ 9126858 (-)
G92276 NA non-coding upstream 15727 9133099 ~ 9133475 (-)
G92277 NA non-coding upstream 16780 9134152 ~ 9134485 (-)
G92267 NA other downstream 654 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 1068304 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1299826 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2616632 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2719779 6358201 ~ 6396426 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1057041 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1514878 10632250 ~ 10634566 (-)
G92819 NA other upstream 1807572 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2083180 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 2408031 11525403 ~ 11532457 (-)

Expression


Co-expression Network