zgc:123321 (LOC107582562,LOC107733692,LOC107690194,LOC107678492,LOC107708471)


Basic Information

Item Value
gene id zgc:123321
gene name LOC107582562,LOC107733692,LOC107690194,LOC107678492,LOC107708471
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5076696 ~ 5079826 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254657.1
TATTAATAGCTTCTCATGCACACATACAGCAAAACAGCTGCTCGGTGACCAAGCAAAGACTCAGTACAAGATCTTCAAATCAAACCCTGACTTTAAAGAAGGCAGAATGGGAGACTTTCAAAACTTTGAACAAGACTTCTATCAGTCTGGATATTATATGGATGGACAGCAAGAGGATGCATATGGCTATGATCCAGCCTACGTCAATCCAGACTATAATGAAGCCGATAATTCCACACATTTAGCAAATGAATACACCACTACGGCATCTTATACCGGACAGGTGTATCAGCCTGGAGCGCCACCGGAGCAAACAGAATATATGGACTCATACGAGGAAGAACCACCGCTCCTAGAAGAGTTGGGCATTAACTTTGACCATATCTGGCAGAAGACTCTGACTGTGTTAAATCCACTGAAGCCCGCGGATGGCAGTATTATGAATGAGACAGACCTCACCGGGCCCGTTCTCTTCTGCGTTGCACTGGGAGCCACATTACTGATGGCAGGGAAAGCACACTTTGGGTATGTGTATGGCATCAGTGCTCTGGGGTGCGTGGGGGTGTACATGCTGTTGAACCTGATGAGCAGTTACAGCATATCCTGTGGATGTGTGGCGAGTGTGCTGGGATACTCTCTCCTCCCCATGGTGGGACTCTCTGCCTTTGCTGTTCTGTATTCCCTTCAGGGGCTCTTGGGAACACTGTTGGCCTTGTTTGTGATTGGCTGGTGCAGTCTATCAGCTTCTAAGATCTTCAGCTCCACTCTTGACATGAGTGGGCAGCAGCTGCTGGTGGCCTATCCCTGTGCTCTCCTGTACGGGGTCTTCGCTCTCCTTACTGTCTTCTGAAAGCTATTCTCGACAACCGTCTCTCTAAGATCAGATGATCAAATCCAGTTGCACGTAATTCACAGCTTGTCACAGTTGCTGCAAATGAAGGTTACTTTACAATTTTGTCAACAAAACTCGAGCTgggttttcaaaataattttgatattggaatgcatgcaaaaagaaaatgtaataaaaaggttgg
>XM_043254658.1
TCATGCACACATACAGCAAAACAGCTGCTCGGTGACCAAGCAAAGACTCAGTACAAGATCTTCAAATCAAACCCTGACTTTAAAGAAGGTAAGAAGGCAGAATGGGAGACTTTCAAAACTTTGAACAAGACTTCTATCAGTCTGGATATTATATGGATGGACAGCAAGAGGATGCATATGGCTATGATCCAGCCTACGTCAATCCAGACTATAATGAAGCCGATAATTCCACACATTTAGCAAATGAATACACCACTACGGCATCTTATACCGGACAGGTGTATCAGCCTGGAGCGCCACCGGAGCAAACAGAATATATGGACTCATACGAGGAAGAACCACCGCTCCTAGAAGAGTTGGGCATTAACTTTGACCATATCTGGCAGAAGACTCTGACTGTGTTAAATCCACTGAAGCCCGCGGATGGCAGTATTATGAATGAGACAGACCTCACCGGGCCCGTTCTCTTCTGCGTTGCACTGGGAGCCACATTACTGATGGCAGGGAAAGCACACTTTGGGTATGTGTATGGCATCAGTGCTCTGGGGTGCGTGGGGGTGTACATGCTGTTGAACCTGATGAGCAGTTACAGCATATCCTGTGGATGTGTGGCGAGTGTGCTGGGATACTCTCTCCTCCCCATGGTGGGACTCTCTGCCTTTGCTGTTCTGTATTCCCTTCAGGGGCTCTTGGGAACACTGTTGGCCTTGTTTGTGATTGGCTGGTGCAGTCTATCAGCTTCTAAGATCTTCAGCTCCACTCTTGACATGAGTGGGCAGCAGCTGCTGGTGGCCTATCCCTGTGCTCTCCTGTACGGGGTCTTCGCTCTCCTTACTGTCTTCTGAAAGCTATTCTCGACAACCGTCTCTCTAAGATCAGATGATCAAATCCAGTTGCACGTAATTCACAGCTTGTCACAGTTGCTGCAAATGAAGGTTACTTTACAATTTTGTCAACAAAACTCGAGCTgggttttcaaaataattttgatattggaatgcatgcaaaaagaaaatgtaataaaaaggttggt
>XM_043254659.1
TTAATAGCTTCTCATGCACACATACAGCAAAACAGCTGCTCGGTGACCAAGCAAAGACTCAGTACAAGATCTTCAAATCAAACCCTGACTTTAAAGAAGAATGGGAGACTTTCAAAACTTTGAACAAGACTTCTATCAGTCTGGATATTATATGGATGGACAGCAAGAGGATGCATATGGCTATGATCCAGCCTACGTCAATCCAGACTATAATGAAGCCGATAATTCCACACATTTAGCAAATGAATACACCACTACGGCATCTTATACCGGACAGGTGTATCAGCCTGGAGCGCCACCGGAGCAAACAGAATATATGGACTCATACGAGGAAGAACCACCGCTCCTAGAAGAGTTGGGCATTAACTTTGACCATATCTGGCAGAAGACTCTGACTGTGTTAAATCCACTGAAGCCCGCGGATGGCAGTATTATGAATGAGACAGACCTCACCGGGCCCGTTCTCTTCTGCGTTGCACTGGGAGCCACATTACTGATGGCAGGGAAAGCACACTTTGGGTATGTGTATGGCATCAGTGCTCTGGGGTGCGTGGGGGTGTACATGCTGTTGAACCTGATGAGCAGTTACAGCATATCCTGTGGATGTGTGGCGAGTGTGCTGGGATACTCTCTCCTCCCCATGGTGGGACTCTCTGCCTTTGCTGTTCTGTATTCCCTTCAGGGGCTCTTGGGAACACTGTTGGCCTTGTTTGTGATTGGCTGGTGCAGTCTATCAGCTTCTAAGATCTTCAGCTCCACTCTTGACATGAGTGGGCAGCAGCTGCTGGTGGCCTATCCCTGTGCTCTCCTGTACGGGGTCTTCGCTCTCCTTACTGTCTTCTGAAAGCTATTCTCGACAACCGTCTCTCTAAGATCAGATGATCAAATCCAGTTGCACGTAATTCACAGCTTGTCACAGTTGCTGCAAATGAAGGTTACTTTACAATTTTGTCAACAAAACTCGAGCTgggttttcaaaataattttgatattggaatgcatgcaaaaagaaaatgtaataaaaaggttggt
>XM_043254660.1
CATACAGCAAAACAGCTGCTCGGTGACCAAGCAAAGACTCAGTACAAGATCTTCAAATCAAACCCTGACTTTAAAGAAGGTAAGAAGAATGGGAGACTTTCAAAACTTTGAACAAGACTTCTATCAGTCTGGATATTATATGGATGGACAGCAAGAGGATGCATATGGCTATGATCCAGCCTACGTCAATCCAGACTATAATGAAGCCGATAATTCCACACATTTAGCAAATGAATACACCACTACGGCATCTTATACCGGACAGGTGTATCAGCCTGGAGCGCCACCGGAGCAAACAGAATATATGGACTCATACGAGGAAGAACCACCGCTCCTAGAAGAGTTGGGCATTAACTTTGACCATATCTGGCAGAAGACTCTGACTGTGTTAAATCCACTGAAGCCCGCGGATGGCAGTATTATGAATGAGACAGACCTCACCGGGCCCGTTCTCTTCTGCGTTGCACTGGGAGCCACATTACTGATGGCAGGGAAAGCACACTTTGGGTATGTGTATGGCATCAGTGCTCTGGGGTGCGTGGGGGTGTACATGCTGTTGAACCTGATGAGCAGTTACAGCATATCCTGTGGATGTGTGGCGAGTGTGCTGGGATACTCTCTCCTCCCCATGGTGGGACTCTCTGCCTTTGCTGTTCTGTATTCCCTTCAGGGGCTCTTGGGAACACTGTTGGCCTTGTTTGTGATTGGCTGGTGCAGTCTATCAGCTTCTAAGATCTTCAGCTCCACTCTTGACATGAGTGGGCAGCAGCTGCTGGTGGCCTATCCCTGTGCTCTCCTGTACGGGGTCTTCGCTCTCCTTACTGTCTTCTGAAAGCTATTCTCGACAACCGTCTCTCTAAGATCAGATGATCAAATCCAGTTGCACGTAATTCACAGCTTGTCACAGTTGCTGCAAATGAAGGTTACTTTACAATTTTGTCAACAAAACTCGAGCTgggttttcaaaataattttgatattggaatgcatgcaaaaagaaaatgtaataaaaaggttggt

Function

NR:

description
protein YIPF7-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K20363 YIPF5_7, YIP1; protein YIPF5/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254657.1 True 1037 mRNA 0.46 6 5076697 5079826
XM_043254658.1 False 1033 mRNA 0.46 6 5076696 5079813
XM_043254659.1 False 1032 mRNA 0.46 6 5076696 5079824
XM_043254660.1 False 1020 mRNA 0.46 6 5076696 5079804

Neighbor

gene id symbol gene type direction distance location
pomk pomk,LOC107733691,LOC107582561,LOC107678554,LOC107567859,LOC107708470 coding downstream 2741 5070925 ~ 5073955 (-)
wdr32 wdr32,LOC107733687,LOC107582526,LOC107708468,LOC107690155,LOC107678556 coding downstream 6503 5064298 ~ 5070193 (-)
slf2 LOC107690156,LOC107582525,LOC107678590,LOC107567840 coding downstream 22654 5040564 ~ 5054042 (-)
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding downstream 36187 5008572 ~ 5040509 (-)
ninl ninl,LOC107708420,LOC107589549,LOC107699311,LOC107727377,LOC107582480,LOC107678585 coding downstream 120903 4931419 ~ 4955793 (-)
bbof1 LOC107690193,LOC107582564,LOC107733688 coding upstream 622 5080448 ~ 5085525 (-)
alms1 LOC107690154,LOC107733682,LOC107582553 coding upstream 6011 5085837 ~ 5097829 (-)
loxl3b loxl3b,LOC107690148,LOC107708481,LOC107678544,LOC107733697,LOC108263239 coding upstream 56206 5136032 ~ 5152932 (-)
pank2 pank2,LOC107733768,LOC107690147,LOC107708483,LOC107582531,LOC107678547 coding upstream 73492 5153318 ~ 5158423 (-)
mavs NA coding upstream 78771 5158597 ~ 5165274 (-)
G91025 NA non-coding downstream 111737 4964602 ~ 4964959 (-)
G91022 NA non-coding downstream 117285 4958383 ~ 4959411 (-)
G90846 NA non-coding downstream 243552 4829751 ~ 4833144 (-)
G90842 NA non-coding downstream 325728 4750432 ~ 4750968 (-)
G90785 NA non-coding downstream 491735 4560776 ~ 4584961 (-)
LOC122356716 NA non-coding upstream 48686 5128512 ~ 5129707 (-)
G91066 NA non-coding upstream 50525 5130351 ~ 5130949 (-)
G91085 NA non-coding upstream 181239 5261065 ~ 5262123 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding upstream 651430 5731256 ~ 5732678 (-)
LOC122356110 NA non-coding upstream 847167 5926993 ~ 5929491 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 296964 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 387528 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 1021283 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 1120741 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1641116 3422753 ~ 3435580 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 840676 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 981859 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1140349 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 1278375 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 1373705 6453531 ~ 6499573 (-)

Expression


Co-expression Network