bbof1 (LOC107690193,LOC107582564,LOC107733688)


Basic Information

Item Value
gene id bbof1
gene name LOC107690193,LOC107582564,LOC107733688
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5080448 ~ 5085525 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254662.1
GACAACAGGCGTACACAAACTAATCCTGAGGGGAGATCGTTGAACGGCGCCGATAAAAGCACAAGAAATGCCggttaaaaaaggaaagaagggaaagaaagcaaagggaaaaggaaagaaagatggCAAGCAAGAGTCAAAGCGAGATAAGGAGTCTGATGTAGAGAGGGCGAAAGCAAACGCGGCTCTGTGGGAGGCCAGGTGTGATTTGACGGAGACTTCGCGCGTGGAGTACCGTGAAGCGGCCCGAAGACTGAGCAAAATCAACCAGCAGCTCACTGATGTACAGAACAACACTGAGAAGAGCAGCATCGAGGTCATCGCTGTTCTCAGGAGCAAAGACGTGAAAAACGAGGAGAAGATAATGGCACTGGAACAACAAATAAAGCTCGAGAAAACAAGGGCTTCTCAGGAAAAGGTGAATTTGGCCTCTCAGTACACGCTAAAGATCAATGAGCTGGAGGAGAAGTTTCAGAAGAGGTCTAGCGAGTTTGACGTCATTCAAGAGGAGCTTAAGATCATCAATGACTTCCTTAAGAAAAAGCCTCAAATGGAGCAGGAACTCAAAAATATGAAAGAAACTATGGACAATGCAGATCTAGAACACAAGAAAACACTTGCAAGAATGGAGCAAAAGTTCTTCAATAATAAGGTTCATCTAGAGAAAGAAGCGGAGCAAAAGATTGCTGTGCTTGCAGAAAGAGCTCACAATGAAGCCATCATACAGCTGGATGACGCATCTCGCTCGATGTTCAAGGAGAATGTGCGTCTCAACAAGGCATTGGGTTACCACATCAAAGAAGTGGAGGATCTGCGGAAGAGAAATGCAGCGCTAGCAGAAGAGAACAACATCCTTAGTCTGCAAAAGGAGATGAGTCTGGACACCTCAAACGAGACCGTGTCTAAGCTTGCAGCCCAGCGGAACACAGTCTCTGGTCTGAGGGCGAAGGTGTTCACACTGGAGCAGGCCTTGGCCAGCATGGTATCTGAGTTTGAGTCGAAGAAGGCTGATATCAAGCAGCGTGCTGCTGTCCGGTCTCAGGCCGGCGGTGTGGAGCTGGACAAACTGCAGAAGCTCCTGAGCGTACGGGACAGGGAGCTGAGTCGAGTAAAGAGAATAGCCCGCAGCGCAGTGGAACAACGCTCAGACATGGAGGTCCTCTTCCATGAGGCTCTGAACCACGTGAAGCAGGAGATGTTGATGCACAGGCAGGAAGCGGAAGTGAATCGTAGCAAGCGGATGGATGAGATCCTATCAGGCAGAGCGGAGAACGATCACATTCACACCATCAACAAAACATCCCACAGCACTTCCAGTGGTACAGATGGGGCTGAAAAAGGCCATCTGAAGAAAGCCAAAGTGAACATATCAGAGATGACCTGGGATCAAAGAGAGAGAGTTCTTAGACTGCTCTTTGCTAAAGTGAATAGCTTGAAATCAAaGAAATCGATTCATGCTCCAGCTCTGACTGATTCTGAAGGGAACCGGTGTAGCAGCAATCCAGGAAATGAAGAAGAGGAATCCCATGCGACTTTTTTGACCCAGGCGGCAGTTTCCAGCATGAGCTCCAGTGGAAACTCCAGTGCTCTGCCAGACCTGTAGACCATCTGAGCTCATCACGAAGTATAAGTTAAACGTTGCGTATCAGCTATGAAATACCAGTAAGTGTTCAGAAGTGTCTAACCTACAACTCAAAAAACCTGCCGTGGCATTGAAGTTTAGACATGAGGGAATATTACCAAAATAAGATTAACGGAAGACTTAAAATGTCTTGGAATAAATACACCCacaatatattgcaaaaaaaacaaacaaatcaaacagtatttattataaaa

Function

NR:

description
PREDICTED: basal body-orientation factor 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254662.1 True 1839 mRNA 0.46 12 5080448 5085525

Neighbor

gene id symbol gene type direction distance location
zgc:123321 LOC107582562,LOC107733692,LOC107690194,LOC107678492,LOC107708471 coding downstream 622 5076696 ~ 5079826 (-)
pomk pomk,LOC107733691,LOC107582561,LOC107678554,LOC107567859,LOC107708470 coding downstream 6493 5070925 ~ 5073955 (-)
wdr32 wdr32,LOC107733687,LOC107582526,LOC107708468,LOC107690155,LOC107678556 coding downstream 10255 5064298 ~ 5070193 (-)
slf2 LOC107690156,LOC107582525,LOC107678590,LOC107567840 coding downstream 26406 5040564 ~ 5054042 (-)
sema4ga sema4ga,LOC107690158,LOC107582524,LOC107733683,LOC107678493,LOC107708465 coding downstream 39939 5008572 ~ 5040509 (-)
alms1 LOC107690154,LOC107733682,LOC107582553 coding upstream 312 5085837 ~ 5097829 (-)
loxl3b loxl3b,LOC107690148,LOC107708481,LOC107678544,LOC107733697,LOC108263239 coding upstream 50507 5136032 ~ 5152932 (-)
pank2 pank2,LOC107733768,LOC107690147,LOC107708483,LOC107582531,LOC107678547 coding upstream 67793 5153318 ~ 5158423 (-)
mavs NA coding upstream 73072 5158597 ~ 5165274 (-)
LOC122356801 LOC107582566,LOC107690192,LOC107733726,LOC107567849,LOC107708397 coding upstream 82386 5167911 ~ 5169077 (-)
G91025 NA non-coding downstream 115489 4964602 ~ 4964959 (-)
G91022 NA non-coding downstream 121037 4958383 ~ 4959411 (-)
G90846 NA non-coding downstream 247304 4829751 ~ 4833144 (-)
G90842 NA non-coding downstream 329480 4750432 ~ 4750968 (-)
G90785 NA non-coding downstream 495487 4560776 ~ 4584961 (-)
LOC122356716 NA non-coding upstream 42987 5128512 ~ 5129707 (-)
G91066 NA non-coding upstream 44826 5130351 ~ 5130949 (-)
G91085 NA non-coding upstream 175540 5261065 ~ 5262123 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding upstream 645731 5731256 ~ 5732678 (-)
LOC122356110 NA non-coding upstream 841468 5926993 ~ 5929491 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 300716 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 391280 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 1025035 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 1124493 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 1644868 3422753 ~ 3435580 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 834977 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 976160 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 1134650 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 1272676 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 1368006 6453531 ~ 6499573 (-)

Expression


Co-expression Network