LOC122356174 (polr1c)


Basic Information

Item Value
gene id LOC122356174
gene name polr1c
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24298935 ~ 24302415 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254672.1
TTCTGACCTCTACCGGTGCAAGAGAGTTATGATAACAAAGATGGCGGCGCCTATGAGCAACGTGGATGAAATTCGTGATAGAGTAATATTGGGTGAATTTGGCgtaaaaaatGTCCATACTACAGATTATCCAGGAAATTATCCCGGGTACGATGACACATGGGATTTGGAAAAGTTCAAAAAGAATTTCCGGATCGATGTAAATCATTCGGATGAGAACATGTTGGAGTTTGATATGGTCGGAATAGACGCTGCCATCGCCAATGCTTTTCGCCGCATATTACTGGCCGAGGTCCCGACAATGGCCATCGAAAAAGTCTTCATTTACAATAACACATCAATCATTCAGGATGAGATTCTAGCTCATAGACTTGGTCTTGTGCCCATTAAAGCAGATCCTCGTCTTTTTGAGTACAGGAATCCGGAGGATCAGGAAGGCACCGAAATTGACACAATTCAACTTCAGCTGAAAGTAAAATGCACCAGGAATCCCAGAGCCCCTAAAGACTCTTCAGATCCCAAGGAGTTATATCTCAATCACATGGTCTACTCAGGTGACATAAAATGGCTCCCAATTGGAAACCAAGCCGATGTGTTTGCAGATGCCAAGATTGGTCCTGTGCATGGGGACATTCTCCTGGCACAACTTCGACCAGGCCAGGAACTTGATATAGTCATGCACTGTATCAAAGGAGTAGGCAAGGATCATGCCAAGTTTTCTCCTGTGGCCACTGCAAGCTACAGACTTCTTCCTGAAATCACATTATTACAGCCCATTGAGGGAGAACAGGCAGAGAGGTTAAAGAGCTGCTTCTCACCGGGAGTTATCGAGATACAGAATGTGACCGGAAGGAAGGTGGCTAAAGTTGCCAACAGCCGTTTAGACACATGCAGCAGAGAAGTTCTTCGGCATGATGACTTGAAGAACTTGGTGAAACTGGGCAGAGTGCGGGATCATTTCATATTCTCAGTCGAGTCCACTGGGATCCTCCCCGCTGATGTCCTGGTTACTGAGGCCATTAATGTCCTCATCTCTAAGTGCCAGAAGTTTCTCACAGAGCTTGAAGCGGCAGAAATGAACTAGATGGAAGAAAATAAGGCCAGTCGCACTAGTCACACAAGTCATGGAATTGGTTTGCTGACACTGTATGTAGCTTTCAgcttcagctaaaaaaaaaaactccttttaCAAGTGTGAATTCATACAAATTCCATTAAGAAACTTAAGGCCGTATAACATTCtggagatttattttttaaggaaattTTGTTTAAGATGTCCAGCTGTAACAAAATGTAGTTATGTAAGTCACATATTTGACACAACacattttgacatatttatgtttttccatGTATATTAAACTTTTGCTGTTGACAAAGA

Function

symbol description
polr1c Predicted to enable DNA binding activity and protein dimerization activity. Predicted to contribute to RNA polymerase I activity and RNA polymerase III activity. Acts upstream of or within cartilage development; embryonic viscerocranium morphogenesis; and ribosome biogenesis. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex and RNA polymerase III complex. Is expressed in several structures, including head; immature eye; midbrain; midbrain hindbrain boundary; and segmental plate. Used to study Treacher Collins syndrome. Human ortholog(s) of this gene implicated in Treacher Collins syndrome 3 and hypomyelinating leukodystrophy 11. Orthologous to human POLR1C (RNA polymerase I and III subunit C).

NR:

description
PREDICTED: DNA-directed RNA polymerases I and III subunit RPAC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0046983 protein dimerization activity molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03027 RPC40, POLR1C; DNA-directed RNA polymerases I and III subunit RPAC1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254672.1 True 1384 mRNA 0.43 10 24298935 24302415

Neighbor

gene id symbol gene type direction distance location
LOC122357144 NA coding downstream 28486 24270314 ~ 24270449 (-)
angpt2a angpt2,angpt2a coding downstream 241031 24043636 ~ 24057904 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding downstream 303342 23633716 ~ 23995593 (-)
rnaset2 LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213 coding downstream 779281 23513815 ~ 23519654 (-)
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding downstream 793243 23465789 ~ 23505692 (-)
inaa inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding upstream 8612 24311027 ~ 24313946 (-)
cnnm2a cnnm2a,LOC107716327,LOC107588659,LOC107673921,LOC107585325 coding upstream 25450 24327865 ~ 24341452 (-)
wbp1la LOC107694985,LOC107716324,LOC107585326,LOC107673922,LOC107588740,LOC107708389 coding upstream 48432 24350847 ~ 24361296 (-)
fbxw4 fbxw4,LOC107707737,LOC107716323,LOC107673945,LOC107694796,LOC107588663,LOC107585327 coding upstream 65512 24367927 ~ 24393887 (-)
slc2a15a slc2a15a,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370,LOC107588743,LOC108442702 coding upstream 127605 24430020 ~ 24441333 (-)
G96329 NA non-coding downstream 16318 24274695 ~ 24282617 (-)
G96303 NA non-coding downstream 34018 24264668 ~ 24264917 (-)
G96301 NA non-coding downstream 48180 24250433 ~ 24250755 (-)
G96295 NA non-coding downstream 191117 24107433 ~ 24107818 (-)
G96286 NA non-coding downstream 228447 24070160 ~ 24070488 (-)
G96411 NA non-coding upstream 303715 24606130 ~ 24606376 (-)
G96415 NA non-coding upstream 328138 24630553 ~ 24675946 (-)
LOC122357044 NA non-coding upstream 350512 24652927 ~ 24664925 (-)
G96435 rims1,LOC107588670,LOC107718836 non-coding upstream 408329 24710744 ~ 24713458 (-)
G96436 NA non-coding upstream 411804 24714219 ~ 24716962 (-)
si:ch211-130h14.4 LOC107660236 other downstream 854872 23429646 ~ 23444063 (-)
G96053 NA other downstream 1303336 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 1475676 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 1850924 22371567 ~ 22448011 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 40334 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 96708 24399123 ~ 24404715 (-)

Expression


Co-expression Network