lingo2b (lingo2b,LOC107666555,LOC107556920,LOC107733787,LOC107747569)


Basic Information

Item Value
gene id lingo2b
gene name lingo2b,LOC107666555,LOC107556920,LOC107733787,LOC107747569
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5874187 ~ 5888825 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254675.1
CATCTAGAACAGCAGCCACAGGTGGCCATGCTGTTCTCTCCGTTCTCTTGTGCTCTGGGGCTCTCCCTCCTGCCACTCCTCCTGTTTCAGTGCCCCCACGCCTGCCCAGCCCGCTGCGAGTGCTCTGTGCCCACGCGTTCTGTGTCATGCCATCGCAGACGCTTAGCGCAGGTGCCTGAAGGCATCCCTATAGAGACAAGGGCACTGGACCTCAGTAAAAACCGGCTGCGCATTGTGACACCACAGAATTTCTCCTCACTGCTGTTGCTTGAGGAGCTGGACCTCAGCAACAACCTGTTGTCATCTGTGGAACCTGGCAGCTTCCGCACTCAGCCGCGCGGCCGCTCTCGACTGCGCAGCAATCAGCTGACTCTGCTGCCGCGTGGAGCGCTGGCCGGCCTCAGCGAGCTCACTCTGCTGGATGTCAGTCAAAACCGTCTTGTTATTCTGCTGGACTACGGCTTTGAGGAGCAGCGGAGGCTGCGGGTACTAGAGCTGAGTGATAATGAGCTAGTGTTTATCGCCCCACGGGCCTTCAGCGGCCTGGCGTCCCTGCGCTCTCTAACGCTGCAGCGATGCAACCTGAGCACAGTGCCCACACATGCTCTCGCACATCTGCATGGCCTAACCAGCCTGCGATTGCGGGACTTGGGAATCACGGAGCTTCAAGCACACGCATTTAAGGGTCTGCCACGACTGAAACACCTGGAAGTGGACCGCTGGCCTTTGTTAGAAGGGTTTCCGACCTCCGCTTTGCAGGGGCTGAACCTCAGCACACTCTCCATTACCCACACCAAAGCGTCCGTGCCAGTGGTGACACATCTACTGTATCTAACGCATCTCAACCTGTCTTACAGCCGTATACGTGTCCTGCCAGCAGGGTGGTTACGGGGAATGGACCGGCTGGAAGTTGTGCGTGTACGACAGtctaacctgctcagtgtggaACCTCAAGCCTTTCAAGGAGCCTCTTCGCTGCGCCTTCTTGACCTTTGTTACAACCGTCTCTCCACGCTTGAAAGAAGTGTTTTTCCTGCTTCTGAGGCCCTGCAGactcttctgattggccagaaCCCGTTAGTGTGTGACTGTCGTCTACGCTGGCTCCTGGAGAGGACTCCACCTTTGCTGTATGGTGATGTTCAACCTGAATGTAGTGCTCCTGCTCCCTTGGCTGGGAAGCCACTTAGGGACCTGATGGAACCTCAAATCTCTAAGCACGTTATCTGCACCAAGCCCAGGGTTGTCTCAATGGCAACTTACCCAGCACAGACAGAAGAAGGACAGAGAGCTTGGCTATACTGCAGTGCGGACGGGGCTCCACCACCTTCTGTGTCATGGCTGACACCGCATAGGCGGCACATTACCACAAAGAGCACGGGAAGAATGGTGGTCCACACAAATGGCTCGCTGGAGTTCCGCATGGCAGAACCTCAGGATAGTGGCATGTACGTGTGCGTGGCATCGAACCCAGCAGGCAATGCCACTCTGTCCATCACTGTAGCTGTGAAAAGCTCTGGAATCAGGGATAGAGCCCTTTACGCCAACCGCAGCTTTCTGTTTGACTCCGACTACAACAGTTCCCTGATTAATGGCACGGAGGAGTACACCATCAGGGTAGTGCTGGACTTCACCACCATCCTGGTCTCCACAGCAATGGGCTGCCTCAGCTTCCTGGGTGTCGTCTTGTTctgtttcttgttgttgtttgcatGGAGCCGTGGCAAAGGGAAGCACAGAGGTAGCGTGGACATTCAGTACGTCCCACGAAAGCGGAAAGGCGCAAACTCAGAACTTACAGAAACAAGTGGGCCCAGACGAGTCAACATGAAGATGATCTAAACTTTTTATATGGCCGAGGATTTCATGGGTTGCATGGTTGCGTATGCGTGTCTGTTGGACTTTGTGAGTCTTTGGGTATATGTGCTGCAAAAGATGCAAAGGATGTATTTAATCATGAGAGTTTACATGTGGTATCccaatgaaaaaagaaagaaaacagaaaaacgcCAAACCATATAATGCGCGTCTTCTGCGATGCTTTGTCTGTGGAAAGCATTATTTGGACGGTGCAGACGTGATTAAGTTGCTTGATTAAACtgttgtatatatttcatatttgtggGAAAGAATggtatatttctatatatatatatatataaatatatctatttacAGATACATTACAATTACCTTTCAAAACGCTGCAAAAACTCAAGTTGTCTTCCCCAATAAGCAAAGTATCTACTGGAAAAAGCCTCGGCAGTGCTGTGTTGTGAAGTGTTTGGTTTTGCTCAGAATTCCTGTTCTCCTGGGACGTCCTCTTCTTAGCAGAACCTCCGGGGGAACCAGGGAGTTTCCTGCCATTTTGTTGTAAAGATGTTAAAATGCAAGAAGCCGTTTGACATGGTGGGTTCCAGGGGCTGTATTTGTGACTCAGTGGAAGTCTGTGGAACTGTgtgaaaatgttcttttcttttcttatgtTCTGTCAAATGCTgctcaaatgtttttacatactAAATATCTGGTTATATtttccaaagaaaataaatataaatcgtACAGCTTGA

Function

symbol description
lingo2b Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in extracellular matrix and extracellular space. Orthologous to human LINGO2 (leucine rich repeat and Ig domain containing 2).

NR:

description
PREDICTED: leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254675.1 True 2573 mRNA 0.50 5 5874187 5888825

Neighbor

gene id symbol gene type direction distance location
c9orf72 zgc:100846,cunh9orf72,LOC107556919,LOC107747573,LOC107733782,LOC107695028,LOC107585223,LOC107666374 coding downstream 5847 5861797 ~ 5868340 (-)
kiaa1109 kiaa1109,si:ch211-233a24.2,LOC107747574,LOC107733727,LOC107695027 coding downstream 13025 5808835 ~ 5861162 (-)
letm1 letm1,LOC107666480,LOC107556916,LOC107747576 coding downstream 79957 5772243 ~ 5794230 (-)
foxi2 foxi2,LOC107556908,LOC107666395,LOC107695015,LOC107747601,LOC107585287 coding downstream 247511 5623826 ~ 5626676 (-)
cfd LOC107556907,LOC107695014,LOC107666376 coding downstream 277247 5595242 ~ 5596940 (-)
rrh rrh,LOC107666394,LOC107585226,LOC107733708,LOC107667069 coding upstream 58259 5947084 ~ 5950289 (-)
dapp1 dapp1,LOC107747563,LOC107667071,LOC107666557,LOC107733757,LOC107585227 coding upstream 63545 5952370 ~ 5959485 (-)
atp10d atp10d,LOC107747560,LOC107556926,LOC107666484,LOC107733756,LOC107667075,LOC107585234 coding upstream 72694 5961519 ~ 5982105 (-)
gabrb1 gabrb1,LOC107747557,LOC107666521,LOC107733746,LOC107585222,LOC107667065 coding upstream 98307 5987132 ~ 6009530 (-)
gabrg1 si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747 coding upstream 140383 6029208 ~ 6039909 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding downstream 141509 5731256 ~ 5732678 (-)
G91085 NA non-coding downstream 612064 5261065 ~ 5262123 (-)
G91066 NA non-coding downstream 743238 5130351 ~ 5130949 (-)
LOC122356716 NA non-coding downstream 744480 5128512 ~ 5129707 (-)
G91025 NA non-coding downstream 909228 4964602 ~ 4964959 (-)
LOC122356110 NA non-coding upstream 38168 5926993 ~ 5929491 (-)
G91364 NA non-coding upstream 210443 6099268 ~ 6101183 (-)
G91395 LOC107666411 non-coding upstream 294809 6183634 ~ 6183997 (-)
G91406 NA non-coding upstream 317269 6206094 ~ 6207963 (-)
G91420 NA non-coding upstream 402056 6290881 ~ 6292203 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1094455 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 1185019 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 1818774 4052743 ~ 4055413 (-)
wu:fj16a03 NA other downstream 1918232 3951763 ~ 3955955 (-)
timm23b timm23b,timm23a,LOC107565600,LOC107669571,LOC107739474,LOC108263229,LOC108426535 other downstream 2438607 3422753 ~ 3435580 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other upstream 31677 5920502 ~ 5926677 (-)
gng2 gng2,gbg2,LOC107569409 other upstream 172860 6061685 ~ 6073197 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 331350 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 469376 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 564706 6453531 ~ 6499573 (-)

Expression


Co-expression Network