LOC122356189 (inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959)


Basic Information

Item Value
gene id LOC122356189
gene name inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10294206 ~ 10297714 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254689.1
AatataatcaacatttaaacgttgtgtttgttcattaaaaacataaaatcattaaaatcataaaatcaaagGAATTCGTGTGAATTCTTATCTAAACCCAGTAAACAGTGCAAGGACAATGACTAATTATTTAgcctattcatttatttatttatttatttaaattaaattactctattaaaaataacttttggtCAATTGTCATTTGGTCATTCCGGGagaccaacatttttttttttttttttgctaaaatttGTAATGCAGTGATGGCcatctaaaacatttaatatagcacaaagagaaaaaaaatccaggaTCTAAACAAGTTCTTTGATCAAGCCTAAATCGATTTAACTGTTAAATTTCGGATCCATTCAAAACTGCGCAAACCTGGACAGTTCCATCGACAGACAGCAGTTTAAAGGACCCTAAAATCTGTCCTTTGTGTGCATGCGTCAAACAAACCCGCTGAAAACGTTACAGTTAAATTCACGTTTTAATTGTCTGAAAAGGTATAGTCTCATCTTAACTGTCACCACCAGAGGGAACATGACAGAATGGGACAGTCCGCCGGGTATATAATCACAAGCACACCCATTTTAGACTCCTTTAGTTGTGACGAAGATGAGCTACGGATCAGACAACTACATGTCCTCATCCTATAGAAAGATATTCGGGGAAACCCCTCGTTTCACCGGCTCCACCTCTAGGACGAGCAATGTCTCCTCGAGGAGCTCCATGTCTTCCAGCGGCTTCAGGTCCCACTCTCTCTCCCGCAGCAGCGCCTCTCCGGCGGGCTACTACAAGAGATCGGGCCGGTCATCGTCCTTCTCGCCGGTGCATTTCGACAGCGTGGATTTCTCCCAAACGGCCGTGTTGAACAACGAGTTTAAAATCGTGCGCACCAACGAAAAGGAGCAACTGCAGGGTCTCAACGACCGTTTCGCGATGTTTATCGAGAAGGTGCGCAATCTGGAGCAGCACAATAAAGTGCTGGAGACTGAACTGGTGAGTCTGCGCCAGAGGCAGAACGAGCCGTCCAGGCTGGCTGACCTCTACCAGCAGGAGATCCGGGACCTGCGAGCCCAGGTGGACGAGCTGAACAATGAAAAATCACACATTCTCATCGAGCGAGACAATATCGAGGAGGACTTGCAGAAACTTCGGGGCAAGTTTGAGGATGAGATCCGAGTGCGCGAGGAGGCAGAGCAGACGCTCAGGTCCTACAAGAAAGACGTGGACGATGCCACCATGGTGCGCGTGGACCTGGAGAGAAAGGTCGAGTCCCTCTTAGACGAGATCAACTTTCTGAGGAAAGTGCATGACGAGGAGGTGGCGGAGTTGACCGGCATGATCCAGGCGGCGCAGATATCCGTGGAAGTGGAGTTGTCCAAACCGGATCTGACCTCGGCCCTCAAAGAGATCCGTGGGCAGTACGAAACCCTCGCGTCCAAGAACCTGCAGTCGGCCGAGGAATGGTACAAATCAAAGTTCGCCAGCCTCAACGAGCAGGCCACCAGGACCAACGAGGCCATGAGAGCCACAAGAGAGGAGATCAGCGACTACAGGAGACAACTGCAGTCCAAGACTATTGAGATCGAGACCTTGCGAGGCACAAACGAGTCACTCGAGCGACAGATCCGCGAGATGGAAGATACACACAATGCCGAGGTCGCAGGTTATCAGGAAACAATCGGGCAGCTGGACATTGATCTAAGAAATACCAAGAGTGAAATGGCCCGTCACCTCCGGGAGTATCAGGATCTTCTGAACGTCAAGATGGCATTAGACATTGAAATTGCAGCATACAGAAAGCTACTAGAAGGCGAAGAAACCCACTTCAGTTCTGGGGTGACATTCTCCAGTGCCCCCAGCATCACTTACGGGTATCAGAGCCGCTCCGCTTTCACCTCAACCCGCAATcccaaaaaagagaaagaagaagagggACACGGCAAATCCAAGGCAGGAGACAAGCGGGAGGAAAACACGGCAGAAACCGCTGTGATTAAGAAAGCAGAGAAGAGCGATAATGTTGATGTTAACTCAAATTAGAAAGTTACGGTTATTAAACCAACGCTTCTCTAGATAAGCGGTCTTTGGGGCGTTTGACAGTAATCACTATTAGATCAAATCTGCCAGTTGTTGTTTATAGTCATCGGTGACGTGTTTAAGATATTGTAATTGTGATATCTTGTTTCAAATACTATAGCTGCAATATGCTGGCTTAATATTTCAGAACTTAGGCCTCAAATATTTCCTGTGTTTCTAAATTGTATTTCAGTCCTGTTCATGGAGTATAAATATGAACTTATTATATTAGCCAGCATTAGCACTGATTCAGTGATTATggatatattcatatttaggAAAGGAAAGAACTCTGGCATATTACGAATAAGGGACCAAACTGCTGAATTAACTGTAACACATGTATGCCTTAACTATAATAAAGTCAATAACTGAA

Function

symbol description
inaa Predicted to act upstream of or within nervous system development. Located in intermediate filament. Is expressed in nervous system and optic cup. Orthologous to human INA (internexin neuronal intermediate filament protein alpha).

NR:

description
PREDICTED: alpha-internexin-like

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254689.1 True 2467 mRNA 0.45 5 10294206 10297714

Neighbor

gene id symbol gene type direction distance location
fancl fancl,LOC107585345,LOC107718841 coding upstream 227034 10051087 ~ 10067172 (+)
bcl11aa bcl11aa,bcl11a,LOC107666449,LOC107601892,LOC107655449,LOC107559339,LOC107743494 coding upstream 626368 9615027 ~ 9667838 (+)
neurog3 LOC107666354,LOC107726936,LOC107601803,LOC107655417 coding upstream 725679 9567617 ~ 9568527 (+)
pcbd1 pcbd1,LOC107559335,LOC107743500,LOC107601888,LOC107655445 coding upstream 741711 9549733 ~ 9552495 (+)
LOC122356643 sec23ip,LOC107666414,LOC107655440,LOC107743502 coding upstream 802800 9482211 ~ 9491406 (+)
ldb1a ldb1a,ldb1,LOC107707596,LOC107585322,LOC107673939,LOC108442788 coding downstream 15700 10313414 ~ 10333604 (+)
LOC122357143 NA coding downstream 31430 10329144 ~ 10329279 (+)
prom2 LOC107707565,LOC107588656,LOC107688306,LOC107585354 coding downstream 36961 10334675 ~ 10343979 (+)
nsmce4a LOC107707575,LOC107588653,LOC107688307,LOC107716332,LOC107585317 coding downstream 52074 10349788 ~ 10354314 (+)
LOC122357091 LOC107708061,LOC107688300,LOC107716282 coding downstream 58849 10356563 ~ 10385602 (+)
G92552 NA non-coding upstream 18028 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 128550 10164559 ~ 10165656 (+)
G92513 NA non-coding upstream 223423 10068488 ~ 10070783 (+)
LOC122356803 NA non-coding upstream 244764 10044781 ~ 10049442 (+)
G92434 NA non-coding upstream 563204 9730725 ~ 9731002 (+)
G92563 NA non-coding downstream 11523 10309237 ~ 10309776 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding downstream 344842 10642556 ~ 10645237 (+)
G92675 NA non-coding downstream 359794 10657508 ~ 10702103 (+)
LOC122357062 NA non-coding downstream 455519 10753233 ~ 10763691 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 523228 10820942 ~ 10947919 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 44481 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 859601 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1130092 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1205085 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 1266297 9025943 ~ 9027909 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 118526 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 667141 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 915812 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 957880 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 1091671 11389385 ~ 11413515 (+)

Expression


Co-expression Network