loxl4 (loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088)


Basic Information

Item Value
gene id loxl4
gene name loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15654465 ~ 15681394 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254690.1
ggagagagagggagagggaggagAGGGACAGACTGTATGTTCAGCTCTCTCCTTCATTCATTTTCCTTCAGTCCGTGACTGACGTGACTTACGTGTGGCTGCCAGAAGCCTCACCTCTGTGCAATCATGATTCGGGCCATCTGTCCCATTCGTGTTCTCCTCTTTGCGCTCCTCTTCGTGTGCGCGGACGCCCGTCCCGATTCGCCAGGCCGCTTAAGGCGAGCTCCTGCTGCCAAAGTGCGACTGGCAGGTATCGGCAACAGAGAAAACGAGGGAAGAGTTGAAGTCCTGCACAACGGGACGTGGGGCACCGTGTGCGACGATGAAGTCGACATTAAACTCGCTAATGTGGTTTGCAGGGAGCTTGGCTTCCAAAGTGGCATAACATGGGCGCACAGTGCCAAGTACGGAGAGGGAGAAGGCCCCATTTGGATGGATAATGTGAGGTGTGAAGGAACGGAGAAAACTCTGAAAGACTGCAAGTCGAACGGATGGGGCGTTCATGACTGCAAACACTCTGAGGATCTCGGGGTGGTCTGCAGTCCCGAGAGAAGGCTGGACCAAGTTCACCCTGGAGTCACCAGAAGAGGGCACACCATTTCCCTCAGGCCCACAGTCACCTCGAACCGTTGGCAGGACATTTACTCCAATTCAAGGACACCTGCACATCTCAGACAAGGCAACGGACATTCCCAGGATCTTACCAGATGGGATCAACCCTCCAGACAGCAGTTTCATAATCCGTCTGCCAGTAGGGTGAAGATCGAGGAAGTCCGCCTCAAGCCGATCTTGATGGTTACAAAGAGGCGTGCTCTAGTTACGGAAGGTGTGGTGGAAGTAAAGCATGCTGGGAGATGGAGACAGGTGTGTGATAAAGGCTGGAGTCTGAACAGCAGCAGAGTTGTGTGTGGGATGCTTGGCTTTCCTGATGCGGAGCTGCCCAACACGAACACCTACAAAAAAATATGGGATAAAAAAGTCAAGGATTCCACAACCAGATTGAGTCAGATGACCAAGAAGAAGGGATTCTGGGTTGAGAAAGTACATTGTCTGGGCACAGAGCCCAGTCTGGCGGAGTGTCATGCCCAGCTGTCAATCCCTCGAAGCCCTGGCCCCTGTAAGAACGGTCGCTATGCTGTGGCCCGCTGTGTCCCAGGACCTCAGTTTGCCCGTATGTCCTCTGGCAGACCCCAGGCACCTCACCCCGCAGAGCTGTCAGTGCGTCTGAAGGCAGGACCGCGTCTGGGAGAAGGAAGAGTCGAGGTTCTCCGTGAGGGAAAGTGGGGAACCGTGGTTGACCACCGGTGGGACCGGATGTCAGCCAGTGTGGTGTGCAGAGAGCTGGGCTTCGGCACTGCCAAAGAAGCTCTTACTGGGGCGTACATGGGTCAAGggACGGGGCCGATCCACATGAACTCAGTGCAGTGCACTGGCACAGAGCGCTCCATTTTGGATTGTTACTTCCAGGAAGTCCCTCCCTGGACATTCAAACACAGCCAGGACGCTTCTGTCAGATGTTATGTTCCTAAGACGGGTTTCGAGACCACGgtgcgGTTGGCGGGCGGCCGAGACCCGGCTGAGGGTCGTGTGGAGGTGCTCATGGAGGTCGGCGGCAGAAAGCGCTGGGGGACGGTTTGCAGTGAGAACTGGGGAATAAACGAAGCCATGGTGGTGTGCAGGCAGCTGGGCTTTGGTTTCGCCGCACGTGCCCATCAGGACACATATTATTGGCAAGGGGACCCTTCAGCAGAAGAAGTGCTGTTGAGTGGGACTCACTGTGTGGGAACAGAAATGTCCGTCCAGCAGTGCCGTCGTAACAATTATGTCCACTGCCCTCGAGGAGGCGGAGCTAAAGCAGCAGGTGTCACCTGTTCTGAAACGGCGCCGGACCTGGTTTTGGATTCGCAGCTCGTGCAGGAGAGCGCTTACCTGGAAGACAGGCCTCTGCACCTGCTCACCTGTGCACATGAGGAGAactgtctctcttcctctgccAGCCGTATGCAGTGGCCGTACGGGCACCGCCGCCTTCTGCGTTTCTCGTCCCGTATCATGAACTTGGGCAGAGCCGACTTCCGTCCGAGAGCCTCAAGAGAGTCCTGGACCTGGCACCAGTGCCACAGGCATTATCACAGCATCGAAGTGTTCACGCATTATGACCTCCTCACACTCAACGGAAGCCGAGTGGCCGAAGGACATAAAGCCAGTTTCTGTCTGGAAGACACCTACTGCCCTGAAGgaCTTCACAAGCGCTTTTCGTGTTACAATTACGGAGACCAAGGCATTTCGGTGGGTTGTTGGGACACTTACCGCCACGATATCGACTGCCAGTGGATAGACATCACTGATGTCAGACCTGGAGACTATATCATGCAGGTTGAAGTAAATCCATCGCTGGACATGGCTGAATCAGACTTTATGAACAACGTCATGCGTTGTCGATGTAAATATGATGGACACCGAGTGTTTATGTATGGCTGTCACGCAGGTGATGCCTACAGTGCAGAAACTGAGGATTTATTCGAACATCAGCGTCAGATCAGCAACAACTTCGTTTGAGCCCGGTAAAGAGAGGTGAGAGGAGAGGGTGTTCATTAATGGCTCCCGGAAATACGGCTAATTGGGCGATAAACTGGGTGAAAGATGAGATCTCAGTTGTCTACCAATAGCACTAATGAGTGGATGTTACATCGCTAAACGATTTTCTCTGTGGAACTGAATTAACCCTTCCAGATGATCAAGGAAAGacttagttcacccaaaattagattctgtcatgatttgtctttgtattttgtatttgacTTTTGTTAGTAAGTACAGTAACATACTGGTTTTCCTTTTGCAATGAATACAGATTGGAGCTTATTTTTAGGAACTATATTTAAGACggtgtctgtgtttctctcttgAGATCTACTACGGATGCCAAATTTTTTTGTAGATAACTTAAAGTGCCTTTactatgggttatgaaaggttgatattttggttttgggattCCCCATTAACAAACTGAcgtgcatgcaaggtcaaaaaaaaaacactttcattttcttataatatgcatttaattttaacttatttgttcaacgactctcAACCGATTCGATCGaaactattatttttagcttttaacgctccaaaagcaCACCTAAtgacaaagaatgaatttgcattttcattcagaccaacgcaaaaAATCAAGCGGGCGGTCAATATGcttatgtttcattttgacgtcaACGTGAAACGGCTTAGgactttttttaacttgttttgaCTTTGTACATGGtgcgctttcagatttaaaacaggatgttttgttacacactgcatgaaaggtcattttcagtGAGTCTGCATGGCACGCATGGTTTTGTATCAGAAGATTGGGTATTGATAGTTCCAGTCCTTTTACTATCATTTTATTGAATAGAGTGGATTATATCATATTCTGTCGTATGAGTCATATGAATCATACGAGTGTCTTCTAAGGCCAATTCACACTGTACTGACAGATTGCGACCAATGGCAACAGATTTGCTGGTCTGGTTTTGTCTGATCAGTGTGCCATCGTCTGCTGGCATTGGTGAGCACTTGTTTTTGCCAATTGAATCGACATTTTTCGGCTCTGTGAATATCTGAGAAGTGACTGGTCAGCTGTCGGCGCTGGTCTGTGTCTGACGGTGTGCTGTGAATTGGCTTTTAGTGGTCACTGTTTTCACAGTAGACTCTCTTATCGGACTAATACCCAGAGCTTTGGAATGAGTTGCGTGTTTAGAAAtcctttgctttcctttttaaacttttactgGCTCGGTTAGTTTGACATCCAGTGAAACCCTGTGCAGCAGAGGCCCTTTTCCCGAGCCACAGGAGTTGGTAAATAAAGCcagaatctgtattttttttaggtgttAACTGTTTCTTTAGGATTCCATAAATTATTGTCCTTTGAATGATTAGGACATTGTTTTCTAAGACTAGTTAGCTCCAGTTGTTGTTGATCATctggataaaaataaaacatcatgtAAAATCTGTCGTTTTTGGGACCATGAGACTAGCGTtagaaaataatgaattttttattgttttcacgtacccatatatttatttcttgaaGTTATAGATTAATTATAGAATAATTGTGTAATtataagataaatatatttgtacaatgtttaatattttaattttaactacattttaccaaaaaaaagagtCCTTTTCTGATCTACTTTTCCTGACATCAAAATGCAGTTTGTTCACTTCTTCTGTTCATTTATGAgttttatatcttattttaattcTTCTGTTTGAGCTATGCACTTTATAAATGGATGTCAGTATTCTGGAAGAAACAGGCCCTTCACTTCCATCTTTCAACACACActtctgtttgtttgcttattaaCATGTCGAAGTATTTATGCcttctttccatttttttttataatattctttttttaaataattctccGGCGACTTAATCCTAAAGGGTAACAATGGCTGTTGTATATGCTgaagattaatttatttaattacattgttAAGCAAAATTTCCAGATGAAAGTTTTATTCGTTTATAAACGCTTGCTAAATGTCTGACTGCTTTAATGTAGCCGATTTAACATGTTCGAGGTTTGGAATTTGTTAAATATGTACTTGacgcttttttttaacatccaTGAGTATAAAGAGTACGTTGTTACGGTGTTGCAAGCAGTCCTGAAAAGCATTCACAGTGATGCTGGGAACGAACATTTATGGCCCAGagctttaaatgtatttttaaagtagtGAAACCTTTGTGTACAAATGGTAAAAGCAACAACACTTTTTTGAGCTGTACTGTAtcagtttttacttttgtaatttttgcacAGTACAAGACATTGTATAACAACAGTTATTGTGCATGTGATGAACTGATGAACtgactttatttttactgtgtatCTTAAATCCTTGTGTTATTTATCCTAAGGACATCAACTTAtgtaatttccatttttataatgtagtgtttttttaaacatttgtaaaatcataaatatgacTGATTTTATTCTGTCCCTGTATTTTGTACTTTACTTTCACCATGTTACTCTTGATTTATTTCAcctatgcttttatttataattcacaTGTTACTGTGTGCTCCTAGTTCTTAGCTCTTAGTGGTGCATTAATTGATTTCAGTCCATTattatcatatacatatatgtgtgtgtgtttgtgtgtgtgtctgtgtgtgtgtgtggataaaaTCAGGTGCTAATTGTTCGCTTTTCTGTGAGTTTAGAGGTTAAGCTTTTAATGCAATTAGCAGTACTTTCAGGGATGAAACGTGTGTCTTTTCCAGTTTGTCCAGAATCATTTCAGCCAGGATAGATATAAATTATTTCGAACAATATTCCAGAAACTGCAACGTGACGTAAACTCTTCTTACTGTTTTGTGATTAATGTTACAGTAGTAAGACTATGCAAACAACTGATCtcaaatgtgaataaatatcGCTCATCAGGTCTCATTTAGCTGCCCGTACTCTGTTTTTATGCTCATTGTATACCATAACCCACTGCAAGGGGACTCCATTaacaataaatgtg

Function

symbol description
loxl4 Predicted to enable protein-lysine 6-oxidase activity. Predicted to be involved in collagen fibril organization and peptidyl-lysine oxidation. Predicted to be located in extracellular region and membrane. Predicted to be active in extracellular space. Orthologous to human LOXL4 (lysyl oxidase like 4).

NR:

description
PREDICTED: lysyl oxidase homolog 4

GO: NA

KEGG:

id description
K00280 LOXL2_3_4; lysyl oxidase-like protein 2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254690.1 True 5619 mRNA 0.44 15 15654465 15681394

Neighbor

gene id symbol gene type direction distance location
crtac1b crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504 coding downstream 21895 15609866 ~ 15632570 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040,LOC107564685 coding downstream 92908 15546586 ~ 15561557 (-)
zgc:171482 zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817 coding downstream 146753 15443065 ~ 15507712 (-)
slc35f3b slc35f3,LOC107747268,LOC107665565,LOC107664233,LOC107736862 coding downstream 284115 15319657 ~ 15370350 (-)
eys si:ch211-69e5.1,LOC107553185,LOC107736852,LOC107664247,LOC107747288,LOC107683858 coding downstream 867361 14630594 ~ 14787104 (-)
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding upstream 20033 15701427 ~ 15710148 (-)
nkx3.3 nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953 coding upstream 62523 15743917 ~ 15748460 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding upstream 190681 15872075 ~ 15876837 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding upstream 208579 15889973 ~ 15893677 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding upstream 598271 16279665 ~ 16289717 (-)
G94145 NA non-coding downstream 13832 15640275 ~ 15640633 (-)
G94132 NA non-coding downstream 48752 15604687 ~ 15605713 (-)
G94063 NA non-coding downstream 370410 15279407 ~ 15284055 (-)
G94016 NA non-coding downstream 658765 14980996 ~ 14995700 (-)
G94003 NA non-coding downstream 781451 14872432 ~ 14873014 (-)
G94199 NA non-coding upstream 81157 15762551 ~ 15762843 (-)
G94200 NA non-coding upstream 82030 15763424 ~ 15763745 (-)
G94232 NA non-coding upstream 225876 15907270 ~ 15907491 (-)
G94247 NA non-coding upstream 285620 15967014 ~ 15967343 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding upstream 648748 16330142 ~ 16332347 (-)
G94147 NA other downstream 11962 15642031 ~ 15642503 (-)
G94128 NA other downstream 70548 15564617 ~ 15583917 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other downstream 401108 15227332 ~ 15253357 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other downstream 555232 15024832 ~ 15099233 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 1490051 14160323 ~ 14164414 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 4876 15686270 ~ 15720816 (-)
nkx2.3 nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236 other upstream 71242 15752636 ~ 15755128 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other upstream 93383 15774777 ~ 15793540 (-)
G94216 NA other upstream 196133 15877527 ~ 15885222 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other upstream 328293 16009687 ~ 16169204 (-)

Expression


Co-expression Network