inaa (inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959)


Basic Information

Item Value
gene id inaa
gene name inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 24311027 ~ 24313946 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254701.1
AGAATGGGACAGTCCGCCGGGTATATAATCACAAGCACACCCATTTTAGACTCCTTTAGTTGTGACGAAGATGAGCTACGGATCAGACAACTACATGTCCTCATCCTATAGAAAGATATTCGGGAAACCCCTCGTTTCACCGGCTCCACCTCTAGGACGAGCAATGTCTCCTCGAGGAGCTCCATGTCTTCCAGCGGCTTCAGGTCCCACTCTCTCCGCAGCAGCGCCTCCGGCGGGCTACTACAAGAGATCGGGCCGGTCATCGTCCTTCTCGCCGGTGCATTTCGACAGCGTGGATTTCTCCCAAACGGCCGTGTTGAACAACGAGTTTAAAATCGTGCGCACCAACGAAAAGGAGCAACTGCAGGGTCTCAACGACCGTTTCGCGATGTTTATCGAGAAGGTGCGCAATCTGGAGCAGCACAATAAAGTGCTGGAGACTGAACTGGTGAGTCTGCGCCAGAGGCAGAACGAGCCGTCCAGGCTGGCTGACCTCTACCAGCAGGAGATCCGGGACCTGCGAGCCCAGGTGGACGAGCTGAACAATGAAAAATCACACATTCTCATCGAGCGAGACAATATCGAGGAGGACTTGCAGAAACTTCGGGGCAAGTTTGAGGATGAGATCCGAGTGCGCGAGGAGGCAGAGCAGACGCTCAGGTCCTACAAGAAAGACGTGGACGATGCCACCATGGTGCGCGTGGACCTGGAGAGAAAGGTCGAGTCCCTCTTAGACGAGATCAACTTTCTGAGGAAAGTGCATGACGAGGAGGTGGCGGAGTTGACCGGCATGATCCAGGCGGCGCAGATATCCGTGGAAGTGGAGTTGTCCAAACCGGATCTGACCTCGGCCCTCAAAGAGATCCGTGGGCAGTACGAAACCCTCGCGTCCAAGAACCTGCAGTCGGCCGAGGAATGGTACAAATCAAAGTTCGCCAGCCTCAACGAGCAGGCCACCAGGACCAACGAGGCCATGAGAGCCACAAGAGAGGAGATCAGCGACTACAGGAGACAACTGCAGTCCAAGACTATTGAGATCGAGACCTTGCGAGGCACAAACGAGTCACTCGAGCGACAGATCCGCGAGATGGAAGATACACACAATGCCGAGGTCGCAGGTTATCAGGAAACAATCGGGCAGCTGGACATTGATCTAAGAAATACCAAGAGTGAAATGGCCCGTCACCTCCGGGAGTATCAGGATCTTCTGAACGTCAAGATGGCATTAGACATTGAAATTGCAGCATACAGAAAGCTACTAGAAGGCGAAGAAACCCACTTCAGTTCTGGGGTGACATTCTCCAGTGCCCCCAGCATCACTTACGGGTATCAGAGCCGCTCCGCTTTCACCTCAACCCGcaatcccaaaaaaaaagagaaagaagaagagggACACGGCAAATCCAAGGCAGGAGACAAGCGGGAGGAAAACACGGCAGAAACCGCTGTGATTAAGAAAGCAGAGAAGAGCGATAATGTTGATGTTAACTCAAATTAGAAAGTTACGGTTATTAAACCAACGCTTCTCTAGATAAGCGGTCTTTGGGGCGTTTGACAGTAATCACTATTAGATCAAATCTGCCAGTTGTTGTTTATAGTCATCGGTGACGTGTTTAAGATATTGTAATTGTGATATCTTGTTTCAAATACTATAGCTGCAATATGCTGGCTTAATATTTCAGAACTTAGGCCTCAAATATTTCCTGTGTTTCTAAATTGTATTTCAGTCCTGTTCATGGAGTATAAATATGAACTTATTATATTAGCCAGCATTAGCACTGATTCAGTGATTATggatatattcatatttaggAAAGGAAAGAACTCTGGCATATTACGAATAAGGGACCAAACTGCTGAATTAACTGTAACACATGTATGCCTTAACTATAATAAAGTCAATAACTGAA

Function

symbol description
inaa Predicted to act upstream of or within nervous system development. Located in intermediate filament. Is expressed in nervous system and optic cup. Orthologous to human INA (internexin neuronal intermediate filament protein alpha).

NR:

description
alpha-internexin

GO:

id name namespace
GO:0005882 intermediate filament cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG:

id description
K07608 NF66, INA; internexin neuronal intermediate filament protein, alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254701.1 True 1910 mRNA 0.49 4 24311027 24313946

Neighbor

gene id symbol gene type direction distance location
LOC122356174 polr1c coding downstream 8612 24298935 ~ 24302415 (-)
LOC122357144 NA coding downstream 40578 24270314 ~ 24270449 (-)
angpt2a angpt2,angpt2a coding downstream 253123 24043636 ~ 24057904 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding downstream 315434 23633716 ~ 23995593 (-)
rnaset2 LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213 coding downstream 791373 23513815 ~ 23519654 (-)
cnnm2a cnnm2a,LOC107716327,LOC107588659,LOC107673921,LOC107585325 coding upstream 13919 24327865 ~ 24341452 (-)
wbp1la LOC107694985,LOC107716324,LOC107585326,LOC107673922,LOC107588740,LOC107708389 coding upstream 36901 24350847 ~ 24361296 (-)
fbxw4 fbxw4,LOC107707737,LOC107716323,LOC107673945,LOC107694796,LOC107588663,LOC107585327 coding upstream 53981 24367927 ~ 24393887 (-)
slc2a15a slc2a15a,LOC107716293,LOC107673883,LOC107708408,LOC107696166,LOC107585370,LOC107588743,LOC108442702 coding upstream 116074 24430020 ~ 24441333 (-)
b3gat2 b3gat2,LOC107718837,LOC107694338,LOC107673925,LOC107588666,LOC107585329,LOC107716319 coding upstream 289742 24603688 ~ 24620433 (-)
G96329 NA non-coding downstream 28410 24274695 ~ 24282617 (-)
G96303 NA non-coding downstream 46110 24264668 ~ 24264917 (-)
G96301 NA non-coding downstream 60272 24250433 ~ 24250755 (-)
G96295 NA non-coding downstream 203209 24107433 ~ 24107818 (-)
G96286 NA non-coding downstream 240539 24070160 ~ 24070488 (-)
G96411 NA non-coding upstream 292184 24606130 ~ 24606376 (-)
G96415 NA non-coding upstream 316607 24630553 ~ 24675946 (-)
LOC122357044 NA non-coding upstream 338981 24652927 ~ 24664925 (-)
G96435 rims1,LOC107588670,LOC107718836 non-coding upstream 396798 24710744 ~ 24713458 (-)
G96436 NA non-coding upstream 400273 24714219 ~ 24716962 (-)
si:ch211-130h14.4 LOC107660236 other downstream 866964 23429646 ~ 23444063 (-)
G96053 NA other downstream 1315428 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 1487768 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 1863016 22371567 ~ 22448011 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 28803 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 85177 24399123 ~ 24404715 (-)

Expression


Co-expression Network