valopa (valopa,LOC107689369,LOC107688178,LOC107754013,LOC107745034)


Basic Information

Item Value
gene id valopa
gene name valopa,LOC107689369,LOC107688178,LOC107754013,LOC107745034
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 21847430 ~ 21866898 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254705.1
GCATCTTCTGAACGCGAGCGTCTGCGTAAAAACCTTCGGAGCGCGCTGAAGCgctgacgatgatgatgatgatgaaggcgCAGTTACGTGGCTGACCTGACCCGTGATGGCAGCCTATATAAACCCCGTCCAGCCAGAGAAAGTCTGCAAGGTCTGCCGGACCCACCGAGGAGCGGCTCCGGATGTAGGACGCGCGCGGACTCGCTCCAGATGTAGACTCGCTTCGGTTCACTCGACTCGTTCGGACCGGAGCCATGGAGTCGTTCGAGGCGGCGGTGAACGGCGCGTCTCCCGGCGAGGACCCGTTCTCCGGACCGCTGGCGTCCATCGCGCCCTGGAACTATAAAGTGCTGGCTGCTCTGATGTTCATCGTGACCTCGGTGTCTCTGTGCGAGAACTTCACCGTGATGCTGGTCACCTTCAGGTTCAAGCAGCTCCGGCAGCCGCTCAACTATATCATCGTGAACCTGTCTCTGGCGGACTTCCTCGTGTCTCTGAGCGGAGGAACCATCAGCTTCCTGACCAACTATCACGGCTACTTCTTCCTGGGGAGGTGGGCTTGTGTTCTCGAGGGGTTCGCGGTCACCTTTTTCGGGATCGTGGCTCTCTGGTCTCTGGCTGTTCTGGCGTTCGAGCGCTTCTTCGTCATCTGCCGGCCGCTCGGGAACATCCGCCTGAGAGGAAAACACGCGGCTCTGGGTCTGCTGTTCGTCTGGACCTTCTCCTTCGTCTGGACCATCCCTCCGGTGCTGGGCTGGAGCAGCTACACCGTCAGTAAGATCGGCACCACCTGTGAGCCCAACTGGTATTCAGGAGACCTCCACGATCACACCTTCATCATCACGTTCTTCGTCACCTGCTTCATCCTTCCTCTGGGCGTGATCATCGTGTGTTACAGCAAGCTGCTCCGGAAGCTCAGGAAGGTGTCTAACACGCACGGCAGGCTGGGTAACGCCCGGAAGCCCGAGCGTCAGGTGACTCGtatggtggtggtgatgatcGTGGCCTTCATGGTGGCCTGGACTCCGTACGCTGCCTTCTCTATCGTGGTCACGGCCCTTCCCAGCATCCACCTGGACCCGCGGCTCGCGGCCGTTCCTGCGTTCTTCTCCAAGACCGCCGCCGTTTACAACCCCATCATCTACGTCTTCATGAACAAACAGTTCAGAAAGTGTGTGGTTCAGCTCCTGAGCTGCAGCGACGTGACGGTCATCGAGGGCAACGTCAACCAGACCACCGAGAGAGCAGGCATGACCAATGAGAGCAACACCGGCGAGATGTCGGCCATCGCCGCACGCATCCCCGCCGCCGGAGCCGTCCCGCTGAAGACCGAAGAGCAGTCCAATGAGCGCAGCTCCTTCGCCCAGATCCCCATTCCTGAGAACAAAGTATGTCCGATGTGAAGACCTCTGCTGAATGCGTACTTACTTTTGAATGCTGGCATCCAAACTTTAGGCTAAAAGACGCCGATCCAGCATTAAATTACAGCTTGAAATGTGCAGTGTTGAGGAAGAAACTATCTACAAACTACTTGTTATTTTGtttggcatttatttgaaagcttTATTTAGCCGTGGTTTcacaaatacaattaattttatattcatacagTTACAGTAATGGTAACACTACTTGAGGTCTTTGTGTATAATGCATTACCACaggaaaaaatactaaaatgaaatacataaataaaagtgcttcTATAGTTGATTGGGTAATATGACAACTATAGCAAAAGAAACTAATTTCAATTAAGTTTTCTACAATACTTTAATACTACAATACACTACGGTTTACTACATTATTTATCAGTTCACTATAgctaataatgcattaaatattttcataaataatgcattatattttcagatttgcTTGTTGTAGCTGAAATGTGTCGTTCGtcttgtgttttaatgcattatattttttaatgagtaGATTAGTATTATAACTGTGATTACAATTATTCACGATGTCACCATTTAAAAAGCGTAATTAATGcgtgattttattattaaatagataaTTGGCACTTTTCCATCTCGCAGTTCGGAGTTTATAGCTCAcaatttataatttgtttttgaattcaGAATTGACGTTCGGCACTCTTTTTCCACAtggaataaaagataaaaaaaaagcgaaTTGCGacatacttttataatgcattatataaatgctTCAGATTGCGTGTTACCGCTGACAGCAATAGCATGGTACAGTGCTGCTAATATTACAGTACATCAATATACATGATGGTGGTAAACCAAGCTGTATACGTGGAACCCCGAAGAACCGATTGGAAGAACGACATGTTTAGCTAGGAAACGAAAAGCTCCTCCTCAACACTGCATTAATGACTCCTGACTGTTGAATGTTGATCATCGGTTACTCACACTGAATTTTCCGAGGCTTCTTTACTGCAACATTTGCacaattattaaacagaaaTCAAGCAGAAAAACAGACTGAATGCGATGCGTTCGGGCACCTGACACCAGAACACGTGTGCATTTCCCAGATGAAGGGAATAAGTGGACGAGCAAACACTACAAGTGCCCTTCAAACTCTGCCGAACGTCATCCAGCACACCCAGAGTCTCCTGAACTGTTATCTTTAAGGAATATTTCCCTGTATCTGATGCATTCTGTGTTGACTGTATGatcagagaaacacacacgaGCTCCGATGATGCAGCTTTCTCGAcaactgaatgtgtttttattttattcctttgttAAAGGAATgtcaaaattcagatttttttttttttcaggtctgTTTGCGCTTAAACAAAATGTACACTTATCATTAAATTGGTCAAGAGTAACAGCAAA

Function

symbol description
valopa Predicted to enable G protein-coupled photoreceptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; cellular response to light stimulus; and phototransduction. Predicted to act upstream of or within protein-chromophore linkage; signal transduction; and visual perception. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in photoreceptor outer segment. Predicted to be integral component of plasma membrane. Is expressed in several structures, including digestive system; heart; integument; nervous system; and testis.

NR:

description
PREDICTED: vertebrate ancient opsin

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0009881 photoreceptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254705.1 True 2843 mRNA 0.47 5 21847430 21866898

Neighbor

gene id symbol gene type direction distance location
trnag-gcc_71 NA coding downstream 273109 21574251 ~ 21574321 (-)
trnag-gcc_70 NA coding downstream 433559 21413800 ~ 21413871 (-)
LOC122356942 LOC107689348,LOC107663569,LOC107750139,LOC108426858,LOC562831,LOC108262825,LOC107567011,LOC105926138 coding downstream 524427 21269350 ~ 21323003 (-)
LOC122356506 LOC107689349,LOC107663567,LOC107750141,LOC107720869,LOC107570923 coding downstream 592792 21209818 ~ 21254638 (-)
LOC122356507 LOC107708201,LOC107658777,LOC107554523 coding downstream 805276 21027765 ~ 21042154 (-)
LOC122356328 inpp5a,LOC107744939 coding upstream 41460 21908358 ~ 22024610 (-)
pwwp2b pwwp2b,LOC107670800,LOC107754010,LOC107744923,LOC107653191 coding upstream 174557 22041455 ~ 22051686 (-)
srfb LOC107689574,LOC107570739 coding upstream 290767 22157665 ~ 22183174 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding upstream 318142 22185040 ~ 22227004 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding upstream 387281 22254179 ~ 22283646 (-)
trnag-gcc_72 NA non-coding downstream 193749 21653612 ~ 21653681 (-)
G95715 NA non-coding downstream 352277 21487514 ~ 21495153 (-)
G95643 NA non-coding downstream 843779 21002627 ~ 21003651 (-)
G95642 NA non-coding downstream 845586 21001337 ~ 21001844 (-)
G95641 NA non-coding downstream 848165 20999040 ~ 20999265 (-)
G95899 NA non-coding upstream 7615 21874513 ~ 21874929 (-)
G95903 NA non-coding upstream 172884 22039782 ~ 22040106 (-)
G95902 NA non-coding upstream 247798 22114696 ~ 22120442 (-)
G95922 NA non-coding upstream 269038 22135936 ~ 22136391 (-)
G95934 NA non-coding upstream 307428 22174326 ~ 22244477 (-)
G95646 adgra1,LOC107750141,LOC107567015,LOC107663568,LOC106903219,LOC107720869 other downstream 667213 21007472 ~ 21180217 (-)
G95526 NA other downstream 1275868 20570038 ~ 20571562 (-)
G95511 NA other downstream 1350566 20493642 ~ 20496864 (-)
G95510 nid1,nid1a,LOC107691203,LOC107750138,LOC107728305,LOC107689759 other downstream 1355354 20488785 ~ 20492076 (-)
G95520 NA other downstream 1360726 20479925 ~ 20486704 (-)
LOC122357128 NA other upstream 270490 22137388 ~ 22143970 (-)
tmem254 LOC107689576,LOC107653189,LOC107742085,LOC107711410 other upstream 284844 22151742 ~ 22156859 (-)
klc1b klc4,LOC107742075,LOC108263390,LOC106963894 other upstream 364551 22231449 ~ 22250313 (-)
G95932 NA other upstream 369206 22236104 ~ 22238570 (-)
G95936 lbh other upstream 429443 22296341 ~ 22297227 (-)

Expression


Co-expression Network