opn4a (opn4a,LOC107706026,LOC107696889,LOC107568552)


Basic Information

Item Value
gene id opn4a
gene name opn4a,LOC107706026,LOC107696889,LOC107568552
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8111653 ~ 8131883 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254708.1
ATGGATGACACATACCTTTAATATTCACAtgcttgtgatgtgtctgccaGTGATGATTGTGTGTCTAAATATCTCTGTGCGCTAGCTCAAACCCGTACACGTAACACTTGGAGTCCGTTGAGAATCATCCATTATATCTTTCAAGGATCGCGTGAAAGGCAGCATTGAATTGTTGAATGTGCGACGGTGCTTGGAATCTTTTTATATCTATGAAAACTCGCAGACTGAACGGAACCTGACATCTCTGCAGTCCTCTCTCTAATCTCCGGCTGGGAAGTGTTCTGGCGCGCGGCTCTCCGTCCGTTACGCGAGTGATGAGCGGCGCTGCGCGCTCGGTGAGGAAGGGCATCTCCTGTCCGACGCTGGACCCGAACTGCACGCGCATCGTGGAGAGCCTCTCCTCGTGGAACAACTCCGTGATGAGCGCGTACAGGCTGGTTGACTTACCCCCCACGACCACATCTGTTGCCATGGTGGAAGAATCCGTTTACCCTTTCCCAACAGTGGACGTGCCTGATCATGCTCATTACACTATTGGTGCGGTCATCCTTGCTGTTGGCATTACTGGCATGTTGGGCAACTTCCTGGTCATCTATGCATTTAGCAGgagtcGGACCCTGAGGACACCTGCCAACTTGTTCATAATAAACCTTGCTATCACAGACTTCCTCATGTGTGCCACCCAGGCACCCATCTTTTTTACCACCAGCATGCATAAAAGATGGATCTTTGGGGAAAAAGGTTGCGAGTTGTATGCATTCTGTGGGGCTTTATTTGGCATCTGCTCCATGATCACGCTCATGGTCATCGCTGTGGATCGATACTTCGTGATCACGCGGCCGCTAGCCTCCATCGGTGTGTTGTCTCAGAAGAGAGCTCTGCTGATTCTTCTGATAGCTTGGGCTTATTCACTTGGCTGGAGCCTGCCACCCTTCTTTGGCTGGAGTGCTTATGTTCCTGAAGGTCTGCTGACCTCTTGCACCTGGGATTATATGACCTTCACACCCTCTGTGCGAGCTTACACCATGCTCCTCTTCATCTTCGTCTTCTTCATTCCACTCATCGTCATCATCTATtgctatttctttattttccgATCCATTCGCAGCACTAATGAAGCTGTAGGCAAAATTAACGGGGATAACAAGAGAGACTCAATGAAACGATTTCAACGGCTGAAAAATGAATGGAAGATGGCGAAAATTGCTCTTATTGTCATTCTCATGTATGTCATCTCCTGGTCGCCGTATTCGACTGTGGCACTGACAGCTTTTGCTGGGTATTCTGATATGCTCACTCCGTATATGAATTCAGTCCCTGCTGTGATAGCCAAAGCTTCAGCAATCCACAATCCCATCATCTACGCCATCACACACCCCAAATACAGGTTGGCCATAGCGAAGTACATTCCGTTTCTTCGCGTGTTGTTGTGCATCCCCAAGCGTGACCTTCACTCGCTCCACAGCAGCTTTATGTCCACGCGTCGTTCCACCGTCACAAGCCAGTCCTCTGATATGTCAGGACAGTTTCGCAGAACCAGCACCGGCAAGTCCCGGCTCTCCTCAGCCTCCGACAGCGAATCTGGCTGGACGGATACCGAGGCCGATCTCTCGAGCATGAGCTCCAGGCCCGCCAGCCGGCAGGTGTCTTGTGACATCAGCAAGGACACGGCAGAGATGCCAGACTTCAAACCTTGTAACTCATCCAGCTTCAAGTCAAAGCTCAAAAGCCACGACTCGGGCATCTTTGAAAAGAGTTCCTCTGATGTGGAAGATGTGTCTGTGGTTGGACTCGTTCAGCCGGACCGTACTAACCCTTTAGCTGCTGGTGACGGTGCGGACGCGCCAATTTCAAGAGGTGCGATCGGTCGGATTCCCAGTATTGTCATCACCTCCGAGTCTAGCTCTTTCCTGCCCTCGGTTCGGCCCAGCTACAGAAGCAGCCGCTCAAGTGCGCATCCCCCCCGGAGAGACTCTCGTGGAGGAGTCCAGCAGGGGGCAGTGCATCTGTCCACTGCCGCTGAAACACCCGAGTCCGTTCGCTTACTAGACAACCCTCGCCCGCAGTATCTTTAGTGCTTACAGTTATAACTTTTCCCTCGCGGTCTCAATCTAACCTTCAAGCTTTGTGTTGGGGTTTGGTGTTTTTGTGAGTTATCCTGTTCTGTGGTTTATACCTTTAGTAAGGGGAACGTGAAATGAAGACAAACCCTGAGAAGACTGATCAGTGCTCTGTATCACAGAATGTAAAGTATGAAAGTCATACATTGGTGTCTTTTACGTGTGGTGACTCAACTCTTACATGGTGTCCAGCATCTCCTCTGTTTTAAGGAAACATTTAAGAGACAGTGAATGGAGAGAAAGGGCAcctcagaaaaatattttagtctGTCATCAGTGTCAAATGACATACACAGGTAATATCAGCTTACttaggattttttttgtgtgtttgctttagtaTTAAGCTTTAAATGTTAGTGTTTcttgtatattataaatgtaattttgaactttttgaccatttttattatgtaatttcaCCAGATAAGTATTTTACTATCTTTATTCAAAGCAAGACTTAACCTGAATGTTTTGCTTAAGAAGATCGTCTTAAGACtgcattatgtttgttttgctaaaaTGTTTGCTTCCACAGAACTTCAAGGTATAAAGCCAGAATCTGATCTTCACACTTAAAGCTACATgatgtaactatatatatataaacaagtgtgataaaaaaaaaagtgcggGGAAGAGGGTAAAATGCATCTTTCTTTACCTCAAAACACTTTGATAAACCTTTAATACTGATTTATAATTTAGACAAGAAATCATATACTTGTGTTCTTCTCCTGTGTTAATCATGTCATATATCAACTAGCTCTGGTGTTGTGAGCGTTTTTTCTAAAGTTTGTcagcacaaatgaaaaaaattaccaaaaaaaaaaactgtattaaaaacaaaggaacctatatatatattatatatatggtCTAGTaagaaactgtgtgtgtgtagtgtataCACCAGTGCCTAAAATAGCATTCATTCGCGCAGAGGGAGGGCCGAGGCGCCATCTTTTTACTCATGCAGTTCTACTTTGCTACCGCTAGAGGGCCGGAAGTTATTTAGAGCTTGTCCAAATACCCCAAATGAAGCATAAAGATAGCAAGCTTCTGtaattcctcctcctcctgacCTCAAGAGTTTTTGGAAAGCATTGTAGTGaggtttttttgtcttttgagttTGACtaaatgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaattccTGTAATATTACTAACGGCCTCTGAAAGTAACAGTCTTGTGCAATAGGACTCCAAGAACTTCAGCTTTACGAATgtggtatttattttgttatcataGTTTAAATATGAGCTATATCACATTAGAAACAAAACTTTTACTGCAAAGCATCTGTCTATCATCTGTTGAAATGATTTAATTGAAGGACTGAAAGATTTCTCCATTGCTTTGGGAAAGCACACGAGCAGAGACTCATCATTATCTCTCTAAATCACAGACAGAGCCACTTCGTGTCATACATGCTGCGTGTGTTTCCATGAATGCCTGATGAATATCGATCCCCCTCCGCAGCCGTGTCGTTTTTGCTGTTCTTCATGTTTCGCATTCACTTTAGAGTACGCGATTATATTCAGCTGTTAATGTTTTGAAGAGTTATGTTGCCTTTGTGCTCGGTGACTGGATGTAACACGGAAGTGACGGTGGCTGCTCTTCTAGATGGCTCTGGAAGACACGgtttagcaaataaatattgtggCGCTCTTAAGAGTTACCTAGTTTTAGCTTGTTCTTCGGTGGTTCGTTTGTAAACAAAAGAGATATTTATATGTCCATATGAC
>XM_043254709.1
TCACAGGGCTACTACGGCGCGCGCtgacacagttttttttttcctgccacGAGCTCGCAGACTGAACGGAACCTGACATCTCTGCAGTCCTCTCTCTAATCTCCGGCTGGGAAGTGTTCTGGCGCGCGGCTCTCCGTCCGTTACGCGAGTGATGAGCGGCGCTGCGCGCTCGGTGAGGAAGGGCATCTCCTGTCCGACGCTGGACCCGAACTGCACGCGCATCGTGGAGAGCCTCTCCTCGTGGAACAACTCCGTGATGAGCGCGTACAGGCTGGTTGACTTACCCCCCACGACCACATCTGTTGCCATGGTGGAAGAATCCGTTTACCCTTTCCCAACAGTGGACGTGCCTGATCATGCTCATTACACTATTGGTGCGGTCATCCTTGCTGTTGGCATTACTGGCATGTTGGGCAACTTCCTGGTCATCTATGCATTTAGCAGgagtcGGACCCTGAGGACACCTGCCAACTTGTTCATAATAAACCTTGCTATCACAGACTTCCTCATGTGTGCCACCCAGGCACCCATCTTTTTTACCACCAGCATGCATAAAAGATGGATCTTTGGGGAAAAAGGTTGCGAGTTGTATGCATTCTGTGGGGCTTTATTTGGCATCTGCTCCATGATCACGCTCATGGTCATCGCTGTGGATCGATACTTCGTGATCACGCGGCCGCTAGCCTCCATCGGTGTGTTGTCTCAGAAGAGAGCTCTGCTGATTCTTCTGATAGCTTGGGCTTATTCACTTGGCTGGAGCCTGCCACCCTTCTTTGGCTGGAGTGCTTATGTTCCTGAAGGTCTGCTGACCTCTTGCACCTGGGATTATATGACCTTCACACCCTCTGTGCGAGCTTACACCATGCTCCTCTTCATCTTCGTCTTCTTCATTCCACTCATCGTCATCATCTATtgctatttctttattttccgATCCATTCGCAGCACTAATGAAGCTGTAGGCAAAATTAACGGGGATAACAAGAGAGACTCAATGAAACGATTTCAACGGCTGAAAAATGAATGGAAGATGGCGAAAATTGCTCTTATTGTCATTCTCATGTATGTCATCTCCTGGTCGCCGTATTCGACTGTGGCACTGACAGCTTTTGCTGGGTATTCTGATATGCTCACTCCGTATATGAATTCAGTCCCTGCTGTGATAGCCAAAGCTTCAGCAATCCACAATCCCATCATCTACGCCATCACACACCCCAAATACAGGTTGGCCATAGCGAAGTACATTCCGTTTCTTCGCGTGTTGTTGTGCATCCCCAAGCGTGACCTTCACTCGCTCCACAGCAGCTTTATGTCCACGCGTCGTTCCACCGTCACAAGCCAGTCCTCTGATATGTCAGGACAGTTTCGCAGAACCAGCACCGGCAAGTCCCGGCTCTCCTCAGCCTCCGACAGCGAATCTGGCTGGACGGATACCGAGGCCGATCTCTCGAGCATGAGCTCCAGGCCCGCCAGCCGGCAGGTGTCTTGTGACATCAGCAAGGACACGGCAGAGATGCCAGACTTCAAACCTTGTAACTCATCCAGCTTCAAGTCAAAGCTCAAAAGCCACGACTCGGGCATCTTTGAAAAGAGTTCCTCTGATGTGGAAGATGTGTCTGTGGTTGGACTCGTTCAGCCGGACCGTACTAACCCTTTAGCTGCTGGTGACGGTGCGGACGCGCCAATTTCAAGAGGTGCGATCGGTCGGATTCCCAGTATTGTCATCACCTCCGAGTCTAGCTCTTTCCTGCCCTCGGTTCGGCCCAGCTACAGAAGCAGCCGCTCAAGTGCGCATCCCCCCCGGAGAGACTCTCGTGGAGGAGTCCAGCAGGGGGCAGTGCATCTGTCCACTGCCGCTGAAACACCCGAGTCCGTTCGCTTACTAGACAACCCTCGCCCGCAGTATCTTTAGTGCTTACAGTTATAACTTTTCCCTCGCGGTCTCAATCTAACCTTCAAGCTTTGTGTTGGGGTTTGGTGTTTTTGTGAGTTATCCTGTTCTGTGGTTTATACCTTTAGTAAGGGGAACGTGAAATGAAGACAAACCCTGAGAAGACTGATCAGTGCTCTGTATCACAGAATGTAAAGTATGAAAGTCATACATTGGTGTCTTTTACGTGTGGTGACTCAACTCTTACATGGTGTCCAGCATCTCCTCTGTTTTAAGGAAACATTTAAGAGACAGTGAATGGAGAGAAAGGGCAcctcagaaaaatattttagtctGTCATCAGTGTCAAATGACATACACAGGTAATATCAGCTTACttaggattttttttgtgtgtttgctttagtaTTAAGCTTTAAATGTTAGTGTTTcttgtatattataaatgtaattttgaactttttgaccatttttattatgtaatttcaCCAGATAAGTATTTTACTATCTTTATTCAAAGCAAGACTTAACCTGAATGTTTTGCTTAAGAAGATCGTCTTAAGACtgcattatgtttgttttgctaaaaTGTTTGCTTCCACAGAACTTCAAGGTATAAAGCCAGAATCTGATCTTCACACTTAAAGCTACATgatgtaactatatatatataaacaagtgtgataaaaaaaaaagtgcggGGAAGAGGGTAAAATGCATCTTTCTTTACCTCAAAACACTTTGATAAACCTTTAATACTGATTTATAATTTAGACAAGAAATCATATACTTGTGTTCTTCTCCTGTGTTAATCATGTCATATATCAACTAGCTCTGGTGTTGTGAGCGTTTTTTCTAAAGTTTGTcagcacaaatgaaaaaaattaccaaaaaaaaaaactgtattaaaaacaaaggaacctatatatatattatatatatggtCTAGTaagaaactgtgtgtgtgtagtgtataCACCAGTGCCTAAAATAGCATTCATTCGCGCAGAGGGAGGGCCGAGGCGCCATCTTTTTACTCATGCAGTTCTACTTTGCTACCGCTAGAGGGCCGGAAGTTATTTAGAGCTTGTCCAAATACCCCAAATGAAGCATAAAGATAGCAAGCTTCTGtaattcctcctcctcctgacCTCAAGAGTTTTTGGAAAGCATTGTAGTGaggtttttttgtcttttgagttTGACtaaatgcaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaaaattccTGTAATATTACTAACGGCCTCTGAAAGTAACAGTCTTGTGCAATAGGACTCCAAGAACTTCAGCTTTACGAATgtggtatttattttgttatcataGTTTAAATATGAGCTATATCACATTAGAAACAAAACTTTTACTGCAAAGCATCTGTCTATCATCTGTTGAAATGATTTAATTGAAGGACTGAAAGATTTCTCCATTGCTTTGGGAAAGCACACGAGCAGAGACTCATCATTATCTCTCTAAATCACAGACAGAGCCACTTCGTGTCATACATGCTGCGTGTGTTTCCATGAATGCCTGATGAATATCGATCCCCCTCCGCAGCCGTGTCGTTTTTGCTGTTCTTCATGTTTCGCATTCACTTTAGAGTACGCGATTATATTCAGCTGTTAATGTTTTGAAGAGTTATGTTGCCTTTGTGCTCGGTGACTGGATGTAACACGGAAGTGACGGTGGCTGCTCTTCTAGATGGCTCTGGAAGACACGgtttagcaaataaatattgtggCGCTCTTAAGAGTTACCTAGTTTTAGCTTGTTCTTCGGTGGTTCGTTTGTAAACAAAAGAGATATTTATATGTCCATATGAC

Function

symbol description
opn4a Enables photoreceptor activity. Acts upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of plasma membrane. Is expressed in heart; nervous system; and testis. Orthologous to human OPN4 (opsin 4).

NR:

description
PREDICTED: melanopsin-A isoform X1

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0009584 detection of visible light biological_process
GO:0007601 visual perception biological_process
GO:0007602 phototransduction biological_process
GO:0018298 protein-chromophore linkage biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008020 G protein-coupled photoreceptor activity molecular_function

KEGG:

id description
K04255 OPN4, Rh2_7; r-opsin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254708.1 True 3949 mRNA 0.44 12 8111653 8131883
XM_043254709.1 False 3786 mRNA 0.45 11 8113731 8131883

Neighbor

gene id symbol gene type direction distance location
usp54a usp54a,LOC107706032,LOC107696887,LOC107568551,LOC107601774 coding upstream 4108 8061482 ~ 8107545 (+)
myoz1a myoz1a,myoz1,LOC107696874,LOC107726982,LOC107601804,LOC107666563,LOC107743622,LOC107568548 coding upstream 50744 8055209 ~ 8060909 (+)
synpo2la LOC107726984,LOC107666427,LOC107601816,LOC107743568,LOC107696886 coding upstream 58088 8043487 ~ 8053565 (+)
camk2g2 camk2g2,camk2g,LOC107743569,LOC107666428,LOC107726985,LOC107696884,LOC108410509,LOC106959359 coding upstream 70522 7991510 ~ 8041131 (+)
si:dkey-174i8.1 LOC107743623,LOC107568550,LOC107568549,LOC107696867,LOC106576967 coding upstream 122836 7982129 ~ 7988817 (+)
ldb3a ldb3,LOC107706030,LOC107666486 coding downstream 4701 8136584 ~ 8171251 (+)
bmpr1aa bmpr1aa,LOC107743563,LOC107666410,LOC107696892,LOC107706029,LOC107563048 coding downstream 39888 8171771 ~ 8191092 (+)
sncga sncga,LOC107601819,LOC107666408,LOC107725452,LOC107743564,LOC107563049,LOC108438198 coding downstream 84056 8215939 ~ 8222627 (+)
zgc:193505 NA coding downstream 91887 8223770 ~ 8225251 (+)
nfkb2 LOC107725448,LOC107601822,LOC107666457,LOC107743559,LOC107563053,LOC107696896 coding downstream 106531 8238414 ~ 8256098 (+)
LOC122356873 NA non-coding upstream 375 8108341 ~ 8111278 (+)
G91681 NA non-coding upstream 286312 7823282 ~ 7825341 (+)
G91673 NA non-coding upstream 301549 7809871 ~ 7810104 (+)
G91594 NA non-coding upstream 1064406 7046941 ~ 7047247 (+)
G91545 NA non-coding upstream 1168858 6942567 ~ 6942795 (+)
G91809 LOC107666404,LOC107706028,LOC107601778,LOC107563047,LOC107696890,LOC107743562 non-coding downstream 60443 8192326 ~ 8194318 (+)
G91825 NA non-coding downstream 137428 8269311 ~ 8269581 (+)
G91826 NA non-coding downstream 139279 8271162 ~ 8271394 (+)
G91828 LOC107725451,LOC107743558,LOC107696897,LOC107601823 non-coding downstream 149688 8281571 ~ 8282001 (+)
G91829 si:ch211-150i13.1,LOC107725451,LOC107743558,LOC107563050,LOC107696897 non-coding downstream 150272 8282155 ~ 8282587 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 224963 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 272708 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 324346 7771560 ~ 7787307 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other upstream 964435 7093144 ~ 7147218 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 1753636 6254603 ~ 6358017 (+)
G91833 slc37a1 other downstream 174603 8306486 ~ 8310824 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other downstream 534384 8666267 ~ 8683052 (+)
sf3b5 sf3b5,LOC107601807 other downstream 607153 8739036 ~ 8740095 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 894060 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 948965 9080848 ~ 9089121 (+)

Expression


Co-expression Network