LOC122356208 (pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880)


Basic Information

Item Value
gene id LOC122356208
gene name pcgf6,LOC107588739,LOC107707701,LOC107656932,LOC107585366,LOC107673880
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10299157 ~ 10305442 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254716.1
CTAGAGTCTCGCGCGCTCACCGTGAAGGTGCACAAGTAGACCGAAGTGTTTTTAAACTTGTGCCTGAAATTTACCGTCCGCGACTGACCTCGAATGAAGCCTTCCACTCGCTCCACAGACGGCAGACAGGCATCCGTGGTAGTTCTGCAGTAGTTTTGAGGGCTTCGCTCTTTGGCTGCGCTATGGACGGAACTGCGCGCAGACTTGTGGAGGAGGGATCCACGCGTGGGTCCTCTCGGGCAGACGCTTCCCTCAGCGGAGAGGATGAGCGCCGTGACACCGGCCACCACCCGAGACCTCACGAAACGCATCCCGACGACGAGCGCACCTTGCCTCTTAGGGAATTTTATCCCTATATTCGCTGTGCCCTCTGCAATGGATTTTTCATTGATGCCACCACCATCACAGAGTGTCTTCACACTTTTTGCAAGAGCTGCATTGTCAAGCACTTTTTCTACAGCAACAGGTGTCCTAACTGCTCCATTGTTGTGCACCAGACACAGCCACTGTACAGTATCAGaCCCGACAGGCAATTACAAGACATTGTTTTCAAGATGGTTCCATATTTGGAAGAAGATGAAAGGTCACgaatacatgcattttataaacAGAGAGGGCTTGACATTCCTAGACCAGTGGCATCTCCAGCTTCATACCCAGTGAAGCTTCCCCAGAGACTGAAGAAAGACATGCTGCCTCGGTCTGTTTTTACTATTCCCTCAGAGTTAGATGTGTCTCTGATGTTGGAGTTTGTGGGAGCTGAAAAGGGTATTGAGAACTATAAGCCCCTTGAGAGGAAGTATGTGCGTGTGTCAGGGGAAGCCACTGTCCGTCACGTGGAGCTTTTTATCAGGAGGAAGATGGAACTGAATCAAAACTGCAAGGTTGATGTTGTGTGTGGAGAGCATCTTCTTGAACAATGCCAGTCTTTGAGAGAAGTTTGTGACACCATGGGGGAAAATGCACTGCAGGATGGCATGCTGGTTCTGCATTGACTCGTTCTACCTGCTCAGTAAAGACAGAATGAAACTACCTTATATagggattttattttaagagctCTACTGAATTTTACCATAATAGTTCTATGCAGTGATTCTTTGTCTTCCTGGTTGTCTTCTGCTCAATGTGATTAAACGCATGTCAGCATTCTTTGAGCAAATGCATTAAGAAACATTAGAGCTGATTAGATATTTTcagatgttgtttgtttgtttgtttgttggtgggtttgattttattgtttgtttgaattcattgtttctttgattgattgattgagtaaCTGTAAAGATTCTGTAAATTctcttttatacatttgtaaacTAAGATAAACAGAGATTAAGTAATTGCTCTTTGTTTCTTAGAATACATAGTTTTGACATGAA

Function

symbol description
pcgf6 Predicted to enable metal ion binding activity. Predicted to be involved in histone H2A-K119 monoubiquitination and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within negative regulation of transcription, DNA-templated. Predicted to be part of PRC1 complex. Is expressed in gonad; nervous system; and pharyngeal arch. Orthologous to human PCGF6 (polycomb group ring finger 6).

NR:

description
PREDICTED: polycomb group RING finger protein 6-like isoform X1

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K11470 PCGF6, MBLR; polycomb group RING finger protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254716.1 True 1388 mRNA 0.45 11 10299157 10305442

Neighbor

gene id symbol gene type direction distance location
LOC122356762 vrk2,LOC107718826,LOC107693217,LOC107560458,LOC107585344 coding downstream 219989 10066925 ~ 10079168 (-)
papolg papolg,LOC107601893,LOC107726947,LOC107666450,LOC107559338,LOC107743495 coding downstream 692654 9596826 ~ 9606503 (-)
rel LOC107726948,LOC107666554,LOC107601890,LOC107655447,LOC107559337,LOC107743496 coding downstream 704917 9584404 ~ 9594240 (-)
pdlim1 pdlim1,LOC107666525,LOC107726967,LOC107601889,LOC107655446,LOC107743498,LOC107559336 coding downstream 724582 9569098 ~ 9574575 (-)
sgpl1 sgpl1,LOC107726953,LOC107601887,LOC107655444,LOC107559334,LOC107666355 coding downstream 735084 9553287 ~ 9564073 (-)
LOC122356628 LOC107707586,LOC107588654,LOC107688299,LOC107716331,LOC107673895,LOC107585321 coding upstream 40015 10345457 ~ 10349224 (-)
chata chata,LOC107588646,LOC107683741,LOC107707518,LOC107716339,LOC107673961,LOC107585314 coding upstream 329523 10634965 ~ 10641860 (-)
slc18a3a slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 coding upstream 337117 10642559 ~ 10645119 (-)
rgra rgr,rgra,LOC107588645,LOC107585363,LOC105909826,LOC100696641 coding upstream 346388 10651830 ~ 10658909 (-)
cdhr1a LOC107588642,LOC107707459,LOC107683738,LOC107585311,LOC107673943,LOC107716342 coding upstream 363584 10669026 ~ 10702097 (-)
LOC122357134 NA non-coding downstream 5223 10275545 ~ 10293934 (-)
G92551 nt5c2a,nt5c2,LOC107716328,LOC107673949 non-coding downstream 25654 10271415 ~ 10273503 (-)
G92550 NA non-coding downstream 49432 10248920 ~ 10249725 (-)
G92548 NA non-coding downstream 56096 10240266 ~ 10243061 (-)
LOC122356802 NA non-coding downstream 248774 9699013 ~ 10050383 (-)
G92575 NA non-coding upstream 10254 10315696 ~ 10415232 (-)
G92582 NA non-coding upstream 23180 10328622 ~ 10329585 (-)
G92584 LOC107588657,LOC107688297,LOC107707596,LOC107585322 non-coding upstream 25785 10331227 ~ 10333599 (-)
G92610 NA non-coding upstream 112083 10417525 ~ 10417809 (-)
G92639 NA non-coding upstream 269345 10574787 ~ 10575234 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 107391 10174413 ~ 10191766 (-)
G92267 NA other downstream 1183606 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 2251256 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 2482778 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 3799584 6453531 ~ 6499573 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 326808 10632250 ~ 10634566 (-)
G92819 NA other upstream 619502 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 895110 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 1219961 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 1338488 11643930 ~ 11648035 (-)

Expression


Co-expression Network