olig4 (olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107655687,LOC107585473)


Basic Information

Item Value
gene id olig4
gene name olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107655687,LOC107585473
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 18083502 ~ 18113478 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254717.1
GACAGTGAATCTCTTGCATGTCTTTCACTCTCCATTATATCAGTACAGAGTTGTTATATAACAAGCCAGAGAGATTCTCCTCGATTCTCCCCAGTGGGATTCTGGGCACCTGATCTCATGACTTCATCCCTCACAACATCAGGAACAGAACAAAAGTTTGTCCCCCGGCTCCTGCGGGGCCCCCGAGCGAGCGCTTTTGGGGTTCACGGCGCGGCGACCTCTGAGGAGATGCGGCGACGTCCTGAACTCTTCGGCTTCAAAGAGATCTGCAGGGGGGGGCGGAGCTCAGACGACCTACGAACTGAGCTCTCAGAGAAAGAAGCTGCGCCTTAGCTtgactttttaaactttgcGCATGTGGATTGTCTTCGAGAAGATTGCAAGCTCTCAACCAAGACTTTGCGGAAACAGCTTTAAGATGGATTCTGACGCAAGCTCCACATGCAGTCGGTCTTCTTCGCCGGAGCTGGCAGTGGACTCCAGCTTTTTTTCCAACAAGGTGTTTCAAGCCTACTGCGCAGAGAGAAACGGGCAGCCCAGGTCTGACAAAACACCACAGGGCACCGGATCCGCTGGAAAGACCAGAGCTCGGGGCGATCTCTCCAAAGACGACCTGCAAGACCTGAGACTCAAAGTGAACAGCCGTGAACGCAAACGCATGCATGACCTCAACCAGGCCATGGACGGGCTCCGAGAGGTGATGCCCTACGCGCAGGGCCCATCCGTACGAAAGCTGTCCAAAATCTCCACCCTGCTCCTCGCCAGAAACTACATCCTCATGCTGTCCAGCTCTCTGGAGGAGATGAAGAAGCTAGTAGGTGATGTTTATGGAGCCAGCAATCAGAGTCACTCGGCTAGACGGGCTGCTCCGGCATCCCAGTTGCCTCTTCTTTCACTCGCCCCGTCTCTGCACTCTCTGGTGGGCAGCACTTCCCAGCACACCTCTACACCGACGGTGGCCCAAGCCCCTCATTCTCCACCTTCTGCTGGGTATCTGGGTTTCCCCGCTCCACCTCTTCCCACCCTGCTGAAAGACCCTCTGCATCTCTCCAGCAGCTACAGGCATTTCCCCGGCATGCCTTGTCCCTGCTCCCTCTGCCAGCCTCTCCCTGCTTCCACGGCCAGCCTGCACAGCCTCTCCATGGGGAAGTGACTTAGGCGAGGCCCAGGCTCCAGGCTGGAGTAGGCCGAAGTTAAAATACGGACTCAAGAAGAACTGAAAACATCTGGATGCGTTTCTAGATGTGTTgtaaacattgtaaatgtcctgtacagaatttcttttttaacaagctgctgctatttttatatcaaaGAATGTTTTGTACCATTATATAGCGTTTTTGAATAGTCACTGTTTGAACATATGTGCTTGTATGTTCTTTGTAGCAAAATGGCAATTGAAAACGTAtagttttgtttcttaaattaaatgtctattattataatgaaaaataccCAGATTTTTCAGTGT

Function

symbol description
olig4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within regulation of neuron differentiation. Predicted to be active in nucleus. Is expressed in several structures, including DEL; axis; nervous system; neural plate; and neural tube.

NR:

description
PREDICTED: oligodendrocyte transcription factor 3

GO:

id name namespace
GO:0045664 regulation of neuron differentiation biological_process
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254717.1 True 1474 mRNA 0.51 4 18083502 18113478

Neighbor

gene id symbol gene type direction distance location
LOC122356940 LOC107734282,LOC107734283,LOC107597647,LOC107575482,LOC107679140 coding upstream 10401 18045897 ~ 18073101 (+)
LOC122356284 s100pbp coding upstream 40319 18037537 ~ 18043183 (+)
ldlrap1b ldlrap1b,LOC107667965,LOC107597650,LOC107561785,LOC107724600,LOC107734307 coding upstream 46638 17996931 ~ 18036864 (+)
maco1b tmem57b,LOC107734295,LOC107561778,LOC107679154 coding upstream 89364 17980379 ~ 17994138 (+)
tmem50a tmem50a,LOC107724601,LOC107667962,LOC107734296,LOC107679157 coding upstream 109838 17968063 ~ 17973664 (+)
bsdc1 bsdc1,LOC107655506,LOC107585415,LOC107734300 coding downstream 6233 18119711 ~ 18126476 (+)
LOC122356837 LOC107597643,LOC107679211,LOC107724630,LOC107679207 coding downstream 146719 18260197 ~ 18261280 (+)
LOC122356838 LOC107597643,LOC107679211,LOC107724630 coding downstream 151149 18264627 ~ 18267834 (+)
LOC122356945 marcksl1a,LOC107597644,LOC107679202,LOC107734268,LOC107724621,LOC107655702,LOC107585455 coding downstream 254836 18368314 ~ 18371353 (+)
tmem63ba LOC107679181,LOC107733349,LOC107655531 coding downstream 630528 18744006 ~ 18771823 (+)
G94637 NA non-coding upstream 193601 17889654 ~ 17889901 (+)
G94543 NA non-coding upstream 838533 17212947 ~ 17244969 (+)
G94501 NA non-coding upstream 1053427 17021864 ~ 17030075 (+)
G94484 NA non-coding upstream 1144848 16926914 ~ 16938654 (+)
G94481 NA non-coding upstream 1158365 16886084 ~ 16925137 (+)
G94741 NA non-coding downstream 48499 18161977 ~ 18162280 (+)
LOC122356621 NA non-coding downstream 149830 18263308 ~ 18264596 (+)
G94750 NA non-coding downstream 150046 18263524 ~ 18270603 (+)
G94753 NA non-coding downstream 260085 18373563 ~ 18375173 (+)
G94785 NA non-coding downstream 406162 18519640 ~ 18519911 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other upstream 507564 17560296 ~ 17575938 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other upstream 1478119 16597781 ~ 16605383 (+)
G94324 NA other upstream 1564676 16515827 ~ 16518826 (+)
nkx1.2la nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237 other upstream 2178593 15901540 ~ 15904909 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 2206080 15873444 ~ 15877422 (+)
G94760 NA other downstream 325695 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 423414 18536892 ~ 18537443 (+)
G94776 NA other downstream 431874 18545352 ~ 18631718 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other downstream 1042804 19156282 ~ 19170027 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other downstream 1442120 19555598 ~ 19590284 (+)

Expression


Co-expression Network