prdm8 (prdm8,LOC107708270,LOC107668783,LOC107588729,LOC107673884,LOC107548615,LOC107757101)


Basic Information

Item Value
gene id prdm8
gene name prdm8,LOC107708270,LOC107668783,LOC107588729,LOC107673884,LOC107548615,LOC107757101
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11482519 ~ 11486234 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254723.1
TCAGCGTGGATAAGTGCGTGACTGCGCAGCGCGAGAGACAGTCCAGAGACTGTCAGGATCAGGAGACGGTCGTGATCGCGCTCTCTGTGGATAATTAGACTGTGCACCTGCTCCGGAACATCCTCTACCCAAAACCTGCTATAAATACGAATAAAACATGGAGCAAAGTATTATTCCTCGCTCCTTGTGGACTAACGACAGCAAATTTCTCCACCACCATGTCACGGACTTCTTCACCAGTGTACAAGTTACACAGGATATACCAGCTGGAACATCATTCGGACCTTGTGTTCTTCATAATACCTTTTATGACACCATAGCCTTCATTGGATTGAAGTCCTTTGACAAACGGAATAAATCATATGTGTTTCGGGTAGACCCTGAGGCAATGAAAGGTTCTCCATTAGTAGTTCCTTGGCTACGGTTAGTACAGGCTGCAATGAGCACAGAAGACCAGAATACTGAGGCCTACTTAAAAGGAGGACAGCTGCACTTTCGGACTATTCGAGATGTGAAACAAGGGGAAGAACTGCTTGTTTGGTATGATGAGGAGTTGTCACATCTTTTGGGGTTTgaagacataaaaacaaaagctctgACAGATGGATACACATGTACCAGATGTGGCCAGGCCTTCAAGAATGAAAACCCTTTCCTTGCCCACTGCCGTTTTTTATGTGCACAGGAAAAAGTAGACATCATCCGACCGACCAACGAACAGAAACCAGAAATCAAGCGACAACGCAAAATCATAGATTTTCATAACATTGCGAGAGACCTGGAGCACAAAATGAGCGGTTCTCCAGAAGACCCGGGCGTTcctagaaaaagaaaacaagagggCTCCCTAAGTCCCCGGagcaaaaaaactgttttattagagAAAACCAACATCACGAATCACGACAACACAACCAACGTCAACAAAGACTGTGCGCCTTTCCAGGATTTGTCAGAATCTGATAAATTATCAACAAACGAGTCGAAGATAAGTAAAAGCAGCGCATTTACCGAGGTTCAAAAACCAGCAGAGCAGTCAAACCCCAAGCGGTTATCCCGGGATGTAATGGCGCCTGAAGCAGGCCTGCAATCAGACTGCAGCGCCTTCTCATTCGTTGTACCGAAAAGCGCGCAATCGGAACAGAAGAGCGCGTTTTGTGAACCCAACAAACGCACCATCACCGAAGTTCAGAATCCCTCGCCGGCACGTTCGGATGAAATCTCAGACTCTTTCAAATCGAAACCTTCATTGGGATACAGAAACGTATTGGCTTCGCACCTGTTTCAAGCTGACTTGTCAAGCGCTCACGCAGGTGGAGCGATGTCCTCTCCGCTGGCTTCAGGAGGATCCTTTTATTACGCTCCCGAGCACTGGACCAGATCTATAGGTGGCCAGCTGCAGTCTACATCTTCTTTGACACTTCTGCCCCCCACTTACACACCGCTGAGTGTTTCGGTGCAGAACTGGTGCGCCAAATGCAACCTCTCGTTCCGAATGACCTCCGACCTGGTGTTTCACATGAGGTCCCATCATAAGAAAGAGTTCGCCGCAGAGGCTcaggtgaggaggaggagggaagaGAAACTCACCTGTCCCATCTGTCACGAGTACTTTCGAGAGCGTCATCACCTCTCACGTCACATGACATCACATAATTAAGAAGAAAAACTCCATCGCACTTTAACCAGGTACATACaagtaattaaaatgcattgaccataaattatgcatttacagTGTGATGGTCCCTTGGAGCTACCCAACTGACAAAAATACGTTCCAAGATCGTTTTGCTAATGTTCCCGAGATATGAAAACGTGTTTACGTAGTGTTCTCTGActcagtttttaatgtttgaaaaacgCAGCTGTAAGAACCTTAAGGGAGCCATCCATTTTATAAGTTTGCAAACATTATGGGAATGTTATGTTTGACTGGACATGCTAAAACAGGTTAGACGAACAGTCagctaaaacattttgaaattccAGGTAATACATTCgagttttgagaacattaaAGTAAACTTTCTATTAACGTTGTTCAGAGAACGATGCCAGAATGTTTTGAGAACGTTCTCTGTTCGCCCGGCGGCATTTAGGTTATAAGAAACACTGTCAGAATATTCCGAGAACATTTTCTGTTAACTGGGTAGGTTGCTATTGGACAGGGGAAGTATTTTCCTGTAGCAATACATTACAGACTGACTAAAAACTTTTCAACCATTTACCTTTGGTAAAGATTCGTTATCTCTTTCTCCAAAGGTCAGAGTcatttatgtaatgtaatattttaaacggTGGGCTTTGGTAGTGCAATTCAGGATAGGCCTATATCGCCACTAGGTGGCTGTAGACATGAATAACTTTCTCTTTAGAGGTAGCTGTACCTAGTACATTTAGTTGTGACTAATACTGTTGAACTGCCTGGTCATTTTAACTTAACAGTGCCTTACAAAGTCAGGATGAGTACATATAAATGCTATTGAAAAACTGTAGAATAAAATGCTCTAGCATTTTTAGGTTTGCTAACAGTTGAAACTATTATAAACTAATAGCATTGCTTTGTACAgagattttatatttgaaatatccATCCCTTCAGAAAGCCAAATCTTTGTTACAAAGTTCTTTTCAGATGTCCacttctttttaacatttttttttagcagcacAGCGACAAGgaggatgtatttatttaattatgttcttgttctgttcttttctgaGATAAGTACAGTCATtgtatttcattaaagaatctgAGCATA

Function

symbol description
prdm8 Predicted to enable metal ion binding activity. Predicted to be involved in oligodendrocyte development and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in nervous system; neural plate; and neural tube. Human ortholog(s) of this gene implicated in progressive myoclonus epilepsy 10. Orthologous to several human genes including ZNF488 (zinc finger protein 488).

NR:

description
PR domain zinc finger protein 8-like

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0014003 oligodendrocyte development biological_process
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
K20797 PRDM8; PR domain zinc finger protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254723.1 True 2771 mRNA 0.43 4 11482519 11486234

Neighbor

gene id symbol gene type direction distance location
mapk8a mapk8a,LOC108443371,LOC107707207,LOC107588610,LOC107673914,LOC102796928 coding downstream 57341 11414223 ~ 11425178 (-)
wdfy4 wdfy4,LOC107707224,LOC107668800,LOC107757102,LOC107673934 coding downstream 100208 11341254 ~ 11382311 (-)
LOC122356689 LOC107668812,LOC107588612,LOC107707231,LOC107757103,LOC107548607 coding downstream 157815 11312167 ~ 11324704 (-)
tmem72 tmem72,LOC107707262,LOC107757114,LOC107564361,LOC107673868,LOC107668804,LOC107588619 coding downstream 258703 11219603 ~ 11223816 (-)
LOC122356100 si:dkey-275b16.2,LOC107588698,LOC107708014,LOC107757157,LOC107564350,LOC107668834 coding downstream 283439 11194486 ~ 11199080 (-)
rrp12 rrp12,LOC103399548 coding upstream 23004 11509238 ~ 11519335 (-)
ubtd1a ubtd1a,ubtd1,LOC107708242,LOC107673956,LOC103038242,LOC107548628 coding upstream 33852 11520086 ~ 11525260 (-)
pgam1a pgam1,pgam1a,LOC107668811,LOC107548630,LOC107707176,LOC107673951,LOC107700858,LOC103038634 coding upstream 47216 11533450 ~ 11540103 (-)
rtn1a rtn1a,LOC107668786,LOC107707153,LOC107588606,LOC107757140,LOC107548601,LOC107673903 coding upstream 71125 11557359 ~ 11577350 (-)
dhrs7 dhrs7,LOC107588602,LOC107548599,LOC107588604 coding upstream 116386 11602620 ~ 11606263 (-)
G92935 NA non-coding downstream 69266 11412183 ~ 11413253 (-)
G92934 arhgap22,LOC107588697,LOC107668831,LOC107708000,LOC107673870,LOC107548604 non-coding downstream 71080 11410630 ~ 11411439 (-)
G92842 NA non-coding downstream 219882 11257080 ~ 11262637 (-)
G92848 NA non-coding downstream 333267 11146178 ~ 11149252 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding downstream 488721 10989282 ~ 10993798 (-)
G93062 NA non-coding upstream 138564 11624798 ~ 11625140 (-)
G93063 NA non-coding upstream 143206 11629440 ~ 11629749 (-)
G93099 NA non-coding upstream 251783 11738017 ~ 11738231 (-)
G93111 NA non-coding upstream 315781 11802015 ~ 11802286 (-)
LOC122356216 NA non-coding upstream 418534 11904768 ~ 11938181 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other downstream 263534 11200552 ~ 11218985 (-)
G92819 NA other downstream 547188 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 847953 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 1290753 10174413 ~ 10191766 (-)
G92267 NA other downstream 2366968 9115093 ~ 9115551 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 39169 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 157696 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 285194 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 792220 12278454 ~ 12293594 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other upstream 942963 12429197 ~ 12430778 (-)

Expression


Co-expression Network