nkx3.3 (nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953)


Basic Information

Item Value
gene id nkx3.3
gene name nkx3.3,LOC107747300,LOC107665572,LOC107586090,LOC107579953
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 15743917 ~ 15748460 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254746.1
GATTGTCCCCTTCAATTCAATAATATCTAGCCCAcatttaactgtttaataaaaaacgcgtgtaaaaaaaatagtttgacatAATTTGTCAAAATGTTGTGAGTGGCATAACCATAACGAGGGAAGCCATTTTACTGTCCTTTggcataataatcataatacaGGCTTACAGGTTTCCCTTTAGACCTTCATGACTGTGTCAAgtcgttttttttaatatcgtAAAACATGTTGACCGCATTTATTAAAAGACGCGTTTTCTATCGTTTTTGTATACCGTTTGAAAACGCCATGATTGTCGTCTACACCCGCGGGTTTAAGTACACTGTATGGGCTAAAAATGTATATCTCTTTTAGAGAAAATGccacgtttttttttacatataagaaaaaaaacaaaagcaaagacATACAGGGCTTCCGCTATGCGTTTTATGCAGCCTATAAAAAACACATTCCCTGTTTGTCGTCTCAGGCACGCTTGTTTGTCATCGAAAAACGTCCTTTAAACTCAACAAAGCCAGCGAGAGCATGTGGTAGTAAACCGAATTCGATGGGTATTCAATTCTACTCGTCTATTTCGGAGGGAGGAGCGAAACGCTCCAGTGAGCGCCACGGGCAACGCGTCTGAAAGGGAAAGAGAGGAAACTGACGCACGCGTGGCATTTTCTGACACTTTGCTCGTTGATTGGGTCGGGAGACGTTTTGCCGCAATTAAGTGACACGCAAAGAGAAAACCAATTACACCGCGGACCAATTCACCGCCATGAAAGCGCACGAGCTCCCCAGATAAACGCGCGCgcgcaaagaaaaacaaaaaactgcgGGCCATCGGAAATCGACGAGCGGGTTACGCGGGTTATGTTTTAAATGGCGAATAACCGCACCTCCTTTTCCATCCACAACATATTAAACCGAGGACCGGGCTGCGAGGAGAAAAATGTCGCCGAGGAGTACGCGGAAGAGCAGGAGGCGCGGGGCCGCTCGCCGGAGAACCCCGGAGCTGAGAGCATCTCTTCCTGCGCGCTCGCGCTGGACTCCTCGTCCTCAGACCAGCATTCGTGCGAGGAAGGGTCGACCGGGGGCGAAGACAGTTCTCTAGAAAGACGGCACGACCACGACAAGGACCAGGAGAAACCGCAGAGCTGCAGCTTCGAAGACAACAACCCCAAATCGAGCAAAAAAAGGTCACGGGCAGCGTTTTCTCACGCGCAGGTGTACGAGCTGGAGCGCCGCTTCAACCTGCAGCGGTACCTGTCCGGCCCAGAGCGGGCCGACCTGGCAGGAGCTCTCAAACTGACCGAGACTCAGGTGAAGATCTGGTTCCAGAACAGGAGATATAAAACTAAACGGAGACAAATGGCGGCCGAGCTCACGACAACCCCCGCGACAACCCTGGCAAAGAGAGTGGCTGTCAAAGTACTGGTGAGAAACGACCAGAGGCAATACAACGCCGAGGAGCTGCCCAGTCCGTCCGTCCCTCCGTTATACCAGTCCTTCCCTTACTATCCTTACATGTTCTGCTTCCAGCCGTGGATCTCGGGGAACGCTTTAAGCGGTGGCCTGTATTGATTTTCCCGGAGTCGTAGCATCATGTGGAAAGTGACTGTGGAGACACAAATAAAGCCAAAACTGCTATTCCTCCGTGGATTACCAACTATAAAAACTATGACCAGAGCAAAAGAGGATTACGATATACTGATATACTGATTTTCCAAAATCAATAATGATCGTTAAGCCAAAGCAAAGACGATTCACTCAAATCGAGTTTCTATCATTTGTAGTTATATCTGTCTTTTGTTGCATAGTAATGCATTCGGACAAACAGacacatttaatgtaatgaatTATATTGCTTtagataacaaaatattaaaccaaaaagcggcatctgcaaacaaatgatgctcatctttttaactttgtttttcagttccgaaaaaaaagtcagaaaggGGCCGATAAACCTAGCAATCTTGCATTTGGGAAATGTTTCGCATTATTGTGGTTAAATGTTTCAGTTTAACAATGTAAAATTGGCAAACGCTTAACTCATTTCAAACACCGCACGGGTTgactagttaaaaaaaagataactaaTGAATATAGCCAACTGACACGATGAAACGCAACAAATGCATAatagcatatataaaaaaaaaaactgattttgcaGATAAACCTTACTCTTGTTATCTAATGCAAaggcattcatgcatttaagtGCTGCTTAAGCGTTCAAAATGTAGGTCTACTGTAAATGCTTTGATATGGAGTGTGTTTAGCTATAGTTTAAAGAGTTGTCCTGTTAACGTTTGTCACCGATTAAAGTTCTTGTTTATTTCCATCACAATGGAGAACACGCTCTATAGTGCACTAAGCCTTGTAATGTGTCAGCTGCTTTAATTCAATGCCTAAATCCAGTCGCTGCGTTGAACGGGAAAATACGGGcttcaaaaaaagaagaatcgAGCTATCATGCGTCTGGAGACAAACTAACCGCAGAAAGCAGAAAGCTTAAAGCGGGTTTGTCAACACAACGCGCAAAGATGAATGCCTTAAAGGCAGTAATTTAAGAGGAAGAACTCGTCAAAAGATTCTTTGTAAATAACGGCTTGACAGGTGACAAGACTATCGTACGGATAAAAGACAATGAAAACGGCATCGTTTAATTCAATACTATTTTAGATGAACCAACATCGAAATCTTTGATTGAAACCATTACGAATGCGCAAATATGAAAAAGTGAGCCAACCTGGCATTAGAAGTATCTAATTATCTCTAATCTGCCCCGTCTCTGACCTCGCATGCAAGACTGTGCCGTACATTTTCATGAAGAACAACAAAGTCGGTCAGACTGTTTTGAAAAGTCTGCAGTCCTGTGTTTAAAAAGGACGGTATCACTGTAAGgtcacacacatttacaaatcAAGTGTTGTTTACGTGCCAAACAGAAAGGCTTTAAAAAggctttgttattttattcaacaGCAAACGGTGCTGAACATAAACGTCCGTCTTTCTTTCTCCATATCAGATGCctgtatattaattaaacatctaaaataatcaaatgcaatacaatgcacgacttaaataaaaaactagaTAACAATTATTGGAGTTTGCTCTATAAAAAAGTccttttacttaaatatttcaCTATGTTTCATTCGCTTTGTAATTTACAAGCaattttctgagtgaaaattgttttttatgcaattttttcaCTGCCCTAGTGAAGAAAtatatgctaaaatgtatttaaaatgcatttaattttattaatttacatatatattgtacCTTTGGTATACTTAAAGTCTGCTCAATGGAAACAACTCATTTTAATACGCTTTAATTGTGCAGGAGCAGGTCCAAATAAAGGTATACTTAAG

Function

symbol description
nkx3.3 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in cell differentiation and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in heart and pharyngeal arch.

NR:

description
PREDICTED: homeobox protein zampogna-like isoform X1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254746.1 True 3401 mRNA 0.41 2 15743917 15748460

Neighbor

gene id symbol gene type direction distance location
pyroxd2 pyroxd2,LOC107747264,LOC107601051,LOC107665597,LOC107586065,LOC107702741,LOC107719216 coding downstream 33769 15701427 ~ 15710148 (-)
loxl4 loxl4,LOC107665580,LOC107601038,LOC107702733,LOC107719235,LOC107586088 coding downstream 62523 15654465 ~ 15681394 (-)
crtac1b crtac1b,crtac1,LOC107665558,LOC107702729,LOC107601025,LOC108443504 coding downstream 111347 15609866 ~ 15632570 (-)
sfrp5 sfrp5,LOC107747303,LOC107665568,LOC107728441,LOC107601040,LOC107564685 coding downstream 182360 15546586 ~ 15561557 (-)
zgc:171482 zgc:171482,LOC107747266,LOC107665614,LOC107702738,LOC107564682,LOC107728442,LOC108262817 coding downstream 236205 15443065 ~ 15507712 (-)
st3gal7 st3gal7,LOC107665608,LOC107601047,LOC107747259 coding upstream 123615 15872075 ~ 15876837 (-)
morn4 morn4,LOC107719210,LOC107702749,LOC107747296 coding upstream 141513 15889973 ~ 15893677 (-)
ipmka LOC107747295,LOC107665575,LOC107719230,LOC107586076,LOC107549139 coding upstream 531205 16279665 ~ 16289717 (-)
LOC122356736 nanp,LOC107586073,LOC107736515,LOC107665564,LOC107549144,LOC107676393,LOC107719206 coding upstream 553749 16302209 ~ 16304328 (-)
LOC122356349 rmdn2,LOC101884968,LOC107719222,LOC107549137,LOC107665553,LOC107747279,LOC107676373 coding upstream 586564 16335024 ~ 16361805 (-)
G94145 NA non-coding downstream 103284 15640275 ~ 15640633 (-)
G94132 NA non-coding downstream 138204 15604687 ~ 15605713 (-)
G94063 NA non-coding downstream 459862 15279407 ~ 15284055 (-)
G94016 NA non-coding downstream 748217 14980996 ~ 14995700 (-)
G94003 NA non-coding downstream 870903 14872432 ~ 14873014 (-)
G94199 NA non-coding upstream 14091 15762551 ~ 15762843 (-)
G94200 NA non-coding upstream 14964 15763424 ~ 15763745 (-)
G94232 NA non-coding upstream 158810 15907270 ~ 15907491 (-)
G94247 NA non-coding upstream 218554 15967014 ~ 15967343 (-)
G94298 LOC107549156,LOC107665613,LOC107747251,LOC107676394,LOC107719205 non-coding upstream 581682 16330142 ~ 16332347 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other downstream 23101 15686270 ~ 15720816 (-)
G94147 NA other downstream 101414 15642031 ~ 15642503 (-)
G94128 NA other downstream 160000 15564617 ~ 15583917 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other downstream 490560 15227332 ~ 15253357 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other downstream 644684 15024832 ~ 15099233 (-)
nkx2.3 nkx2.3,LOC107747299,LOC107665571,LOC107702735,LOC107601037,LOC107586108,LOC107719236 other upstream 4176 15752636 ~ 15755128 (-)
LOC122356531 cnnm1,LOC107702746,LOC107719212,LOC107747260,LOC107601048,LOC107665556 other upstream 26317 15774777 ~ 15793540 (-)
G94216 NA other upstream 129067 15877527 ~ 15885222 (-)
pcdh15a pcdh15a,LOC108443650,LOC107586072 other upstream 261227 16009687 ~ 16169204 (-)
cisd1 cisd1,LOC107549159,LOC107747252,LOC107665600,LOC105902329,LOC108443718 other upstream 541694 16290154 ~ 16292379 (-)

Expression


Co-expression Network