LOC122356234 (synj2bp,LOC107705435,LOC107654920,LOC107736856,LOC107553210,LOC107580248)


Basic Information

Item Value
gene id LOC122356234
gene name synj2bp,LOC107705435,LOC107654920,LOC107736856,LOC107553210,LOC107580248
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 14172637 ~ 14176874 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254764.1
GCGAGCACGTATCCCGGCAGCATTAGAAGAAGCAGGCGGAGTTCCGCACGCTTTAGGAGGGTTTTAGCTGTTCGGGAATAAAAGTGAAACTTTTCCGACATCATGAACGGATCCGCACACAACGCGCCGAGCGTTGAAGAAATAACGCTGAAAAGAGGCTCGGCTGgTCTGGGGTTTAATATAGTAGGTGGAGTGGACCAGCAATATATTATGAATGACAGTGGAATCTATGTGGCAAAAATCAAAGAAAACGGAGCAGCTGCACTGGATGGACGTCTGCGGGAGGGAGACAAAATTCTTGCGATAAATGGCCAGAAGTTGGACAATCTGTCCCACGGTTCAGCAGTGGAGCTGTTTCGGTCTGCAGGGGAAGATGTGCATCTTCGCGTACAGCAGCGACCTATCATGCAGAACGGCCCCACCAGCTCTCGTGCCGATGGAGAATCTTCATCTGCTTTCGGCACATGGACAATGTATACTGTAGCTGTCCTGGCAGTAATAACAGCAGCAGGTTTCATTGCTTACAAACGCTTTCAGTTGCACCCCCGGGGGTCCCGGGGCCCATTTTAACCCATCACATGATCACATGACATTTTATAGactaaatctcttttttttctttttgatttgaacCATTTCTGCTGAGGGCCCAAACATTAACAGGGAGCGAAAATGGAAGCCAGTTAATGTTAGCAGAATGCGCAGATTTTCTTTAATTGTTTCTACCGTGTTATGACCACACACTTGTAGCTATAACAGGTTTTCACAATTCATTTGGTGATAATCATTGGCGCTTAACCAGAATACCCAGCATGCCTAATGACATTGCATGGTGGAATAAGGGGACAGGTATGATGAGCACAGTGTTTGGATCAAGAGCTGCAGAAATCTCCATAATCTGATTTAGACAGAGGCAGGAGACAGAGGCTGAGGTGGAACTGTGTTTCCGGGCAGAAGACAGACCCACAGAGAAGTGATTTTTCTCATCTTGTACCTCTGGAGCGCTGGAATGAGCCCGAGGTGTGccattcgatttttttttttttttttttgaggtctTCTCAGGTACCTGCTTGTGCAAGAGTAAGTTTGAAAGCGTGCATGACGTGAATGGAGTAaactttttctcatttttaatgctATAATTTCTCGCTCATCCAAGTTCAGACATGCAGGATGCATTTCCGTGGCTGCAGTAGTGATGGGGGAAGTGAAGACTTGAAGAAGAATTGTTTATTTGCCATCAGGGCTTGGCCTTGTATTTGCTCTTCCTCCCTCGAGGGGGAAAAAACTAGAGGTGGCACTTGTTAGAATTcacaatcaaaatgaaaattgaataTTATTGGTATTGTATATGGCTTGGAATCGCCTCGTCTCGTACACTGAAGGGTTTATGCACCTCTTTCAACTTGTGCCTTGCCACATTGAGTTGCTGGTCTCAGTGCTGCTCCCTGTCTGCAATTTTAGGAGCGGCAGCTTTTGCTGTTTCTGTAATATCTGTTCTGAACTTGACAAATGTGTCTGTTATCATAGCGGTTCTTCTCCAGCTCTGTATGGATGAAACCTCGTGTAAAGTCTTCATGAAATGctcattcacataaaaataatgttaccGTTCACATGCATTGTGCTTCTCGGTGtttgaaatgtgtatataataaaaacgaTTCAAATGGCTCAAAAGAA

Function

symbol description
synj2bp Predicted to be involved in several processes, including establishment or maintenance of epithelial cell apical/basal polarity; receptor clustering; and receptor localization to synapse. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in several cellular components, including basolateral plasma membrane; neuromuscular junction; and postsynaptic density membrane. Orthologous to human SYNJ2BP (synaptojanin 2 binding protein).

NR:

description
PREDICTED: synaptojanin-2-binding protein-like

GO: NA

KEGG:

id description
K20057 SYNJ2BP, OMP25; synaptojanin-2-binding protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254764.1 True 1686 mRNA 0.44 4 14172637 14176874

Neighbor

gene id symbol gene type direction distance location
LOC122356233 LOC107705434,LOC794838,LOC107553207,LOC107683381,LOC107654921,LOC107602927 coding downstream 782 14164734 ~ 14171855 (-)
pacs2 pacs2,LOC107654955,LOC107681285 coding downstream 13471 14129394 ~ 14159166 (-)
dcaf5 dcaf5,LOC107705431,LOC107654956,LOC107681972,LOC107553205,LOC107739884,LOC102780996 coding downstream 45552 14113386 ~ 14127085 (-)
actn1 actn1,LOC107705429,LOC107602958,LOC107654957,LOC107739883,LOC107680897,LOC103359947,LOC108440922 coding downstream 64296 14083483 ~ 14108341 (-)
slc8a3 slc8a3,LOC107654959,LOC107705428,LOC107602954,LOC107739881 coding downstream 102493 14031356 ~ 14070144 (-)
lgals3a lgals3a,LOC107736502,LOC107683071,LOC107705436,LOC107602963,LOC107553209,LOC107654953 coding upstream 1276 14178150 ~ 14184493 (-)
cdkn3 cdkn3 coding upstream 15640 14192514 ~ 14200779 (-)
sos2 LOC107654947,LOC107602966,LOC107736529,LOC107683816,LOC107553213 coding upstream 32501 14209375 ~ 14224126 (-)
l2hgdh l2hgdh,LOC107682613,LOC107736610,LOC107705441,LOC107654945 coding upstream 50324 14227198 ~ 14232322 (-)
cdkl1 cdkl1,LOC107705442,LOC107736652,LOC107553215,LOC107602970,LOC107683176,LOC105890986 coding upstream 59226 14236100 ~ 14243270 (-)
G93879 NA non-coding downstream 242343 13761046 ~ 13930294 (-)
G93855 NA non-coding downstream 484011 13685947 ~ 13688626 (-)
G93591 LOC107705361,LOC107654976,LOC107602941 non-coding downstream 506377 13665809 ~ 13666260 (-)
G93588 LOC107654976,LOC107553194,LOC107602941 non-coding downstream 508726 13661750 ~ 13663911 (-)
G93583 NA non-coding downstream 517288 13654379 ~ 13655349 (-)
G93905 NA non-coding upstream 10665 14187539 ~ 14189904 (-)
G94003 NA non-coding upstream 695558 14872432 ~ 14873014 (-)
G94016 NA non-coding upstream 804122 14980996 ~ 14995700 (-)
G94063 NA non-coding upstream 1102533 15279407 ~ 15284055 (-)
G94132 NA non-coding upstream 1427813 15604687 ~ 15605713 (-)
srsf5a srsf5,srsf5a,LOC107683426,LOC107602962,LOC107654954,LOC108411053 other downstream 8223 14160323 ~ 14164414 (-)
LOC122356235 LOC107705430,LOC107683441,LOC107553204,LOC107602960,LOC107654922 other downstream 89847 14079532 ~ 14082790 (-)
G93875 LOC107680680,LOC107739875,LOC107576479,LOC107553198,LOC107705377,LOC107654967 other downstream 260800 13910339 ~ 13911837 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other downstream 267935 13898258 ~ 13904702 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other downstream 454323 13693026 ~ 13718314 (-)
lmbrd1 lmbrd1,LOC107747273,LOC107736841,LOC107664263 other upstream 847958 15024832 ~ 15099233 (-)
col9a1b col9a1b,LOC107736853,LOC107664283,LOC107747286,LOC107665560,LOC107747272,LOC107736861,LOC108429279,LOC107564679 other upstream 1050458 15227332 ~ 15253357 (-)
G94128 NA other upstream 1387743 15564617 ~ 15583917 (-)
G94147 NA other upstream 1465157 15642031 ~ 15642503 (-)
zgc:123010 LOC107601052,LOC107747265,LOC107719217,LOC107665557,LOC107702739 other upstream 1509396 15686270 ~ 15720816 (-)

Expression


Co-expression Network