LOC122356236 (apmap,LOC107702698,LOC107564208,LOC107717839,LOC107559784)


Basic Information

Item Value
gene id LOC122356236
gene name apmap,LOC107702698,LOC107564208,LOC107717839,LOC107559784
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2852563 ~ 2860667 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254766.1
TTTCcttaaatgtttgtgtttacttgtttgtttaCCAGCCccgaattaattaattaacaaaatgtctGTACGTGACTTTAAATTTGAAAAGCGGCCCGAGTGTCCCTCTCAACGGTTCTTGACGTTTCTCGGCTCACACGTCACTGCCGTCGCTCGAGACTCGCGCACGTTATGAACTGCGCTGGATTTGGGATGTAAGGTTAGCGAATAGATGCGTCGTTCGTCGGACCAGCTTTTATTCTGCTCGAAGCCTTGCTGAACGTAGCTGCGAACgcggaggaagagagaaagacgaCGCGACAGCAGCAGGATGAATGAGTCCGAGGGACTGCGGTTCAGGAGGTTGAACAGACCTCAGATAATTACAGACGAAACCCATGAACCACAGTACAAAACCACGAGcacTTACAGCGGGAAGGTGTTTCGTGTGACCTTACTGACGCTGGTGGCTTTCCTGTTCTTCCCGCTGCTGGTGGTGGTCTTCCTGTTGGAGTCCCCCATCCAGCCGGAGGTGTTCAGTCTCGGCGAGCCGCCTCTGATGACCGGCTGTTACGAGCCCAACCTAAAGCTCAGGCAGGCAGAGCGGCTGTTTGAGGAGCGTCTTGTCGGCCCAGAGTCCCTCGCTAACATCGGAGATGTTTTGTACACTGGGACCGCTGACGGAAAGATTGTCAAAATCGAGGGACGGAGCATTCATGTGTTAACAACACTTGGCAGGCCACCGTGTGGCTCTCGAGAGTATGAACACACTTGTGGACGTCCCCTGGGAATCCGCGTGGGGCCCAACGGCACCTTGTTTGTATCCGATGCCTATTTGGGACTGTTTGAGGTCAATCCTGTCACAGGTGAGGTTAAGTCTCTGGTGAGCACAGGGAAGATGGTTGGAGGTCGCCGCCTGGGCTTTGTCAATGATCTGGATGTAACTCAGGATGGGAAGAAGCTGTACTTCACCGACTCCAGCAGCAGATGGCAGCGCAGGGACTTCATGCACCTGATCATGGAAGCCACGGCAGATGGACGCGTTCTTGAGTATGACATGGAGACTAAGGAGGTGACTGTAATGATGGAGAACCTGAGGTTTCCCAACGGCATCCAGCTCTTCCCTGATGAGGAGTCTGTTCTGGTGGCCGAAACCACAATGGCCAGAATAAGGAGAGTTCATGTGTCTGGTCTCAATAAAGGAGGTATGGATACATTTATAGACAACCTCCCTGGCTTTCCTGACAACATTCGGCGCAGTTCTTCAGGTGGATACTGGGTTGCCATGTCAGCGGTGCGACCTAACCCTGGCTTCTCCATGCTTGACTTCCTGTCTCAGAGACCCTGGTTAAAGAAGCTCATATTTAAGCTCTTCAGTCAGGACACCCTGTTGAAGTTCGTGCCGCGCTACAGTCTGGTGGTGGAGCTGCAGGACGGAGGGACGTGCGTGCGCAGCTTCCACGACCCGCACGGCATGGTGGCGGCCTACGTCAGCGAGGCGCACGAGTACGACGGCCACCTGTACCTGGGCTCCTTCCGCTCGCCGTATCTGTGCAAGCTGGATCTGAGCAAAGTGTGAAGCGCGCCACGAGCCCGACAGATGCTCTGCTCGAGTCATTTCACCCTGGTTTCCAAACTAACAGATTTCCAAGCAATTAACGTTGGCAAACATCAACAAGAACACTTATTAGCATCTTCCATATTATAGTCAACACTGAACAAACGGAGCCCCTTCATTCGATGACCCTTTTCTTCATTTAGCTCTGGCAGACGCCTCTATTTTTGTTCCATTAACCCATGTGggtaactttctttttttagagaTGCGTGGTGCATAATAAGCTCTCTGGCAGGCTGTTTCTTATATCAAAAGATGTGCCATTACTATTTTCGTTTCTCCCCCTTGTGACAGAGATTATGCAGTTTCTgtacttgttttatttgcacCAAATGTCGTCTGGCTCTTAAAATAGAGCTGccgaaggtttttttttttttttttttttttaaggcgcTGTGATACGAAACAAGACGACTGGTAAAAACTCTAATAATTCCTGTGGGTGGATGCATAGAGATGCTGTTCGGGGGAAGCGAAAGGGTATCTTCATTTCACTATAAAAGAATCTCCACACAACTATAATTAACTCCGGctttaaaaacatctgaatgttttggtttattttttaattgagtgGTTGTTCTTACGTGTCATCATTATTTGTATATGTTGCTGAAATGAGATAAATGCTGCTGGCTTTATAGTATTTACCGCACCTTTACACACATGTGTTTTCCTTTCCTAATTTTATGATGTCTGTAAGAATGATCAGCAATAATGTCATATACGGCAACGGTGGTTCTCAGTCGGTGGATTGTGGCCACAGTGAGTGGGAAAAAACTGTGctaaatggaaataataaataaaattaatcagtTATTCTTGCTTAGGGAAGCAAAATAAATGGGATTCAAGCAATA

Function

symbol description
apmap Predicted to enable strictosidine synthase activity. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in pronephric duct. Orthologous to human APMAP (adipocyte plasma membrane associated protein).

NR:

description
PREDICTED: adipocyte plasma membrane-associated protein

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0016844 strictosidine synthase activity molecular_function

KEGG:

id description
K21407 APMAP; adipocyte plasma membrane-associated protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254766.1 True 2460 mRNA 0.48 9 2852563 2860667

Neighbor

gene id symbol gene type direction distance location
ppm1g ppm1g,LOC107660231,LOC107717838,LOC107754752,LOC107702697 coding upstream 6303 2839850 ~ 2846260 (+)
LOC122356205 LOC107719934,LOC107699158,LOC107597732 coding upstream 350242 2500682 ~ 2502321 (+)
polh polh coding upstream 364428 2482202 ~ 2488135 (+)
tmem14a zgc:163080,LOC107751370,LOC107701972,LOC107579763,LOC107597714 coding upstream 373714 2477593 ~ 2478849 (+)
LOC122356456 LOC107710218 coding upstream 402150 2446050 ~ 2450413 (+)
LOC122357122 cul9,LOC107655624,LOC107669557 coding downstream 56225 2916892 ~ 2951762 (+)
LOC122356776 LOC107564218,LOC107739478,LOC107706823 coding downstream 96991 2957658 ~ 2971147 (+)
LOC122356304 LOC107739478,LOC107564218,LOC107728064,LOC107655626,LOC107559768 coding downstream 110479 2971146 ~ 2979249 (+)
LOC122356067 ppp2r5d,LOC107559765,LOC107696374,LOC106605890 coding downstream 161949 3022616 ~ 3050667 (+)
LOC122356783 LOC107655626,LOC107728064,LOC107564218,LOC107739478,LOC107706823 coding downstream 349125 3209792 ~ 3227749 (+)
G90292 NA non-coding upstream 222956 2629192 ~ 2629607 (+)
G90290 NA non-coding upstream 227280 2624938 ~ 2625283 (+)
G90232 NA non-coding upstream 370788 2481369 ~ 2481775 (+)
G90220 NA non-coding upstream 415054 2437106 ~ 2437509 (+)
G90214 NA non-coding upstream 529599 2322609 ~ 2322964 (+)
LOC122356240 NA non-coding downstream 5140 2865807 ~ 2881686 (+)
G90339 NA non-coding downstream 156127 3016794 ~ 3017220 (+)
LOC122356074 NA non-coding downstream 159401 3020068 ~ 3020891 (+)
G90326 cul9,LOC107736443,LOC107564217,LOC107669557,LOC107683065 non-coding downstream 339180 3199847 ~ 3201487 (+)
LOC122356226 NA non-coding downstream 385596 3246263 ~ 3247132 (+)
G90230 NA other upstream 382182 2469945 ~ 2470381 (+)
LOC122356772 pim3,LOC107732271 other upstream 567756 2264746 ~ 2284807 (+)
cutc cutc other upstream 671734 2176009 ~ 2180829 (+)
tp53bp2a tp53bp2,LOC107582030,LOC107705014,LOC107558217,LOC107742808 other upstream 686535 2153422 ~ 2166028 (+)
lgi1a lgi1a,lgi3,LOC107565913,LOC107701579,LOC107753733,LOC108260544 other upstream 855253 1989872 ~ 1997310 (+)
LOC122356072 znf318,LOC107739464,LOC107564219,LOC107728066 other downstream 121892 2982559 ~ 3010641 (+)
LOC122356070 dnph1 other downstream 191315 3051982 ~ 3278260 (+)
G90350 dlk2,LOC107696386,LOC107669558,LOC107559779,LOC107728069 other downstream 314068 3174735 ~ 3285406 (+)
G90349 NA other downstream 318760 3179427 ~ 3179933 (+)
G90324 cul9,LOC107564217,LOC107669557,LOC107559769,LOC107655624,LOC107706827 other downstream 327159 3187826 ~ 3192113 (+)

Expression


Co-expression Network