lrit1a (lrit1a,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643,LOC108442250)


Basic Information

Item Value
gene id lrit1a
gene name lrit1a,LOC107585312,LOC107673966,LOC107716298,LOC107707479,LOC107588643,LOC108442250
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 10659603 ~ 10663760 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254811.1
ATAGCTGTGCACAAAGTTGGATGTCCTTAGTCTGGCAACTCTCATGCTAATTATTACAAGGAAGGATCGATACATTTTATAGCAGGCAAACATGGAAATATCATTTGCAACATAgaaataaatcttaatataaaaaaatctatttatttttattttgaaagatgtAGAAACAATCTTTTTCAACACTCCCTGCTCTGCCCTATAGTGACTGGTACAGCCAGAACAGAGCAGCTGCCAAAAGTACCATCAGCTTACACAGTCCAGAAGTGATGCAACACATTTTCTAGTCCGGCTGCCAGGTAGAGGATGGTTTGAAAGAGAGCTGGATGGGGGATGGGCATTCAACATTATGGCCAATTCAGAAATATTTCCTCCCTATAATTAACAGCTGCATCTCTCCGTAGCCTATCAGCGTCCACATCTAAATGAAAAGAACGCGCGTGATTTCGCTAATCCTCATCTGTCCTTTTTATCTGCCGGACTCGCAGCAGTCACATCATTATGGGACATCGAAGCAGAGCGACGATGACATGCTGGTTATTTTTCCCATAATTGCAAGtggatgtttttttcattaaaactacGTTCGGCGGTGTTTTGTTGACACGAGTAGCGAAATGTCTCTTACTGTCTTTTTGGGTCTCCTACTGGCATCTGCTGGCTTTCCACTTGCTCGGAGCACCTGTCCTTCCCAGTGCAGCTGCTTTTATCATAACCTGAGCGATGGATCAAGAGCCAGGAGCGTGATTTGCAACGATCCCGAGATTTCCCTGGTCCCCGCCACTTTCCCAGGCGACACCTCGAAACTTCGGATCGAAAAGACCGCAATCAAGAGGATCCCGAGCGAGGCTTTCAGCTACCTCTCTAACTTAGAATTCCTTTGGATGTCATTTAACGTCTTGTCCTCTCTCAACCCGGACAGTTTTCGCGGGTTGTACAGTTTAGAGGAACTAAGGCTCGATGGAAATTCGCTCTCTGCGTTTCCGTGGGAATCCCTTATGGACATGCCCAGTCTGAGGCTACTCGATATACACAACAATCAGCTGTCCTCGGTACCATCTGAGGCTGCTCCCTACATGAAAAATTTAACCTACCTGGATTTATCCAGCAATAATCTGCTGACAGTGCCATCTGAGGTCCTCAATACTTGGCTGACAGTCAAACCCATCCAGGGAGCAGAAAGTTCAAAAATGATTCTTGGTCTTCATGACAACCCGTGGTTGTGTGATTGTCGGTTATACGACCTGGTCCAGTTCCAAAAGTCTCCCAGCCTGTCAGTGGCTTTCATTGACACAAGGCTCAGGTGTGCGGATCCAGAGAGCCTCTCCGGAGTTCTGTTTAGCGATGCTGAGCTTCGGCGCTGCCAGGGGCCTCGTGTCCACACGGCCGTAGCCCGGGTGAGGAGCGCAGTGGGCAACAATGTCTTGCTGCGATGTGGAACAATTGGAGTTCCCATTCCTGAGCTGGCTTGGAGAAGGGCAGATGGGAAGCCACTTAACGGGACAGCTCAGCTGGAGAATTCGAAGGAGGGAATCGTTTGGTCTATTTTAAGCGTGCCTGCAGTGTCCTATCGTGACACGGGGAAATACATCTGCAAAGCAACAAATTACGCAGGGAGTGCAGAAGCCGTCATTTCTTTGATCATAAGCGACGCCCCCAAAGCTGAGAATCCGACTGTGGACCCAAAAACCAAAGCGAAGTCCAAGAAGCCCAACCCTATAGTCAAAGCAGCCTATCAAGAAAAACACATCGCCACGTATGTTTCCCCAACTCCCAAAAATCCGCTAGCTCTTGGTGCCACCGTGAGCTACACAGGCCCATATCCAGGTATGGAGAGCGACAATGCCGCTAACAGTCGGACGAACACCCAAACAGCCAGTCCCGATGGGTTCCTAGAGACCAATCTGAGCAACCTGGCCGCGAACACATCCTCGCTGCAGCAAGACCCCGACAGGGTTGTGCGCTCTGTGAAAGTGATTGGCGACACAGACTACACTGTGTGTCTGAACTGGAGGGCACCCACTGCCAAGAACACGACCGCTTTCAGCGTCCTCTATGCTGTGTTTGGCGAGAGGGATATGCGCAGAATTAACGTCAGTCCTGGCAACAACCGGATCATCATCGAGGGACTGGTTCCAAAAACCAAATACATCGCCTGCGTGTGCGTCAAGGGGCTGATCCCCAAAAAGGAGCAGTGTGTAATCTTCTCAACAGATGCAGCAGCTAGCGCTAATGGAACCCAAAAGCTCATTAATGTAGTAGTAATCACGGTTGCCTGCGTGATAGCCGTGCCTCTGACTGTGATTGTGTGCTGCGGGGCACTTAAGAGGAAAATTAAGAAGTTTCTAGGCAAAAAGTCCAAAGACATTCAGGACTCTTATGTTACATTTGAGACTCTGTCTCCCAGCACCAAGGCCAAAGGCTTGGAAGGGGAATATCTCAACAGACTGAATGCAGAGGAGTCCAACAGATTACTGTCAGCCAGGTCCAGCCTAGACTCAGAGTCCACGGCTAAGATTGAGGGACAGCCCAACGAGTATTTCTGCTGACAATATCCCTCAGCCACAATTCCACCACGCAGCCATCACAGTATCCAGGCCCAGCCGCAGTACCTGAGTGCACATAATCTGTACCAGCAGTACATGACTGGCCATCCGTGAAGAAGCTTCGGGATACTTTGCATAAGCAACAAAGTGCACAAGAGAAGACTTTTATGTTGCTGTGCTTTTGGACTTGGTTCTAAACTAAGCCTTTGGCTGTTGGTGGGGTTGTGGCTGAGCAAGCCCCAGAACTTGTAGATATGGACTTTAACCCCTTCAGACTTTGTTAGGAGGAACTGATTCAAAGGGAAATGTTCATActatttcttgtttatttgtattatatgtgggaaaaataatctgttaatatgtaataatactATTGAATACTATTGTTATGTAAAATATTGGGGATTCATTTTCACAGTATACTCTTAATGAGTCTAGTGTATCAGTTTTGATTTTCGTTGGTGTGGACGCTTTTCGCTTAAAAATTGGAAGTAACTTTCTGAAACAGCAAGTAACACTTTGAATTGAACATTAAGTTTTCATTTCCTCATAAGCCACACTCCGATAATCTTTAtatgtaactttaaaaaaacattttttacattgtatctACCAACATTGTCATCATTGTGTATGTAACGTTAGTCTATCTCTGTTTGTTTACCATGTAAAACCTGTGCCACCTGAACCATTCAGAACTGTCCCGGGTTGCCTAGTACCCA

Function

symbol description
lrit1a Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of endoplasmic reticulum membrane. Orthologous to human LRIT1 (leucine rich repeat, Ig-like and transmembrane domains 1).

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 1

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K24491 LRIT; leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254811.1 True 3271 mRNA 0.46 4 10659603 10663760

Neighbor

gene id symbol gene type direction distance location
ogdhl ogdhl,LOC107683740,LOC107707496,LOC108442924,LOC108263326 coding upstream 26360 10613939 ~ 10633243 (+)
parga parg,LOC107716337,LOC107673942,LOC107585315,LOC107708050,LOC107683745 coding upstream 48112 10584381 ~ 10611491 (+)
myofl LOC107707528,LOC107588650,LOC107673938,LOC107688302,LOC107716336 coding upstream 75782 10560676 ~ 10583821 (+)
unc5b unc5b,LOC107588651,LOC107707543,LOC107688303,LOC107585316,LOC107673953 coding upstream 101721 10509514 ~ 10557882 (+)
LOC122357093 LOC107688300,LOC107673862,LOC107588652 coding upstream 244367 10389085 ~ 10415236 (+)
lrit2 lrit2,LOC107707486 coding downstream 211 10663971 ~ 10668889 (+)
chst3a chst3a,LOC107708342,LOC107588701,LOC107673894,LOC107683746,LOC107585362,LOC107716304 coding downstream 17988 10681748 ~ 10689438 (+)
pax2a pax2a,pax2,LOC101463634,LOC107707401,LOC107668824,LOC107588637,LOC107716343,LOC107585307 coding downstream 132322 10796082 ~ 10828360 (+)
cuedc2 cuedc2,LOC107585308,LOC107716345,LOC107673918,LOC107588639,LOC107707447 coding downstream 218159 10881919 ~ 10885510 (+)
dnajb12a dnajb12a,LOC107716349,LOC107668821,LOC107707369,LOC107673930,LOC107585300,LOC107588700,LOC108443064 coding downstream 251884 10915644 ~ 10919671 (+)
G92671 slc18a3,slc18a3a,LOC107708354,LOC107683739,LOC107716340,LOC108442244 non-coding upstream 14366 10642556 ~ 10645237 (+)
G92563 NA non-coding upstream 349827 10309237 ~ 10309776 (+)
G92552 NA non-coding upstream 383425 10275584 ~ 10276178 (+)
G92524 NA non-coding upstream 493947 10164559 ~ 10165656 (+)
G92513 NA non-coding upstream 588820 10068488 ~ 10070783 (+)
LOC122357062 NA non-coding downstream 89473 10753233 ~ 10763691 (+)
G92729 LOC107716350,LOC107673932,LOC107707381,LOC107588636,LOC107585302 non-coding downstream 157182 10820942 ~ 10947919 (+)
G92731 NA non-coding downstream 295660 10959420 ~ 10961696 (+)
G92746 NA non-coding downstream 319180 10982940 ~ 10983279 (+)
G92748 NA non-coding downstream 320478 10984238 ~ 10984645 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other upstream 239177 10416240 ~ 10420426 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other upstream 409878 10205113 ~ 10249725 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other upstream 1224998 9430178 ~ 9434605 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 1495489 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 1570482 9080848 ~ 9089121 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 301095 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 549766 11213526 ~ 11218175 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other downstream 591834 11255594 ~ 11262620 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other downstream 725625 11389385 ~ 11413515 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other downstream 907900 11571660 ~ 11592600 (+)

Expression


Co-expression Network