lrit3b (lrit3b,LOC107556923,LOC107666384)


Basic Information

Item Value
gene id lrit3b
gene name lrit3b,LOC107556923,LOC107666384
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5930197 ~ 5935584 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254815.1
GCAAATGCtactataattaaatatataattattaattaatacagtTCCAAACAAAGTATTAGATTTGCAAACTTGCTTTATGGAGTACGCAATTCCTTTGAAAGTTTGCTAAATCCAGTTTGCTACTGTCTCTGCGAGTTGTATAGGTATCAGCCATCCTGTTCTAGACACAcatattctttacatttaattaaattaatattccaCTATACCTCTGTTATTGTAATGCATCAGTAACGGGGCATGTGTCTCTTTACTACACTGACTAGGTGCTGATCTGCTCCTCACCACAGTAATCTCAACTAATCCTTTTAGTGTTCGTCTTAATCTACGGCAGTGTTTGGAAATGTCACAGTCCTGCTCAGGCAGAGAGTGGTACTTCTTTCGAGGGACAGTGGTGTGTGAGATGCTTTATGTGTCTGTGAAGCGATGCATCCACTTCTGTATGCAGACCTCTCTTTGTGTTTGGCTTTGGTGGTCTGTGCACAGAGTCCATCGTGTCCATCTCTGTGCACCTGTGTGCTCCATGATCGCAGCAATGCCAAGGGACTCAGAACGGTGCTCTGTAAAAACCCAGCCTTGACCGCCATTCCAGTAGATCTACCAAGTGATGCAGTCAAGTTTCGTCTGGAGCGCACCTCTGTTTCCAGGATCTTCAGAGGTGCTTTCTCTGGCATGCCAGAACTGCTTTATTTGTGGCTTACATATAACTCCATCACTGTTCTGCATCCAAGGAGTTTCACAAACCTGTCTTTCCTTCATGAGTTACGATTGGACGGGAACCTCCTGTCCTCCTTCCCCTGGGAGGGACTCAGGGATGTGCCCCGCCTCCGGACACTTGGATTGCACAATAACCGCCTGGCACGAATCCCACCCCTGGCTGCACGTTACCTTATCAATGTGACTTACCTGGACCTCTCCAGCAACAGGCTGAGCACCCTGCCCAATGATCTGACTGCTCTCTGGCCGCTCAGTGACAGCTCGCAGACGCAGGGCTCAGTGGTTTTAGGTCTTCAGGACAACCCCTGGGTGTGTGACTGTAGACTTTCCACTTTGCTTGACATTAGTAAAGCCCCAGAAACTTCTCTGGTCCTGTTGGATCGATTCCTGACCTGTAGTGAACCGCCAGATCTCGCCGGAGTTCCCTTTCAGAGCGTGGAACTCACCCGCTGCCGCAGGCCCTACGTGGTGACCTCTGCCACCAAGATCACAGCTCTACTGGGCAGCAATGTCTTACTTCGCTGTAAAGCCACAGGACACCCAACCCCAACACTTATGTGGATCAAGTCTGCCATACCCAACCTTTATAAACAAGGTTGTTGTAAGCAGATGCAAAGCAGCATGGACACTGAAAGATTGCCAAGAAAACTTTCTGGATATGTACAAGAGTCTCCACGTGTGGGAATCCGCTGGTCAGCAGTCAGTCTGAATGGAATATCGTATAGCGACGCAGGGGAGTACCGCTGCAGAGCACAAAACATGGCCGGGATATCAGAGGCCATTGTCAGTCTGAATGTGGTCGGGGTAATGGCTGAATATGCAGACTCCAAAAACTCTGACCAACAGCAAACAGCTGCAAAATCAAACAATACAAAGCGGAAACCCAACCAGAAGTCTAAGGTGATGCCTTCTTTGTTACCTCGAAACATGACTAGGCCGCTCTCGCCTCCAAAGAGAGTCATGAAAATCCCCAAAACCAGCAGagacaaaatgaaaagagaCCGGACAGCCGTACAGAAGCTGCCGCAGAGACGCTTTTTGATCGCTTCTGAAAATCCACTGCCAAGAAGACAAAAACCTCATGTGTCCATGTCGGTTCACACCTGacatattcaaattaaatatgtataatttcaGGAAGTTacttttttcttataaatgaCCGTAACCTTGAGTATATTTCCTCGGCTAagaggttattttttttattatttactcagCTATGTCCACTGGATGGCAGCTCTGAGCTAAGGACGCTTCACCACTAAAGGAGCAAGTGAACTGAAATTGTACTTTTGAAAAGTGTCCAAATTGATGTTCCCTCACATGAACCGCTAGTCATATCAGTAGTCTCATAAAAGTCACATACAAGGCTTATAGATGACCTATTATCATCCATCCATATACCGACTGACAAAGGCTACATCAAGTATTAAAGAAAACGAATGCTTTATAAAAAGTACCTCTTTTGTAATGTGTGGCTGACCATTTATTCCTGATAGATCCAAGTGAACAGCAGCTGTTGAATAATTCAATTGaagtttatttatacagtgcttttttataatacaaatcattgcaaagcagctttacaggaaattaagtaaattaataaattgcagaaacataatacattttaatagcaCACTGAATGTCACAGTAAAGGCCAAAAAAGGGACAAGATGATCATTTTGCTGaccttatttcttatttctgctAGGGCGTTAATAGTGAGTCAAAGAGAGTGATGAAATTCAGCGAGCGATTATTCATCTTGACAGCATGTAACAGCTTCTCATCTCTCTTTTATCATATTCCAAGATAACACATTTACAGTGCCATTGTTAACACTccttattattttgcatttaccAGAAATATTACGCACAAACTGATGATAACAAATGATTTATGATTATGATAACTAATATGTTGATGATAACTGATTTAACCAAGTCTTTCATATCTACCTTGCAGAactcttataaaaaaaatcctgattTCTCCCTAAAATATTCCACCGTCATGATGAGAAAGTCTGCAGGGTGGAGTGATCAGCCCCAAAACACTAAGCGTAATTGCAATACTCAGTTTTTGTTATGGGTTTTTAAACTCATACCTGATAGTCATCACACTAAACGACAACATCTAGCTCAAATGACCAAAAATAATTGTCCAAATTTATACTTACACTGAAGTGGATTCA

Function

symbol description
lrit3b Human ortholog(s) of this gene implicated in congenital stationary night blindness 1F. Orthologous to human LRIT3 (leucine rich repeat, Ig-like and transmembrane domains 3).

NR:

description
PREDICTED: leucine-rich repeat, immunoglobulin-like domain and transmembrane domain-containing protein 3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254815.1 True 2926 mRNA 0.42 5 5930197 5935584

Neighbor

gene id symbol gene type direction distance location
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding upstream 122321 5795240 ~ 5807876 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding upstream 189307 5708521 ~ 5740890 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding upstream 355764 5567502 ~ 5574433 (+)
gfra4a gfra4a,gfra4,LOC107693311,LOC107747595,LOC107695017,LOC107568637,LOC107733662 coding upstream 498849 5344526 ~ 5431348 (+)
cdc25b LOC107690144,LOC107733779,LOC107582534,LOC107567856,LOC107718443,LOC107678573 coding upstream 670988 5252901 ~ 5259209 (+)
LOC122357047 enpep,LOC107747565,LOC107666571,LOC107585235,LOC107667073,LOC107733706 coding downstream 817 5936401 ~ 5946902 (+)
pprc1 pprc1,LOC107666421,LOC107747555,LOC107569410,LOC107667059,LOC107733763,LOC107585240 coding downstream 142633 6078217 ~ 6087501 (+)
oga mgea5,LOC107666422,LOC107585241,LOC107667060 coding downstream 153368 6088952 ~ 6101193 (+)
npm3 npm3,LOC107666424,LOC107569414,LOC107747554,LOC107667062,LOC107585242,LOC107733732 coding downstream 166047 6101631 ~ 6103986 (+)
arl3a arl3,zgc:110197,LOC108263849,LOC103033567,LOC107733731,LOC107747553,LOC107667061,LOC103145158 coding downstream 168542 6104126 ~ 6107776 (+)
G91180 NA non-coding upstream 2064 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 3449 5926358 ~ 5926748 (+)
G91178 NA non-coding upstream 3872 5924540 ~ 5926325 (+)
G91174 LOC107666555,LOC107747569,LOC107556920,LOC107733787,LOC107585221,LOC107695029 non-coding upstream 53458 5873007 ~ 5876739 (+)
G91127 NA non-coding upstream 160679 5769290 ~ 5769518 (+)
G91172 NA non-coding downstream 19307 5954891 ~ 5956598 (+)
G91250 gabrb1,LOC106937613 non-coding downstream 62858 5998442 ~ 6002062 (+)
G91324 NA non-coding downstream 434626 6370210 ~ 6370528 (+)
G91343 NA non-coding downstream 517160 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 758078 6693662 ~ 6699169 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 658950 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 731793 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 932206 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 1234355 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 1576266 4182499 ~ 4353931 (+)
lamtor3 lamtor3 other downstream 15633 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 46934 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 319019 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1157560 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1835976 7771560 ~ 7787307 (+)

Expression


Co-expression Network