pgbd5 (pgbd5,LOC107725485,LOC107552948,LOC107743535)


Basic Information

Item Value
gene id pgbd5
gene name pgbd5,LOC107725485,LOC107552948,LOC107743535
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8791156 ~ 8807527 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254821.1
ACCGTTATTGAAGAAGTCCCTGATTTTAGAGCAGTCTGGGAAAGAAATCAACCAAATGTGTATGATAATATTCAGAGGTAACCCTTTATAACCATTAACATTTTCACAAGTAGCCTAGTGTTTTCTCAACAACTGTAacacattttgtaattaaattacgtAATTCCGTTACATGTAACTAGTAACTCCCCAACACTGCCCACGCTGTGGCAGAGCAAATATAATTCGTGTCTCTAACATCCACGATTCGCTCAGAGGTTAATCCCATTGGACAGCGCAGGGAGAGCGAGTCAGGTGATTTCCGAGGAAGCCATTCATTCAGTCATCCTCCACAGAGAGGGGAGCCCGCCCAACCCGGATGCACAGAGCGTCTGCGGGGCGGTCAGCTGTGGGGTTCAGCCGGGTTTAGCTCGCACGATTGGGGGTGTTTCAGCACCAGAAAGGACGGACAGCTCCCGCGGCGTTCAGCCTTTTCTTCCACGCCGCTCCCGAGACCCGCGCCCGCCGCATCTCGCGCGGAGGACCGCGACGCGGAGGGGCTCGCTGGGGCAGACTGCATGCCGGATTCGACGCTTCCGAGGAGGTCATTTGCGCGCGGAATCTCGCCGGGTGCAGCAGCTCTACTTCGGGTCTGAGAAACGATGGCGGAGTGTGGAAGGAGGGGACTGTCGCTCCTCGAGGAAGCGCGGTCTCGCTACGAGAGCCTGCAGATCTCCGACGACGTGTTCGGGGAGTCGGGAGACGACAGCAGCGAAAACCCCTTTTACAGCACGACGGGGGACTCCAATTCGGATAACTACACGGAGACGAACCCGGACGATGCCAGAGCGGGCGATGCGAGGAGACAGAGCTGCGGTCCCCCCGGATCCGTCTCCAACGGCCAGGCGCAAGAGGAGGGCTGGAGCGACTCGCTACAGGACCTCAGCGTGCCTCACTACCAGGACACGCATGGTCCGACACAGAAAATGCCAGCCACTACCACGGCCATGGACTTCTTCCAGCTGTTTGTCCCTGACAACGTCATTCAGAACATGGTGACCCAGACCAACATGTATGCCAAGAAGTACCAGGAGCGCTTTGGCAGCGATGAAGGCTGGACCAATGTGACGCTGGTTGAGATGAAGGCCTTTCTGGGCTACGTTACTTCTACAGGCGTGAACCGTTGCGAGTCAGTGCTGAGCATCTGGAGCAGCGGATTCTTCAGTAATCGAAGCATCGCGCTCAAGATGAGCCAGGCACGGTTCGAGAAGATCCTCAAGTACTTCCACGTCGTAGCCTTCCGCTCCAGCCAAGGTGGCAGTCAGGGTCTCTATAAGATCCAACCGTTCCTGGACTCTCTCCAGCAGAGCTTCGCTTCGTCCTTTAGACCCTCACAGACACAGGTCCTCCACGAGCCCTTGATTGATGAGGACCCCGTGTTCATTACCACATGTACAGAGAGGGAGCTGCgcaagaggaagaagagaaagtTCAGCCTGTGGGTTCGACagtgcagctccactggtttcATCTGTCAGATCTATGTCCATCTAAAGGAGGGTCCGGGTCCAGATGGTTTGGACACGCTGAAAAATAAACCCCAGCTTCACAGTCTGGTGGCCAAGCAGCTCTGTCAGAATCTGGCTGGCCGTAATGCAATCATCTTCACTGGCCCAAGCATCACAAGTCTAAACTTGTTTCAGGAATTTGAGAAACAGGGCATCTACTGCTGCGGGTTGCTGAGCACTAGGAAGAGTGATTGTACAGGTCTTCCTCAGTCTATGCTGATCAATACGGAGGCTCCACAGCAACGTGGCCAGTCTCACATTAAGATGAGAGGCAATATGTCCATAATCAACTGGTACAACAAAGGCAACTTCAGGTTCCTCACTAACGCCTACTCTCCCACTAAAGAagGGGTGATCATTAAGAGGAAGAGTGGAGAAATCCCATGCCCCCTTGCTGTGGAGGCCTTCGCTGCACACCTGAGTTACATCTGCAAATATGACGACAAGTACAGCAAGTACTTCATTTTCCACAAGCCTAATAAGACCTggcagcaggtattttggctgACCATCAGCATCGCTATCAACAATGCCTATATTCTttacaagatgtcagacgcctACCACGTCAAACGCTACAGCCGGGCGCAGTTCGGCGAGAGGCTGGTCAAGGAGCTCCTGGATATGGACGACTGCTCACCCACTCAGTGAAGGAAACCGCATGCTGTCTCTAACCCACCCGTGACAACCCACTCATACTAACATACTCAAATACACTTGCATTGTGCACTTCGGGGTCATTTTGAACAAACCAACCCTATACATAACGCAAAACGTGCGCCAAGTTTGGCTGAAAAGGGACGTTTCCCATCTAAACTTACATTTAAGACCCCATTTGGCCATTTGATACTAGGACTGATGTACATAAGTCACTGTAACACTTGCTGCATGAGAAACACGAAAACGTGCCCTTTGTAGATGTGCAATGATTTTTATCTATAGAGTTCCAGTGATAGTGTTGACGTAGTTTTGAACCCTGAGGTACATGTTTTGTGAATTCTGTTTGTGAGCAGCATATCCAACATTCAGCACtgataaatatactgtatatactctGTGATTGAGGTGTTTTATCAGCAAAACCAGAATGTAATGCAATTCACACGTTAGATCACAGAACATCGTAGATGTTGTCCCAAATACCTGggcttttttctattttgtatcacttaatatttatgatctttatgactttttttaaaaggcagCAACAGGAGGTGAAATGTGGCTAAACTACTATGCTTTCCCAATCTTTTTTGCACTCTGAAGTAGCGGTCAGGATTCGCAAAAGTCCCAAACATAACATCAACTCCTTTGTCTGCCTTTCATTCATTTCCATATCGTTTTGTCGATTAAATTATGATGATGAATATCCAGTAGGAAGAGGGCCCGATATACAGTAGTATaccaaaaataatgtaaatattatttctaatttatttctatatttttattatgcgtAATTTAAACTGATCATGTAGGGGCATTGATGTATTTgcgaattaataaaaaaaaatgaatggaattATAAAGGACTAGAATGTCTATCCACCTGTAAGCGGGTGGATTTATGTGGTCGTTCACTGTTCAAATCACAGCCCGTGGCATAATTCGTCCCTTCAGAGAACCGAAGCAGATTCATTTCCCTCAGGTAATATATTCAGTCAGACATCTCCCAGTGTATCACTGTGTTACATTCATGACCACTGTAAGGGACAGATGTACTATTGTGAGTGAATTTGTCACAGATGTACCAGACCTGCTTCTTATTTACTGTGCCATCACCTGCCGTTTTTCTTTGTACTTTGAGTGAAACGCTGCACACTAACTAACCAATTAGGAGGTTTACcacttaaaaaattattttaaagcttcatATTCAGTCTATacaaatctgtataaaaaaaaaagtctacttTGTAATGTCAGCTGCAGttattcacaatatatatatatatatatgccatatTTTATACCTGCATCTCTTTTAAATCAAGACAAAGCAATGTTGTACCATATAGGTGTGCTCATAAAcatgattgttttctttttgacatGAATGTTGCAAACGTTTGATTTCGTTTcattgtaataattttgtaCTACTAATCTTATCTACATACATTAGTCAGTGTACTAACAAATAGACTTCAGGCGATAACTGCCACCTGTGCTTAACTAATATAAATGGCAACAGATGATTTAGAGATTGTATATCCGTGTTTTTCAGAGCATCCTTTGGGTTCAATCTGCACTTCAGTGGGAATTATTTCTTTCAATCAGGCAGACGTGAACTGTAATGGCGTCAGAGAGGTGTTTGACCTTATCTAGGATGACCTCAGGGTTTTGTAACTACAACATCTACTGTAGTGCAATATAACGTAGGAGATCGGACCGGGTGCTACGAACATCTCTGCCAAGAACATAATCTGTAAGCCAGAAAATGGTCGGTATGACCGAGACTTTTAATTAAAGCTCTTGCTGGTGCGGAACATTAGGATAAAACCCTTACAATAAGCAAAGTTTCTGCTTTTGCACTGGCCGCTAACATTGTAGGATACACTTCAGGGCCAGCTTCGTGTGGCATGATAGcaggtaaaaaacaaaacaaaaaaaaaaaactgtcctttTAATATCAACACAGCTATGACAACTATATAATCTCATTTACTGGACCAAATTCCTCAATATCTGGTCAATTTAACAAGAACCCAGTGTTGGACATGTATCTATTTTCATGTATGAATGTTGTGAATGTGCAGTGTCTTGCTGTAATAATGCTTGGTGTTCCTTCGACTTGTCTTCTCACTGTGAATGTTGAAATGATTCAGATGTATGTGTGAGTAACTGTGTTATGTGTAACCTTCACCCTCACTGTATGTCCAGTTCTTAAACTGACCTGTGCTTCACCTCCCTGCCTCTCTGTGAGTTTACACCAATTTGCACactaataaatgttgtttatacaTA

Function

symbol description
pgbd5 Predicted to enable transposase activity. Predicted to be involved in non-replicative transposition, DNA-mediated. Predicted to be active in nucleus. Orthologous to human PGBD5 (piggyBac transposable element derived 5).

NR:

description
PREDICTED: piggyBac transposable element-derived protein 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254821.1 True 4517 mRNA 0.45 7 8791156 8807527

Neighbor

gene id symbol gene type direction distance location
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding upstream 8388 8779155 ~ 8782768 (+)
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding upstream 56198 8721028 ~ 8734958 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding upstream 143705 8644655 ~ 8647451 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding upstream 235753 8501459 ~ 8555403 (+)
LOC122356333 LOC107601782,LOC107666363,LOC107725459,LOC107563040 coding upstream 312082 8436620 ~ 8479074 (+)
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding downstream 85466 8892993 ~ 8900282 (+)
acta1b act2,actc1a,LOC105907633,LOC107678759,LOC108430668 coding downstream 94023 8901550 ~ 8905011 (+)
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding downstream 98359 8905886 ~ 8909793 (+)
pdcd2 pdcd2,LOC107725489,LOC107666434,LOC107601856,LOC107676576,LOC107743527,LOC107552926 coding downstream 133201 8940728 ~ 8942899 (+)
zgc:153169 zgc:153169,LOC107725444,LOC107666437,LOC107601788,LOC107552913 coding downstream 140223 8947750 ~ 8950582 (+)
G92048 NA non-coding upstream 104 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 1955 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 3307 8786988 ~ 8787849 (+)
G92045 NA non-coding upstream 4292 8786595 ~ 8786864 (+)
G92042 NA non-coding upstream 7526 8783008 ~ 8783630 (+)
G92066 NA non-coding downstream 29189 8836716 ~ 8896909 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding downstream 121915 8929442 ~ 8965589 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding downstream 242840 9050367 ~ 9097905 (+)
G92111 NA non-coding downstream 332690 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 456537 9264064 ~ 9275699 (+)
sf3b5 sf3b5,LOC107601807 other upstream 51061 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 108104 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 480332 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 904466 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 952211 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 218416 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 273321 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 353990 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 622651 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1397586 10205113 ~ 10249725 (+)

Expression


Co-expression Network