trim8a (trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648)


Basic Information

Item Value
gene id trim8a
gene name trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6115706 ~ 6133936 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254838.1
TGACCAGGGAAGGGGGGAGTATGTGAACTGTATCCTGAGTTGCAGTCCTTTGCCTGCATTCCTCTCATCTAGGATTAgcttgaaaggaaaaaaaaatcataaataataacagacGCAGATTGGAATACGGCGCTGAAGCATCTGCTTTCAATCGGGACTAACGCTTTAAAGGACGCGATACCCCTGGATGATCGCAGAACTGGATCGGTTCGCTTTACGCGAAGCGTCTATATAAAGGGCATACAAATGAGAGGAAAAGTAAATAGATACGTCGTTTTTAATTCGCGTTAAACAGGAAAACAAGATGGCTGATGAGCGATAACAAGGGCCAAACGATATCGTCTCCTTTAAGAGCAACAAAGgcgTCTTTCGTTAAAACGGAACGCTGAACGCCTGATTCTTCCTCTCACGCCCGCCTGTGGTATTTGATCGCTGACTAACTTTGCCAGGAGCACAAACGCTCCCCTGGCATGTTCGGGTCTGATCGGCAGCTGTTTCTCCGGGGCTTCTGCGCTCGCGCGGCCTTCTTCGACCGAGCCAACACCTGGATCTAGCTGAAAGAGTTGCGAGGATGAGCCAGACCTTGTCGGGACGCCGCTAAAACCTGATGCTTTGGATCGACTCGAAACCGGATGTCTGATCAACTGCTTGAGATGGCCGAGAACTGGCGGAACTGCTTCGAGGAGGAGCTCATTTGTCCCATTTGTCTGCACGTGTTCGTGGAGCCCGTGCAGCTGCCGTGCAAGCACAACTTCTGCCGGGGCTGCATCGGCGAGGCCTGGGCCAAGGACGCGGCCAACGTGCGCTGCCCCGAGTGCAACCACGCGTACAGCCAGAAGCCCAGCCTGGAGAAGAACATCAAGCTGACCAACATCGTGGAGAAGTTCAACGCGCTGAACGTCGAGAAAGCTCCGGCCGTGCTGCACTGCATACTGTGCAGGCGAGGGCCTCCTCTGCAGGCGCAGAAAGTGTGTCTTCGTTGCAACGCGCCGTGCTGCCAGTCTCACATCCAGACGCATCTCCAGCAGCCCTGTCCCGCTCCTGGACACCTCCTGGTGGGGGCCGAGGAGGTGCGGGCCTGGAGCTGCCTGCACCACGACGAGTACAGGCTCTACCACTGCGACGCGGAACAGGTGGCGGTCTGCCAGTACTGCTGCTTCTCCAGATGCGCGCCCAACCACGGCCACGCGGTGTGCGACGTGGAGGTGCGACGCAACGACATCAGGCATATGTTAATGAAGCAGCAGGATCGCATTGACGATCGAGTGAAAGACATCGAGGAGCAGCTGTATAAGTTGGAGTCTGACAAACTGCTGGTGGAGgatAAGGTACGGCAGCTGAAGGAGGAGGTGCGTGTGCAGTATCACAAAATGCACCAGCTCTTAGAAGATGACCTGGGGAGAACTCTAGAGGTGCTGGATAAAGCGCACTCCAAATACTGCCAGGAGAACTCGACCCAAACCCTCCAGCTCAATGAACGCCGTCAGGAGGCCAAGAAACTGCTCAGCTCTGTCCAAGTTGTGTTTGACAAGGCAGAGGATATTAACATTATGAAGAACACAAAACCAGTAAAAATACTCATGGACAGATCGCAGTCATGCACGGGCAGTGTTCTGCCTCCTTTTAAAGTGGGTCATCTTAATTCCAAAATATTCCTGTCTGAAGtctcaaaaaaggaaaagaaccTGAGAAAAATACTGGAAGCACCATTCAGTACTCCCGCGCACTTCCTCCAGAGCGTTTCTGTCCACCCCTCCAGTGTGAATACCTCCGGGGGTGAGAAACGCAAACACTCCACGGCCTTCCCTGAAAGCAGCACCAGCCTGCTGGAGTCCTCGTCAGGCCCCATGAGCAAACAGCAGTTCCTGGGTCAAGGAGCCAACTCCACAGACGGGCCGGCATCGCAGCCACCCATGGCTCCCTGTAGCTCCACCCAGCACATTGTAGGCCTTAGCAGTAGCAGCGGTGCCCAGTCTGTCCATCATTCCAGCTCTGTTTTTACTCCCGCCGACTACCCCAACCCCAGTTCGTCCCAGCAGGCCATGCTGCCGCAGTACGGCGGCCGTAAGATTCTCATGTGCACGATGGACAACTGTTACTGCTCTAGTGTCCCCTCCATATCGAACCACCGCGGCCATCCTCCCTACCCGCGCTCGGGATCCTTCCCTTGGACACAGGACTATACCCACCCTCTGCCCTCCACGCCATCAATGTCCCAGCCGCTCCAGGGACTCTCCATGCATGACTGGATTGACGCCTCACAGAGCCATAGGCACCCTGATTTCTATGGACTCTACGGGCAATCTTCCACTAAACCATACGTCACCAGTTAACTTCCACTGCAACTCTGGTTAATCTCCAATAACTCGCCCAGTTCCTTAAGGTTCGGTCACATTCGCAAAATTTAAGTGAAATTTTGCGTGCAAAAACAGATCTATTGTCAATAGTGTAGAGATGTATGAAGTCTGCTTTGAACCAAGTGAATTTCAGTGACTAGCTTAAAAATGAGCGAAATCTGTGTGGGGAAAATTTTCCGCCCTCGCGTGAAATTCCCAATTGCATGATTTCCTATTGGAATGACTGGATTTTGCCTGTGAAATTTTGCCAAACGACGGCAGATGTGACCGCACCTTTTACACCTTTTTTGCCCGCCTGTCTTTCAAAATCAGGCTTGTTAACATCACAATCTAAAGGACAGCACTTTTTAGCATGCAATGCAAGCCTCTCGGCGCTTCGAAACACGATCTCTTCCAACTTAAGCATTAAAACCTTTTCTGTCCCTGCACAAAACATGATAAGGGAATCTTTCTTTGAGAAATGTGGAGGCGGGACCCAGCtgagtttttaaaattacaaacagaTTTGAGATAATTGCAGAGGGTTCTGACCCGGAGCAGATAATGATCGCTTGTAAATGGAGTTAGTTTTAACTCCTTTCACCTCCCCTCTTCCTGCCTTTAGGGCATCTGGAATCTGGTTGGTTTTTATGATGTGGTAAAGATTCCTTTTAACATtgttattaaacttttattaataGTAGGTGGggaatattgttatataaaataaagtgggaTAGAGTgcgtttattatttatcatatttgacCTCTACCAAGTTTCTGCTGAACCGCTCCACAGGTGACCATGTGACTGGGAACTCTGATTATGATTTGACGTGTTACCTACATTCCTTAGAGGCCAGAGGAgcttatttttctgttatgtttacaattatgtatgaatatttttttcattaagtttCGGTAGGTTGGAAAAGATCAGTACAAAAACTCAATGCAGATTCATTTGGAGATTTTCCACTGAGCATGTCATGAACTAGTACTTCTGGATTCTGCTTCCTGTCAGATAATGTTACTTCCTGCATTCAAGCACATGTGAAGCATGTTCAGGATGATTGGTGCCTACACACACCTCTCAGTCTTATAATGGTGTAGATATACTTCCTGTTTAGTCGGTGACGGTGAAGCCTGATGGGGTCTGTGGTCACCGTGAAACACTGATTGTCATGAACATGCTGAAAAACTTCCTGTTTGTGATTGTAGACTTGCAGGAAAGCCTTTCTGTGCACTCAGAACTCCAAGAGACTCGACTGAGTGAGACCAGAGGACAGTTGGTGacattttttcacatattttatacGAGAAAACTGAATGGACTGCATACATTTGGagatcaaaataaatgtgcttcaaaaaagtattaaatgctGGTTTAAACAAAAGTGTATGCAATCTCGTTTATAATTGTCTAATGTAGACTCTTTTTGCTGGTAGAGGTTATGAATACACAGCTTCTCAACCGGGAGGTCTCAGCAAACTTCTAGTCTTGACTTAAAATAAGACCAACAAGCATTAAAATAAGTTCAAACAACTTAGAGTCagtatggttttgttttgtttttttggaaagaaacAGGGTTACCGCTGTCTTAAAAAACCGGGAAgaactttgttgttttttagacCTTTCCAGGttatgcaaattaataaaatgttgtaagTCCA

Function

symbol description
trim8a Predicted to enable metal ion binding activity. Located in nucleus. Is expressed in central nervous system; midbrain; and retina. Orthologous to human TRIM8 (tripartite motif containing 8).

NR:

description
PREDICTED: probable E3 ubiquitin-protein ligase TRIM8

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K12001 TRIM8; tripartite motif-containing protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254838.1 True 4023 mRNA 0.48 7 6115706 6133936

Neighbor

gene id symbol gene type direction distance location
gabra2a si:dkey-52k1.6,gabra2,LOC107747556,LOC107666515,LOC107569424,LOC108262858 coding downstream 56562 6045262 ~ 6059144 (-)
gabrg1 si:dkey-155h10.3,gabrg1,LOC107747559,LOC107666522,LOC107667066,LOC107585224,LOC107569420,LOC107733747 coding downstream 75797 6029208 ~ 6039909 (-)
gabrb1 gabrb1,LOC107747557,LOC107666521,LOC107733746,LOC107585222,LOC107667065 coding downstream 106176 5987132 ~ 6009530 (-)
atp10d atp10d,LOC107747560,LOC107556926,LOC107666484,LOC107733756,LOC107667075,LOC107585234 coding downstream 133601 5961519 ~ 5982105 (-)
dapp1 dapp1,LOC107747563,LOC107667071,LOC107666557,LOC107733757,LOC107585227 coding downstream 156221 5952370 ~ 5959485 (-)
sufu sufu,LOC107666454,LOC107667077 coding upstream 677 6134613 ~ 6146031 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding upstream 78605 6212541 ~ 6219756 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding upstream 120661 6254597 ~ 6263995 (-)
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding upstream 295446 6429382 ~ 6433028 (-)
abcg5 abcg5,LOC107747536,LOC107733783 coding upstream 299541 6433477 ~ 6444448 (-)
G91364 NA non-coding downstream 14523 6099268 ~ 6101183 (-)
LOC122356110 NA non-coding downstream 186215 5926993 ~ 5929491 (-)
G91210 fgfr3,LOC107733743,LOC108263592 non-coding downstream 383028 5731256 ~ 5732678 (-)
G91085 NA non-coding downstream 853583 5261065 ~ 5262123 (-)
G91066 NA non-coding downstream 984757 5130351 ~ 5130949 (-)
G91395 LOC107666411 non-coding upstream 49698 6183634 ~ 6183997 (-)
G91406 NA non-coding upstream 72158 6206094 ~ 6207963 (-)
G91420 NA non-coding upstream 156945 6290881 ~ 6292203 (-)
G91454 NA non-coding upstream 312562 6446498 ~ 6448426 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding upstream 402665 6536601 ~ 6538368 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 42509 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 189029 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1335974 4690882 ~ 4779732 (-)
LOC122356061 LOC107699307,LOC107586507,LOC107708387,LOC108442385,LOC108263686,LOC107727357,LOC106576682,LOC104955882 other downstream 1426538 4672966 ~ 4689168 (-)
hcar1-3 LOC107590023,LOC107678489,LOC107707144,LOC107699282,LOC107586503,LOC107736563 other downstream 2060293 4052743 ~ 4055413 (-)
LOC122356805 LOC107666373,LOC107587882 other upstream 86239 6220175 ~ 6227272 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other upstream 224265 6358201 ~ 6396426 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 319595 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1675913 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1909629 8043565 ~ 8047901 (-)

Expression


Co-expression Network