abcg8 (abcg8,LOC107666472)


Basic Information

Item Value
gene id abcg8
gene name abcg8,LOC107666472
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6444614 ~ 6451508 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254849.1
AGCGGGTGCTTCTCTAACCCGAGAGGCCAGACCAGAGGGGCACAGACCCCTTTCTACCACATCCACCATGTCAGACCAGAGCGCTTCCCCTCCAGAAGACAGCTCCGGCTCTACAAACGACAAACAGAACAGGACACAGGttcaagacatttttttctcatctcCAGAGGAGGACAGCAGCTTGTATTTTACGTACAGCGGAGGTCGCAATGAAGTGGAAGTCCGCAATCTCAATTATGaggtGGATATAGCTGCACAGATACCCTGGTATGAGAGGCTGTCGGAGTTCAAGATGCCCTGGGAGATGCACAGCAACAAGCAGACCGTCATACAGGACCTAAACCTCCGCGTGCACAGCGGCCAGATGCTCGCCGTCATCGGCAGCTCAGGCTGCGGGAAGACCTCCTTACTGGACATCATAACGTGTCGAGATGAGGGCGGCACGACGAAGTCGGGAGAGATTCTGATCAACGGGAAACCCTCGACACGTTCCCTGGTGAAGAAATGCATTGCGCACGTGCGGCAGGACGACCGTCTCTTGCCGCATCTCACGGTGCGAGAGACGCTGGCGTTTGTGGCCAAGCTGCGGCTGCCTGCGCACTTCACCCAGCAGCAGAGAGATCAACGGGTGGACGACGTCATCGCGGAGCTGCGCCTGAGGCAGTGCGCGCACACGCGCGTCGGGAACGAGTACGTGAGGGGCGTGTCCGGcggagagaggaggagggtCAGCATCGCCGTGCAGCTGCTCTGGAATCCAGGTATTCTCATCCTAGATGAGCCTACTTCGGGTCTGGACAGTTTCACAGCCCATAATTTGGTCATTACATTGTACCGTCTGGCTCGAGGGAACCGGCTGGTGTTGCTGTCAGTCCATCAGCCTCGTTCAGATATCTTTCAGCTCTTTGACCTGGTGGTGCTCCTGTCTTCTGGCACAGCTGTGTACTGCGGTCATGCCCAGCACATGGTACCTTACTTTACTTCTCTCGGATACCCATGTCCGCGATACTGCAACCCGTCTGACTACTACGTGGACTTGATAAGCATCGATCGGCGCAGTCCTGAAAAGGAAGCGCAGTGTTTGGAGAAAGCCAGGGTGCTAGCGGCCCAGTTTGTAGAAAAGGTGAAGAACACAGAGGATTTCATGTGGAAATCAGAAGATGGGGGTTTCCCGGCGCTGGATGCCCCGCAAAGTGTTCCTCCCGTCCCGAACAAGGAATCAGCGATCACAGTTTGCAAAAAGAAGGATCGCCTGCCTGGAAAACTGCAACAGTTCACCATCCTAATCAAacggCAGGTATTTAATGACTTCCGAGATCTGGTGACGTTGGTGGTTCATGGTCTGGAAGCCTTGTTGATGTCACTGCTCATCGGTTTCCTTTATTTCGGAGCTGGAGACGAGGGTCTTTCTGTCCAAGATACCGTGGCCTTGCTCTACATGATAGGAGCTCTCACACCCTTTGCTGTGGTGCTGGACGTCATCGCAAAGTGTCATTCAGAGAGAGCCATGCTTTATCATGAACTGGAAGACGGCATGTACTCAGTCACCTCGTACTTTTTCGCCAAGGTCCTCGGGGAGCTGCCGGAGCACTGCGCCTTTACGCTGGTATACGGCGTGCCCATCTACTGGTTGGCTGGACTCAACAGCGCTCCCGACCGCTTCCTGCTCAACTTCCTGTTGGTGTGGCTGATGGTGTATTGTAGTCGCTGCATGGCTCTGTTTGTGGCGGCCGCCCTGCCAACGTTACAGACTTCCTCTTTCATGGGCAACGCGCTCTTCACCGTCTTCTACCTGACGGCCGGCTTTGTCATTAGTCTGGAAAACATGTGGCTGGTGGCGTCTTGGTTTTCTTACGTATCGTTCATGCGCTGGGGTTTTGAGGGAACGCTGCAGGTTCAGTTTCGTGGGACTAGGATCCCGATCACTATCGGGAACCTCACCGTAGATTTCGATGGCATTAAGGTTGTGGAGCTGATGAAAATGAACCAGTATCCACTGTATTCCTGCTACCTGGTGCTTATTGCGGTTGCTTTTGTGTTCATCGTGCTCTATTTTCTGTCACTCAAATTCATTAAGCAGAAGTCCAGTCAGGACTGGTGAAGAGGACAAATCAGCGTGAGGTCAAGGCCACACCGCAGCTTGTTTTCGCAAAGAAACCCACATCTAAAAAATGCCCATCCACAGCACAGACCTTGCAAACCGAGATCTTTTAGACCTTTTTAGACAAGTCTCTCTCCACAACAAAAatatgatgatatatatatatatatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtgtgtgtatgtatgtatgtgtatgtatgtgtgtgtgtgtgtgtgtgtgtgtgcattttactACCACTAACTGCCGCTGGATGGCAGTAATGTACTAcgtttgcacactttttttaagttaaaataattactttttttttctggtaaacCATAAGAAGTCATGTTTGGTAGATAGCTTTAAACAAATTTACTACAGCATGTAGatttcttttatgtatttactattattttcttttgtaattcAGAATCGCTTTGTatgtataacattattatggaaCGGTGTACTTCTGCAGGAGCTTTGAAAGCTTTGTTAGAGATTTAGAAATctacaaatataaatgcttgtgttttgttgttgttgttttaatgaaaaaagacaCTGCATTCAGATCAACAAGCTATGCATTCGTTCCA

Function

symbol description
abcg8 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Human ortholog(s) of this gene implicated in arteriosclerosis; familial hyperlipidemia; gallbladder disease; obesity; and sitosterolemia. Orthologous to human ABCG8 (ATP binding cassette subfamily G member 8).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05684 ABCG8; ATP-binding cassette, subfamily G (WHITE), member 8 (sterolin 2)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254849.1 True 2723 mRNA 0.49 13 6444614 6451508

Neighbor

gene id symbol gene type direction distance location
cep170aa LOC107747537,LOC107666471,LOC107587839,LOC107733772 coding upstream 15227 6396742 ~ 6429387 (+)
adss2 adss,LOC107733748,LOC107666526,LOC107698758,LOC107585249,LOC101162945,LOC107747588 coding upstream 202082 6227540 ~ 6242532 (+)
si:ch211-132e22.4 si:ch211-132e22.4 coding upstream 232715 6210396 ~ 6211899 (+)
dctn1b LOC107747544,LOC107587846,LOC107666474,LOC107667063,LOC107585248 coding upstream 234356 6184574 ~ 6210258 (+)
nat8 LOC107666562,LOC107587914,LOC107747598,LOC107733716,LOC107667058,LOC107585290 coding upstream 261586 6180654 ~ 6183028 (+)
ppm1ba ppm1ba,LOC107733761,LOC107585253,LOC107747533,LOC107666482,LOC107602505,LOC107698745 coding downstream 65375 6516883 ~ 6543229 (+)
slc3a1 slc3a1,LOC107747531,LOC107666489,LOC107698747,LOC107733775 coding downstream 93999 6545507 ~ 6553326 (+)
camkmt si:ch73-54n14.2,camkmt,LOC107602502,LOC107585255,LOC107733780,LOC107698723,LOC107666367 coding downstream 109724 6561232 ~ 6654233 (+)
six3a six3,six3a,LOC107733790,LOC107585256,LOC107711438,LOC107666567 coding downstream 252579 6704087 ~ 6707392 (+)
LOC122356727 LOC107585260,LOC107585259,LOC107733721,LOC107733720,LOC107698744 coding downstream 389089 6840597 ~ 6843540 (+)
G91324 NA non-coding upstream 74086 6370210 ~ 6370528 (+)
G91250 gabrb1,LOC106937613 non-coding upstream 442552 5998442 ~ 6002062 (+)
G91172 NA non-coding upstream 488016 5954891 ~ 5956598 (+)
G91180 NA non-coding upstream 516481 5927834 ~ 5928133 (+)
G91179 NA non-coding upstream 517866 5926358 ~ 5926748 (+)
G91343 NA non-coding downstream 1236 6452744 ~ 6453076 (+)
G91492 NA non-coding downstream 242154 6693662 ~ 6699169 (+)
LOC122356144 NA non-coding downstream 271772 6723280 ~ 6755554 (+)
G91529 NA non-coding downstream 363502 6815010 ~ 6861516 (+)
G91545 NA non-coding downstream 491059 6942567 ~ 6942795 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other upstream 86597 6254603 ~ 6358017 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other upstream 457635 5982518 ~ 5986979 (+)
lamtor3 lamtor3 other upstream 492097 5951217 ~ 5952517 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other upstream 1173367 5261036 ~ 5271247 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 1246210 5177718 ~ 5198404 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 641636 7093144 ~ 7147218 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other downstream 1320052 7771560 ~ 7787307 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other downstream 1384672 7836180 ~ 7838945 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other downstream 1407190 7858698 ~ 7886690 (+)
G91833 slc37a1 other downstream 1854978 8306486 ~ 8310824 (+)

Expression


Co-expression Network