abcg5 (abcg5,LOC107747536,LOC107733783)


Basic Information

Item Value
gene id abcg5
gene name abcg5,LOC107747536,LOC107733783
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 6433477 ~ 6444448 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254850.1
GGAATTCGTTCGAGAGACAATGCATCGGTTATATTCAGTGCAGGACGTTTTACAGAATAACGGGTTGAATGGATCTTTCAAGGTGGCATCGGAGATGGGAACGTCCCGAACGAATTCGGACTGCGTCGAATCGTCGTGCAGCCTGAGCGTCAGAAATGTGTCTTATACCGTGAGTGAGCGTGTAGGACCCTGGTGGCACCTTTCTTCTTTCAGGAAAAAATGGACAAGGCAAATACTGAATCAAGTGTCATTTCATGTGGACAGCGGGCAGATAATGGGGATTCTGGGGAATTCAGGTTCTGGAAAAACCACTCTGTTAGATGCTATAGCAGGACGAATCGGGAACTCTGGGAAACTCCTTGGGGAGGTTTTTGTGAACGGAAGAAAGCTAAAAGCTGAGCAGTTCCAAGACTGTTTCTCTTATGTGCTCCAGagtGACAATCTGTTGAGCTATCTGACTGTGGAGGAGACGCTGACGTACACGGCTCAGCTTGCTTTGAGAAAACACTCTTCTGAGGCCATACGCAAGAAGGTAGCTGCGGTCATGGCAGAGCTGAGTCTGGGACATGTGGCTCACAGCGTGATTGGAGGCCGCATTTTCCCAGGCATTTCTGGTGGAGAGAGAAGGAGGGTTTCCATAGCCAGTCAGCTGCTTCAGGACCCGAAGGTGATTCTCCTGGATGAGCCGACCACAGGACTAGACAGCATGACGGCTAATCAGATCGTGGTGCTGCTGGCTGAACTGGCCAGAAGAGATCGAATTGTCATCGTGACCATCCACCAGCCCCGTTCTGAACTATTCAGGATCTTTAACAGAATAGCCATCATGAGCCGAGGGGAGCTGGTGTTCTGTGGGAAGCCTGAAGAGATGGTGGATTTCTTCAGCAGCTGTGCATATGAGTGTCCTGAGTACTGCAACCCTTTTGATTTCTATGTCGATCTGACCTCTGTGGACACACGCTGCAGCGAGAGGGAAGCCGCCACCTACAGCCGCATGCACGACATCACATCAGCCTACCAGAACTCAGAGATCTGTACAAGCATGCTGGGAAGGATCGAGCAAAGCTGCCAGAGAGCAGACAAACCCATGATCCCTTTCAAAAGCACGGAGTCCCCCAGCTGCCTGTCCAAACTGAATGTCCTCCTGAGGCGGACCGTGCGTAATATGTCTCGTGACCGGATGGGCATTCTCATGCGCCTCTCTCAGAATCTCATCTATGGCCTcttcattgctttttttctcaCGAGGCTGGATAAGGATGTGACAAAAGGTGCTGTACAGGACAGAATCGGCATAATCTACCAATCCATGGGTGCCTCACCTTATACTGGCATGCTGAATGCTGTAGCTTTATTTCCTGCTTTAAGGGCCATCGCTGACCAGGAGAGTAAAGATGGCTTGTACCAGAAGTGGCAGATGTTTCTGGCTTACTTCATCCATATCCTGCCCTTCAGTATTATCAGTGTTTTCATCTTCACCTCTTTCTTGTACTGGACCGTTGGCATGAACCCAGATCCTGTGcgctttgtgtgtttttcagccGTGGTCATGGTTCCTCACATTGTAGGTGAACTTTTAACACTGGTCTTGTTGGGGGTCGTTCAAGACCCCAACATGGTCAACAGTGGGGTCGCTCTACTCAATGTAGCTGGGATCATGGTGGGATCTGGATTTCTAAGGAGTTTTAAACAAATGCCTGTGGTGTTCCAATGGCTGAGTTATCTGACCTTTCAGAAGTACGGCTGTGAGCTCCTGATCGTCACTGAGTTCCACGGCCTGAACTTCACCTGCACACCTTTAGCTGGTTTGCCAGGCTCATGTCTGGTAGACAGTGGGAACATGATCATAGATCAGGGCTATCCTGGAGCTCTTTCACGTTATACACAAGACTTCCTCCTGCTCTATGCCTTCCTGCCTGCACTCGTGATACTGGGCATCATCAGCTTTAAGATCCGCGATCACCTCGTCCGTCGCTAAGgtcctgagtgtgtgtgtattgacatcaatgttattttatgttttttattttgtttatagaATATCTCTGAATCATATATAGGCCAGTAGCCTACGGTATATCCAGATAACCTCAACATGAAAGCTGAATTCATCAACCTTTTCCACAGTTATTGATTCATTTTCTCAACAGTGTGGTGTACTATTACTGTTTGtggtatacagtatataataattTCCAATGTGACTGTAAGTAATCtgttaaacacaataaatgtgtaataaaatgtgtacctgatgttttcaaatttattaagaatgaaatggcatttgcagcattttaataaaaaaggccACATCATA

Function

symbol description
abcg5 Predicted to enable ATP binding activity and ATPase-coupled transmembrane transporter activity. Predicted to be involved in cholesterol homeostasis. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in arteriosclerosis and sitosterolemia. Orthologous to human ABCG5 (ATP binding cassette subfamily G member 5).

NR:

description
ATP-binding cassette sub-family G member 5

GO:

id name namespace
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0016887 ATPase activity molecular_function

KEGG:

id description
K05683 ABCG5; ATP-binding cassette, subfamily G (WHITE), member 5 (sterolin 1)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254850.1 True 2320 mRNA 0.47 13 6433477 6444448

Neighbor

gene id symbol gene type direction distance location
dync2li1 dync2li1,LOC107666473,LOC107698753,LOC107585292,LOC107747586 coding downstream 449 6429382 ~ 6433028 (-)
zbtb18 LOC107587843,LOC107666464,LOC107747541,LOC107585250,LOC107733762,LOC107698757 coding downstream 169482 6254597 ~ 6263995 (-)
desi2 desi2,LOC107587845,LOC107747542,LOC101155051,LOC107089908 coding downstream 213721 6212541 ~ 6219756 (-)
sufu sufu,LOC107666454,LOC107667077 coding downstream 287446 6134613 ~ 6146031 (-)
trim8a trim8a,LOC107666453,LOC107747550,LOC107667064,LOC107733745,LOC108421648 coding downstream 299541 6115706 ~ 6133936 (-)
prepl prepl coding upstream 109040 6553488 ~ 6560661 (-)
six2a six2a,six2,LOC107666385,LOC107711421,LOC107602488,LOC107602487,LOC107733704 coding upstream 275613 6720061 ~ 6722866 (-)
srbd1 LOC107711437,LOC107666540,LOC107585258,LOC107733719,LOC107698739 coding upstream 344384 6788832 ~ 6840561 (-)
prdx3 prdx3,LOC107733724,LOC107666469 coding upstream 416840 6861288 ~ 6863797 (-)
dennd10 fam45a,LOC107711433,LOC107733722,LOC107585262,LOC107602482 coding upstream 423250 6867698 ~ 6871804 (-)
G91420 NA non-coding downstream 141274 6290881 ~ 6292203 (-)
G91406 NA non-coding downstream 225514 6206094 ~ 6207963 (-)
G91395 LOC107666411 non-coding downstream 249480 6183634 ~ 6183997 (-)
G91364 NA non-coding downstream 332294 6099268 ~ 6101183 (-)
LOC122356110 NA non-coding downstream 503986 5926993 ~ 5929491 (-)
G91454 NA non-coding upstream 2050 6446498 ~ 6448426 (-)
G91459 ppm1b,LOC107582773,LOC107700122,LOC107749348,LOC107698817,LOC107550052,LOC105904124 non-coding upstream 92153 6536601 ~ 6538368 (-)
G91490 NA non-coding upstream 242629 6687077 ~ 6687295 (-)
LOC122357105 NA non-coding upstream 249214 6693662 ~ 6703923 (-)
G91513 NA non-coding upstream 342819 6787267 ~ 6787607 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 37051 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 206205 6220175 ~ 6227272 (-)
gng2 gng2,gbg2,LOC107569409 other downstream 360280 6061685 ~ 6073197 (-)
metap1 metap1,LOC107556924,LOC107733733,LOC107695030 other downstream 506800 5920502 ~ 5926677 (-)
col13a1 col13a1,LOC107678564,LOC107708413,LOC107589579,LOC107727372,LOC107586491 other downstream 1653745 4690882 ~ 4779732 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other upstream 9083 6453531 ~ 6499573 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other upstream 1365401 7809849 ~ 7816379 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other upstream 1599117 8043565 ~ 8047901 (-)
G92267 NA other upstream 2670645 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 3729965 10174413 ~ 10191766 (-)

Expression


Co-expression Network