rnaset2 (LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213)


Basic Information

Item Value
gene id rnaset2
gene name LOC107750751,LOC107702666,LOC107717820,LOC107566062,LOC107660213
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23513815 ~ 23519654 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254853.1
ACAAGGTAAACACGATCAATGCACAGAAGCCGCAGCAgcgtctctttcaggaaaggaaGTGGCTCTGAAAGCATTCTGAAGTGACTCTCGACCACACAGTGTTTCGGAAAGATAATAACTGGGCAGTCCCAAGACTTTCAACCAGAGTAAATAAAAACCGTTTCACACCAGCGCTCTCTTATATCCGCAGGACGTAAAAACTGTATGTGAATTAAACAGGCGTTCCAGACAATAACAGttttctgAACGTTAATGATAAATTCTCGTCTGTCCTCGGTAAGATGAGCGGACTCGCACCATCTGGAGGAATGAGATTCATCGCAGTTGCTGTCATACTTTGTGCTGGATTTTTCTGGCCAACAGCCTCTGGCCATCCTCGGCACGAATGGACAAAACTGATCCTGACCCAGCACTGGCCACAGACGTTTTGCAGTatGGAAAACTGCACAACAAATATAAGCTTTTGGACTCTGCATGGATTATGgCCCAACACTGGCATGAGGTGCAACACATCTTGGCATTTTAATGCCAGTCTGATTGAGGACTTAATACCAGAGATGAAGAAATACTGGCCAGATCTACTGGTGCCTTCTTCCCCCGAATTTtgGAAATATGAATGGACAAAACACGGAACCTGTGCTGCGAAAGCAGAGTCTCTGAACAGTCAACATAAATACTTCAGCAAGGCTCTTGAGCTGTACCACAAGTATGACCTTAATAGtgttttaaagaaaaactataTTGTGCCTTCTGAGCAGCACTACACActggatcaggtggaGACCGCCATTACTAGCGTGTACAACGTGAAGACAAAGATTCAGTGCGTCCATCCGGGAAAGGGAGGCCAGGTTCAGATTTTGGGTCAAATAGAGATCTGCGTCGACAGGGATTTCCAGCTGATCGATTGCGAAAAGTCAACCGAAGAAATCTGGAGCGATGACATCCCCGCAGTGGCTGTCAGTGGCCAGTCAGAGCTCAGCGTGTGTGATCAGTCTGTGCCGGTCTATTACCCCCCAGTGCCCGGCAGATCATAGAGGTGGGCAACCCCAGACCTCGTGTGCGAGCGTGGAATCACTGAGCATAACAAGACGAGAAGTCATTCTGTCTAGCTTTTGAAATCCTGGAAACAGAGGAAAGTCTTTCCTGTTTAcactgtctttttaaataattgcacaataaatgttttaaataattctgctGGAAAGATATAGTGACGATTTAAGGGTGTATGGACTGCTGTATTCTATGGATACtgggtcattttttttattggtcttgTTGGTTTTACAGTGTATCTTACTGAGCCATACTTTTTTGGAGGGgtgaattttattaaaaacgtgTCCTGattacattttccacaaaaatttcgaagaaaaatttaaataaagcgtGTTACACATTAGGAAAGGTTTTTATCGTTATAACAATTTTCATGAAAGTTAAACACAGATCCCACCTGACAACAGTGCCTATGGACATTTTACTTTTCTCCAATTTACATTATTCAAAACTACTCTCATTTAGTAGTACAGTAAAACCATAGAACTATGTATAAATGTTTGACGGTATAGCagttagaaataattttttagcaATGTGTTCAATTTCCACTAAAATCACATTCAGTGATCCTTAAAGCAAACCAAGTCTTATCTATTTATGTTTAGTCTGTGATGTTCTGCCTTTGTGTGTTTCATCTGATAAATTTGTTATTATGATTGGGATTGAAAGAGGCCATTCATGTCTTAATTTGCAGTGTTAATGTGAAAAATCCGTGCTAGGTTTTGAGCTTTGGGCCTAATGGCTGCTGTCCCACGATGCACATTTAAGCTTCTGCCGCTGGAGGGCAGCACATGCgctctgccaaaaaaaaaacaaaaaatcacaTTGCTGTTGTTTACAGATATGTTTTTCACGTGTACGCTTTATGAAAGCATGATGGTTTTGAAGTTAGCATTTCCACAAAATGTTCTGGTTAATAAACAGTGTGTTTGGGgccttttcttttcaaatacaATTATTAGGAGGCGGCCATATCAGATGTGGGCATTTGATACGCAACTCCTCTTGTGAAATACATGCCTTAATGTTCGATTTCACACTGAGGAGAAATTTATACTGCTAGTCAAATACtttgtttttgataaatgtCATACACCATtcacttaaaatgtgtttgtaatgCAGTGGcaactgaataaatgtaaacataaattcCTA
>XM_043254854.1
CACAAGGTAAACACGATCAATGCACAGAAGCCGCAGCAgcgtctctttcaggaaaggaaGTGGCTCTGAAAGCATTCTGAAGTGACTCTCGACCACACAGTGTTTCGGAAAGATAATAACTGGGCAGTCCCAAGACTTTCAACCAGAGTAAATAAAAACCGTTTCACACCAGCGCTCTCTTATATCCGCAGGACGTAAAAACTGTATGTGAATTAAACAGGCGTTCCAGACAATAACAGATGAGCGGACTCGCACCATCTGGAGGAATGAGATTCATCGCAGTTGCTGTCATACTTTGTGCTGGATTTTTCTGGCCAACAGCCTCTGGCCATCCTCGGCACGAATGGACAAAACTGATCCTGACCCAGCACTGGCCACAGACGTTTTGCAGTatGGAAAACTGCACAACAAATATAAGCTTTTGGACTCTGCATGGATTATGgCCCAACACTGGCATGAGGTGCAACACATCTTGGCATTTTAATGCCAGTCTGATTGAGGACTTAATACCAGAGATGAAGAAATACTGGCCAGATCTACTGGTGCCTTCTTCCCCCGAATTTtgGAAATATGAATGGACAAAACACGGAACCTGTGCTGCGAAAGCAGAGTCTCTGAACAGTCAACATAAATACTTCAGCAAGGCTCTTGAGCTGTACCACAAGTATGACCTTAATAGtgttttaaagaaaaactataTTGTGCCTTCTGAGCAGCACTACACActggatcaggtggaGACCGCCATTACTAGCGTGTACAACGTGAAGACAAAGATTCAGTGCGTCCATCCGGGAAAGGGAGGCCAGGTTCAGATTTTGGGTCAAATAGAGATCTGCGTCGACAGGGATTTCCAGCTGATCGATTGCGAAAAGTCAACCGAAGAAATCTGGAGCGATGACATCCCCGCAGTGGCTGTCAGTGGCCAGTCAGAGCTCAGCGTGTGTGATCAGTCTGTGCCGGTCTATTACCCCCCAGTGCCCGGCAGATCATAGAGGTGGGCAACCCCAGACCTCGTGTGCGAGCGTGGAATCACTGAGCATAACAAGACGAGAAGTCATTCTGTCTAGCTTTTGAAATCCTGGAAACAGAGGAAAGTCTTTCCTGTTTAcactgtctttttaaataattgcacaataaatgttttaaataattctgctGGAAAGATATAGTGACGATTTAAGGGTGTATGGACTGCTGTATTCTATGGATACtgggtcattttttttattggtcttgTTGGTTTTACAGTGTATCTTACTGAGCCATACTTTTTTGGAGGGgtgaattttattaaaaacgtgTCCTGattacattttccacaaaaatttcgaagaaaaatttaaataaagcgtGTTACACATTAGGAAAGGTTTTTATCGTTATAACAATTTTCATGAAAGTTAAACACAGATCCCACCTGACAACAGTGCCTATGGACATTTTACTTTTCTCCAATTTACATTATTCAAAACTACTCTCATTTAGTAGTACAGTAAAACCATAGAACTATGTATAAATGTTTGACGGTATAGCagttagaaataattttttagcaATGTGTTCAATTTCCACTAAAATCACATTCAGTGATCCTTAAAGCAAACCAAGTCTTATCTATTTATGTTTAGTCTGTGATGTTCTGCCTTTGTGTGTTTCATCTGATAAATTTGTTATTATGATTGGGATTGAAAGAGGCCATTCATGTCTTAATTTGCAGTGTTAATGTGAAAAATCCGTGCTAGGTTTTGAGCTTTGGGCCTAATGGCTGCTGTCCCACGATGCACATTTAAGCTTCTGCCGCTGGAGGGCAGCACATGCgctctgccaaaaaaaaaacaaaaaatcacaTTGCTGTTGTTTACAGATATGTTTTTCACGTGTACGCTTTATGAAAGCATGATGGTTTTGAAGTTAGCATTTCCACAAAATGTTCTGGTTAATAAACAGTGTGTTTGGGgccttttcttttcaaatacaATTATTAGGAGGCGGCCATATCAGATGTGGGCATTTGATACGCAACTCCTCTTGTGAAATACATGCCTTAATGTTCGATTTCACACTGAGGAGAAATTTATACTGCTAGTCAAATACtttgtttttgataaatgtCATACACCATtcacttaaaatgtgtttgtaatgCAGTGGcaactgaataaatgtaaacataaattcCTA
>XM_043254855.1
tatttattttttgctgtcaTACTTTGTGCTGGATATTTCTGGCCAACAGCCTCTGGCCATCCTCGGCACGAATGGACAAAACTGATCCTGACCCAGCACTGGCCACAGACGTTTTGCAGTatGGAAAACTGCACAACAAATATAAGCTTTTGGACTCTGCATGGATTATGgCCCAACACTGGCATGAGGTGCAACACATCTTGGCATTTTAATGCCAGTCTGATTGAGGACTTAATACCAGAGATGAAGAAATACTGGCCAGATCTACTGGTGCCTTCTTCCCCCGAATTTtgGAAATATGAATGGACAAAACACGGAACCTGTGCTGCGAAAGCAGAGTCTCTGAACAGTCAACATAAATACTTCAGCAAGGCTCTTGAGCTGTACCACAAGTATGACCTTAATAGtgttttaaagaaaaactataTTGTGCCTTCTGAGCAGCACTACACActggatcaggtggaGACCGCCATTACTAGCGTGTACAACGTGAAGACAAAGATTCAGTGCGTCCATCCGGGAAAGGGAGGCCAGGTTCAGATTTTGGGTCAAATAGAGATCTGCGTCGACAGGGATTTCCAGCTGATCGATTGCGAAAAGTCAACCGAAGAAATCTGGAGCGATGACATCCCCGCAGTGGCTGTCAGTGGCCAGTCAGAGCTCAGCGTGTGTGATCAGTCTGTGCCGGTCTATTACCCCCCAGTGCCCGGCAGATCATAGAGGTGGGCAACCCCAGACCTCGTGTGCGAGCGTGGAATCACTGAGCATAACAAGACGAGAAGTCATTCTGTCTAGCTTTTGAAATCCTGGAAACAGAGGAAAGTCTTTCCTGTTTAcactgtctttttaaataattgcacaataaatgttttaaataattctgctGGAAAGATATAGTGACGATTTAAGGGTGTATGGACTGCTGTATTCTATGGATACtgggtcattttttttattggtcttgTTGGTTTTACAGTGTATCTTACTGAGCCATACTTTTTTGGAGGGgtgaattttattaaaaacgtgTCCTGattacattttccacaaaaatttcgaagaaaaatttaaataaagcgtGTTACACATTAGGAAAGGTTTTTATCGTTATAACAATTTTCATGAAAGTTAAACACAGATCCCACCTGACAACAGTGCCTATGGACATTTTACTTTTCTCCAATTTACATTATTCAAAACTACTCTCATTTAGTAGTACAGTAAAACCATAGAACTATGTATAAATGTTTGACGGTATAGCagttagaaataattttttagcaATGTGTTCAATTTCCACTAAAATCACATTCAGTGATCCTTAAAGCAAACCAAGTCTTATCTATTTATGTTTAGTCTGTGATGTTCTGCCTTTGTGTGTTTCATCTGATAAATTTGTTATTATGATTGGGATTGAAAGAGGCCATTCATGTCTTAATTTGCAGTGTTAATGTGAAAAATCCGTGCTAGGTTTTGAGCTTTGGGCCTAATGGCTGCTGTCCCACGATGCACATTTAAGCTTCTGCCGCTGGAGGGCAGCACATGCgctctgccaaaaaaaaaacaaaaaatcacaTTGCTGTTGTTTACAGATATGTTTTTCACGTGTACGCTTTATGAAAGCATGATGGTTTTGAAGTTAGCATTTCCACAAAATGTTCTGGTTAATAAACAGTGTGTTTGGGgccttttcttttcaaatacaATTATTAGGAGGCGGCCATATCAGATGTGGGCATTTGATACGCAACTCCTCTTGTGAAATACATGCCTTAATGTTCGATTTCACACTGAGGAGAAATTTATACTGCTAGTCAAATACtttgtttttgataaatgtCATACACCATtcacttaaaatgtgtttgtaatgCAGTGGcaactgaataaatgtaaacataaattcCTA

Function

NR:

description
PREDICTED: ribonuclease T2-like

GO:

id name namespace
GO:0016075 rRNA catabolic process biological_process
GO:0005788 endoplasmic reticulum lumen cellular_component
GO:0005576 extracellular region cellular_component
GO:0043202 lysosomal lumen cellular_component
GO:0033897 ribonuclease T2 activity molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K01166 RNASET2; ribonuclease T2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254853.1 True 2226 mRNA 0.41 10 23513815 23519653
XM_043254854.1 False 2184 mRNA 0.41 10 23513815 23519654
XM_043254855.1 False 1912 mRNA 0.40 9 23513815 23519044

Neighbor

gene id symbol gene type direction distance location
rps6ka2 rps6ka2,LOC107750746,LOC107717821,LOC107702677 coding downstream 8123 23465789 ~ 23505692 (-)
sft2d1 sft2d1,LOC107660214,LOC102776618 coding downstream 48964 23447333 ~ 23464851 (-)
prr18 prr18,LOC107750748,LOC107702669,LOC107717824,LOC107660240,LOC107564522 coding downstream 67649 23444179 ~ 23446166 (-)
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding downstream 84751 23425032 ~ 23429064 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding downstream 96964 23332820 ~ 23416851 (-)
csmd1a csmd1,LOC107702659,LOC107717843,LOC106589815 coding upstream 114062 23633716 ~ 23995593 (-)
angpt2a angpt2,angpt2a coding upstream 523982 24043636 ~ 24057904 (-)
LOC122357144 NA coding upstream 750660 24270314 ~ 24270449 (-)
LOC122356174 polr1c coding upstream 779281 24298935 ~ 24302415 (-)
inaa inaa,LOC107588658,LOC107656930,LOC107707692,LOC107716329,LOC107673959 coding upstream 791373 24311027 ~ 24313946 (-)
G96117 NA non-coding downstream 335719 23176802 ~ 23178096 (-)
G96108 NA non-coding downstream 359320 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 483915 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 506352 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 679403 22833829 ~ 22834412 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 19124 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 407677 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 522874 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 550506 24070160 ~ 24070488 (-)
G96295 NA non-coding upstream 587779 24107433 ~ 24107818 (-)
si:ch211-130h14.4 LOC107660236 other downstream 69752 23429646 ~ 23444063 (-)
G96053 NA other downstream 518216 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 690556 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 1065804 22371567 ~ 22448011 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 823095 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 879469 24399123 ~ 24404715 (-)

Expression


Co-expression Network