LOC122356317 (psap,LOC107575616)


Basic Information

Item Value
gene id LOC122356317
gene name psap,LOC107575616
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23157102 ~ 23167091 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254868.1
TCATCAGCATAAAACCTCATCACGCGACCTGGGCTAGTCACTGCAGCATAAACACCTCCAGCGTTCAACGCAGACAAGATTCAAAACACGACCCCAGCGGTTCGAGAGAAGCGTTTGCTCGAGTCACGATGCTTCTCACGCTGCTTTTAGTCTCTACGGCCGTGGCAAGTCCTCTGTTGGGTACAGAGCAGTGTGCCCGCGGTCCCCCCTACTGGTGCCAGAATGCCAAGACTGCTTCCCTTTGTGGTGCCGTCCAACACTGCCAACAGAACGTGTGGAACAAGCCTCAGATGAAATCTGTGCCATGTGATCTGTGCAAAGAGGTGTTGATGGTGGTGGAGCAGCTTTTGAAGGACAACGCCACTGAGGGCGAAATCCTCGGATACATGGAGAAGGCCTGTCAGCTGATCCCTGACGAGAGCTTGGCTGACCAGTGTAAGGAGATTGTTGACAACTACTTCCCCATTCTGATGGGCATCCTTGAAGGAGAGCTGGATGACCCCGGTGTGGTTTGTGGTGCTATGGGCCTGTGTGTGTCCCAGCAGGTAGCTCTGGCTGAAGCTCAGCTCATGTCCAATGAGATCCCTAAGGTGGACCTGAGCCAGCATGTTAGCCCCTTCCTGCTCAACATCCCTCAGCTGCTCTTCCCTCAAGAGAACACCAAGAAAGAGACCCCCAAACAGACCGGCGGCGACGTGTGCCAGGACTGTGTTACCTTCATTTCTGACACTCAGGAGGAAGCCAAAGCCAATTCATCATTTATCAATGATCTACTTGCACACGTCGAGAGCCAGTGTGAGCTTCTGGGACCTGGCATGTCTGATATGtgcaAGGAGTATATCAGCCAGTATGGGCCATTGGTCTTTCAACAGCTTATGTCTATGGAGCAGCAACCCAAGGATATCTGCTTTCGTGCTGGATTCTGCTCCTCAAAGACCAAATCTGTGCGCATGGAGAAGCTGATGCCTGCCAAATCGATCCCTGCTGTCAAGATGTTCCCTGCAACCAAACTTGAAACCCCTGTCAAAAGCGAGCCTGCTAAGAATCTGGTGAAAGTGCGTGACTCTCCTCAGTGTGCCATCTGTGAGTTTGTGATGAAGGAAATTGAGGACAAGCTGGAGGATCAGACGTCTGAGGAAGAGATTGTGCAGGCTGTGGAGAAAGTCTGCGACATTTTACCCTCCACACTCACTGCTCAGTGCAAGGACCTGATTGAGACCTACGGACAGGCCATCATTGATCTGCTCGTGCAGGAGGCCGATCCCAAAACCATCTGCTCTTTCCTCGCTCTCTGCAATGGGGTCAGCCATGTCTcTGTAATGGACAAGCAACGATTTGAGGCGGGTGGCTTCTGTGACGTGTGTAAGATGGCCGTGCGTTATGTGGACGGGCTCCTGGAGCAGAACGCAACTCAGTCTGAGATCGAGGAGGCCGTGCTGAAGGTCTGCAACTTCTTGCCTGATGCTGTCAGAGATGAGTGTAACCAGCTCATTGAGCAGTATGAGCCCCTGCTGGTGCAACTGCTGCTCCAGACGCTCGACCCAGACTTTGTCTGCATGAAGCTAGGAGCATGTCCAGAGGCAGTGCAGAAGCTGCTGGGATTGGAGCAGTGCAGCTGGGGACCAGCATACTGGTGTAAGAACGTGGAGACCGCTTCTCGCTGTAACGCCTTGGATCACTGCAGGCGTCACGTGTGGAGCTAAAGGATGAGCAGAGCGTTCCCCAACAATCTTAAGGAACTAAAAGAGAATTGCTGTAGAGCTGCTTTTCTGTCTTGAAATCAATATTTGGGTTTTCTTTTACAAAGTGACACTTGGAATTGAACTGTCACAGCTAATTTAACAGCCTTGTTTCAAGGGTATGAAAGTTTTTACTGCAATGATGTTTTGAGAGGGCAGGGATTTGGAGGGAGATATGAATGGCAGGTGTAGATATTTGGGAAATACTTGCACTGAAACTTCTTTTTGCGCTATTTTGAAGGTGTAATCTTCTTAGTTTAAAAGTAATCATCTTTTTAGTTGTACAATGTTGGTTTCTTCAAATATGCACAGAGCATGAGTTTATATGGAAATAGATTGTGCCTTTTATCAGAAGAGGGGGGTCTGAGACCCCTgagaatgaaaaatgttttggatgCTCTAATATCCCTGCCTCCCTCTTTAACTGCAAATGCACCTGCAAGGCCAGTGATtttaaaccttttgtttttaatgggtgACACTTTTGGTCCTAAAGGAAGTTAGTGTTGTCTAACTGTCATTGTGTCTAATGATCTGAAGTGATGTCGACATTCTTCATTTGATCCCACTAACTGATGCTTGTCACTGATTGATCTGTCACTGCTACCTAAATGTCAGATTATCCTTGTGCTTCACACTGTTTGGACTGagccgttttgtttttttttttttaattaaattgaaataaaaccaaCTTCAACCC
>XM_043254869.1
TCATCAGCATAAAACCTCATCACGCGACCTGGGCTAGTCACTGCAGCATAAACACCTCCAGCGTTCAACGCAGACAAGATTCAAAACACGACCCCAGCGGTTCGAGAGAAGCGTTTGCTCGAGTCACGATGCTTCTCACGCTGCTTTTAGTCTCTACGGCCGTGGCAAGTCCTCTGTTGGGTACAGAGCAGTGTGCCCGCGGTCCCCCCTACTGGTGCCAGAATGCCAAGACTGCTTCCCTTTGTGGTGCCGTCCAACACTGCCAACAGAACGTGTGGAACAAGCCTCAGATGAAATCTGTGCCATGTGATCTGTGCAAAGAGGTGTTGATGGTGGTGGAGCAGCTTTTGAAGGACAACGCCACTGAGGGCGAAATCCTCGGATACATGGAGAAGGCCTGTCAGCTGATCCCTGACGAGAGCTTGGCTGACCAGTGTAAGGAGATTGTTGACAACTACTTCCCCATTCTGATGGGCATCCTTGAAGGAGAGCTGGATGACCCCGGTGTGGTTTGTGGTGCTATGGGCCTGTGTGTGTCCCAGCAGGTAGCTCTGGCTGAAGCTCAGCTCATGTCCAATGAGATCCCTAAGGTGGACCTGAGCCAGCATGTTAGCCCCTTCCTGCTCAACATCCCTCAGCTGCTCTTCCCTCAAGAGAACACCAAGAAAGAGACCCCCAAACAGACCGGCGGCGACGTGTGCCAGGACTGTGTTACCTTCATTTCTGACACTCAGGAGGAAGCCAAAGCCAATTCATCATTTATCAATGATCTACTTGCACACGTCGAGAGCCAGTGTGAGCTTCTGGGACCTGGCATGTCTGATATGtgcaAGGAGTATATCAGCCAGTATGGGCCATTGGTCTTTCAACAGCTTATGTCTATGCAACCCAAGGATATCTGCTTTCGTGCTGGATTCTGCTCCTCAAAGACCAAATCTGTGCGCATGGAGAAGCTGATGCCTGCCAAATCGATCCCTGCTGTCAAGATGTTCCCTGCAACCAAACTTGAAACCCCTGTCAAAAGCGAGCCTGCTAAGAATCTGGTGAAAGTGCGTGACTCTCCTCAGTGTGCCATCTGTGAGTTTGTGATGAAGGAAATTGAGGACAAGCTGGAGGATCAGACGTCTGAGGAAGAGATTGTGCAGGCTGTGGAGAAAGTCTGCGACATTTTACCCTCCACACTCACTGCTCAGTGCAAGGACCTGATTGAGACCTACGGACAGGCCATCATTGATCTGCTCGTGCAGGAGGCCGATCCCAAAACCATCTGCTCTTTCCTCGCTCTCTGCAATGGGGTCAGCCATGTCTcTGTAATGGACAAGCAACGATTTGAGGCGGGTGGCTTCTGTGACGTGTGTAAGATGGCCGTGCGTTATGTGGACGGGCTCCTGGAGCAGAACGCAACTCAGTCTGAGATCGAGGAGGCCGTGCTGAAGGTCTGCAACTTCTTGCCTGATGCTGTCAGAGATGAGTGTAACCAGCTCATTGAGCAGTATGAGCCCCTGCTGGTGCAACTGCTGCTCCAGACGCTCGACCCAGACTTTGTCTGCATGAAGCTAGGAGCATGTCCAGAGGCAGTGCAGAAGCTGCTGGGATTGGAGCAGTGCAGCTGGGGACCAGCATACTGGTGTAAGAACGTGGAGACCGCTTCTCGCTGTAACGCCTTGGATCACTGCAGGCGTCACGTGTGGAGCTAAAGGATGAGCAGAGCGTTCCCCAACAATCTTAAGGAACTAAAAGAGAATTGCTGTAGAGCTGCTTTTCTGTCTTGAAATCAATATTTGGGTTTTCTTTTACAAAGTGACACTTGGAATTGAACTGTCACAGCTAATTTAACAGCCTTGTTTCAAGGGTATGAAAGTTTTTACTGCAATGATGTTTTGAGAGGGCAGGGATTTGGAGGGAGATATGAATGGCAGGTGTAGATATTTGGGAAATACTTGCACTGAAACTTCTTTTTGCGCTATTTTGAAGGTGTAATCTTCTTAGTTTAAAAGTAATCATCTTTTTAGTTGTACAATGTTGGTTTCTTCAAATATGCACAGAGCATGAGTTTATATGGAAATAGATTGTGCCTTTTATCAGAAGAGGGGGGTCTGAGACCCCTgagaatgaaaaatgttttggatgCTCTAATATCCCTGCCTCCCTCTTTAACTGCAAATGCACCTGCAAGGCCAGTGATtttaaaccttttgtttttaatgggtgACACTTTTGGTCCTAAAGGAAGTTAGTGTTGTCTAACTGTCATTGTGTCTAATGATCTGAAGTGATGTCGACATTCTTCATTTGATCCCACTAACTGATGCTTGTCACTGATTGATCTGTCACTGCTACCTAAATGTCAGATTATCCTTGTGCTTCACACTGTTTGGACTGagccgttttgtttttttttttttaattaaattgaaataaaaccaaCTTCAACCC

Function

symbol description
psap Predicted to be involved in adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway and regulation of lipid metabolic process. Predicted to act upstream of or within sphingolipid metabolic process. Predicted to be located in extracellular region and lysosome. Predicted to be active in extracellular space. Is expressed in blood; extension; peripheral olfactory organ; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in atypical Gaucher's disease due to saposin c deficiency and combined saposin deficiency. Orthologous to several human genes including PSAP (prosaposin).

NR:

description
PREDICTED: prosaposin isoform X1

GO:

id name namespace
GO:0006665 sphingolipid metabolic process biological_process
GO:0005764 lysosome cellular_component

KEGG:

id description
K12382 PSAP, SGP1; saposin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254868.1 True 2442 mRNA 0.48 15 23157102 23167091
XM_043254869.1 False 2436 mRNA 0.48 14 23157102 23167091

Neighbor

gene id symbol gene type direction distance location
c1d c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245 coding downstream 20460 23134818 ~ 23136642 (-)
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding downstream 337645 22802718 ~ 22819457 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding downstream 667779 22485289 ~ 22489323 (-)
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding downstream 833593 22317240 ~ 22323509 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding downstream 873456 22254179 ~ 22283646 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding upstream 782 23167873 ~ 23168903 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding upstream 16824 23183915 ~ 23238517 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding upstream 157691 23324782 ~ 23329933 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding upstream 165729 23332820 ~ 23416851 (-)
tbxtb tb,t,LOC107717823,LOC107660241,LOC107564521,LOC107702670,LOC107572025,LOC107750753 coding upstream 257941 23425032 ~ 23429064 (-)
G96108 NA non-coding downstream 2607 23152205 ~ 23154495 (-)
G96061 NA non-coding downstream 127202 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 149639 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 322690 22833829 ~ 22834412 (-)
G95997 NA non-coding downstream 497790 22658667 ~ 22659312 (-)
G96117 NA non-coding upstream 9711 23176802 ~ 23178096 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 371687 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 760240 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 875437 24042528 ~ 24067735 (-)
G96286 NA non-coding upstream 903069 24070160 ~ 24070488 (-)
G96053 NA other downstream 161503 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 333843 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 709091 22371567 ~ 22448011 (-)
G95972 NA other downstream 734233 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 827810 22326705 ~ 22329292 (-)
si:ch211-130h14.4 LOC107660236 other upstream 262555 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 1175658 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 1232032 24399123 ~ 24404715 (-)

Expression


Co-expression Network