c1d (c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245)


Basic Information

Item Value
gene id c1d
gene name c1d,LOC107551342,LOC107754748,LOC107717833,LOC107702672,LOC107660245
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 23134818 ~ 23136642 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254876.1
CCCTCCGTGAACTCAAAAGAAGTTGGTACTTGCacggcttttattttgaaacaccGCCATTGGAGCGGCGCATGTTTTTCCGTGTTCAGTGGAGTGGAGGAGCAGTGTGTTGTGTGATTACAGTCTGTTCATACAATGGCGGATGATGGTCCAGCAGAAGATTATCCCACTGAAATTGAGGAAAACCTGAATGATTTTGAGTCCTCTGTGAGCTCTGTCCAGAATATGGTCCAAACGTTTGTGTCTGTATCCAGAAGTGACGGTCTACTTAAACTGGATCCTCTAGATCGAGCTAAATTGGATTTGATGTCTGCATACGCCCTCAACTCAATGTTCTGGATGTACCTGGTGACACAAGGAATCAATCCGAAAAACCATGCCATTAAACAAGAACTGGATAGGATCAGGGAATACATGAACAAAGTCAAAGAAATCACGGACAAAAGAAAAGCTGCACGTCTGGACAAGGATGCGGCGTCGCGGTTTGTTCGGAACGCGTTGTGGGACGCAGAggacaagaaaagaaaagactcAACCGAGCATCCTCGCAGAGGAAAACACATACGCTTTTCTTGATTGCTTGAACTGACTGCTGAAACATTGAAGTTCATTGAGAAACTGCGTAAGAAGTCTGTCGTTTGCCCGGTGGTGTGTTATGATGCTTGATTGTGACTAGTTTCAAACTAAAGAAGTtgcaggtatttttttttattattcagttgcatttgcctttttatttcttttgaatcTTGAGTATGTTTTATATCTGGGGTTGCATGATAATACCAGTCCCATTAAAACTACTAAATCCTCTCTTTCTCGTCAGCTCATTTGCAAGTATTGTCGTCTTATGATTCATCATTTTTAGAAAGAGATGAAACGCGTGTCGGTGAAATCCGGTTGCAGGGATTCATTTTTTCTTAGAAA

Function

symbol description
c1d Predicted to enable DNA binding activity and RNA binding activity. Predicted to be involved in maturation of 5.8S rRNA and regulation of gene expression. Predicted to act upstream of or within rRNA processing. Predicted to be located in cytoplasm and nucleus. Predicted to be part of exosome (RNase complex). Predicted to be active in nucleolus. Orthologous to human C1D (C1D nuclear receptor corepressor).

NR:

description
nuclear nucleic acid-binding protein C1D

GO:

id name namespace
GO:0006364 rRNA processing biological_process
GO:0005730 nucleolus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
K12592 C1D, LRP1; exosome complex protein LRP1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254876.1 True 927 mRNA 0.42 5 23134818 23136642

Neighbor

gene id symbol gene type direction distance location
LOC122356266 LOC107671403,LOC107756883,LOC107688264,LOC107592480,LOC107592170 coding downstream 315361 22802718 ~ 22819457 (-)
LOC122356263 ypel5,slc30a10,slc30a1b,LOC107568027,LOC107672346,LOC107601641 coding downstream 645495 22485289 ~ 22489323 (-)
slc30a10 slc30a10,ypel5,LOC107672346,LOC107601641,LOC107568027,LOC107683860,LOC107568031 coding downstream 811309 22317240 ~ 22323509 (-)
zmp:0000000755 LOC107672344,LOC107742077,LOC103371009 coding downstream 851172 22254179 ~ 22283646 (-)
ptk7b LOC107672339,LOC107577581,LOC107742082 coding downstream 907814 22185040 ~ 22227004 (-)
LOC122356317 psap,LOC107575616 coding upstream 20460 23157102 ~ 23167091 (-)
mrps6 LOC107717855,LOC107702688,LOC107660242,LOC107754760,LOC107575615 coding upstream 31231 23167873 ~ 23168903 (-)
micu1 micu1,LOC107702683,LOC107754762,LOC107717828,LOC107660220 coding upstream 47273 23183915 ~ 23238517 (-)
pla2g12b pla2g12b,LOC107702679,LOC107551354,LOC107564523,LOC107660215 coding upstream 188140 23324782 ~ 23329933 (-)
pde10a pde10a,LOC107754764,LOC107717825,LOC107564529 coding upstream 196178 23332820 ~ 23416851 (-)
G96061 NA non-coding downstream 104918 23017198 ~ 23029900 (-)
G96060 NA non-coding downstream 127355 23006279 ~ 23007463 (-)
G96044 NA non-coding downstream 300406 22833829 ~ 22834412 (-)
G95997 NA non-coding downstream 475506 22658667 ~ 22659312 (-)
G95995 NA non-coding downstream 476914 22657670 ~ 22657904 (-)
G96108 NA non-coding upstream 15563 23152205 ~ 23154495 (-)
G96117 NA non-coding upstream 40160 23176802 ~ 23178096 (-)
G96254 myom2,LOC107566060,LOC107660212,LOC107702662,LOC107717844,LOC107572023 non-coding upstream 402136 23538778 ~ 23542300 (-)
G96265 NA non-coding upstream 790689 23927331 ~ 23928060 (-)
G96279 NA non-coding upstream 905886 24042528 ~ 24067735 (-)
G96053 NA other downstream 139219 22994037 ~ 22995599 (-)
G96036 mios,LOC107688218,LOC107592123,LOC107592481,LOC107671474 other downstream 311559 22821981 ~ 22823259 (-)
LOC122356262 stk32c,LOC107570736,LOC107708193,LOC107670801,LOC107653186,LOC107717191 other downstream 686807 22371567 ~ 22448011 (-)
G95972 NA other downstream 711949 22420936 ~ 22422869 (-)
ypel5 ypel5,slc30a10,LOC107568027,LOC108441457,LOC103458748,LOC102788175,LOC102210471 other downstream 805526 22326705 ~ 22329292 (-)
si:ch211-130h14.4 LOC107660236 other upstream 293004 23429646 ~ 23444063 (-)
borcs7 borcs7,LOC107695248,LOC107585367,LOC107588662,LOC107716326 other upstream 1206107 24342749 ~ 24344657 (-)
fgf8a fgf8a,LOC107673879,LOC107585369,LOC107696243,LOC107588741,LOC107716294 other upstream 1262481 24399123 ~ 24404715 (-)

Expression


Co-expression Network