LOC122356333 (LOC107601782,LOC107666363,LOC107725459,LOC107563040)


Basic Information

Item Value
gene id LOC122356333
gene name LOC107601782,LOC107666363,LOC107725459,LOC107563040
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8436620 ~ 8479074 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254900.1
ACTCGCTGATATTGTGATGAGAGCGTGAGAGGCTCCATGCACGGGCGAGCGCGAGCGGCGTGCGGTGACCGTCACTGTTCAGCGTGCGGCGGCGTTATCAATACGGAAACCTGGACTGCTTCCTCAGAAAGGGCTCTCCAGCAGAGGGCACAGGGAAATTTGATGCAGCCCCTGCACGTTCACCCTGTCGGCGCACTGTATCTGCTGTGCGAGTAACCCCTTTGAGGATCATGAAGAGTTCCCCTGATCTCATGCCTACTGAGCTGGACCCTACCCGTGTTTGCAAGGGCAAGGGTGCTGTTACTTTGAGGGCCACATTAGTGCACATCGATGATGAGGACGGCACAAGCCAAGAGCCGTCCAAGAACTCTGCCAAAAGTGGATGGCTTGGTGCGGTCAATGGAGATGCCACAGAAACAAGTCTGGCTCAGAGAAGTGTAAACAACACCGGAGCTGATTTAAATTCAACTCAAGTCAATGAGACACCAACAAAGGTGGACTCACCTGTAAGAGAGAGTCGATCTCAGCTCACATCCTGCCTTGATCAGCCGAGTGCTATTACCTCATCAGCCAAAGTGTCCTCTTCATATCCCCCCACCAGCAGCGTCAACCCAACAATCGTCTTGCTGCAGCACAGCAGAGAAGCTGTGGCGGAGCAGGGCAGTGGCCCTAATCGGAGCCCTGCCGTCAACCAGAATAAATCTTCCTCTGAGACTCCGGCAGACATGGAAGGAAAGAGAATGAGACTGTCTGAACATTCAGCTGTCCCGGGACCCAGAGTCCCAGTACGGAACACAGAGCTATCAAAGGATTGGTACAGAAACATGTTCAAACAGATTCACAAAGTCCCAGAGCCTGTCGAAGAAAATCCATATCGTCCCACCTACATATTTCCAGAGAGCAATGACAGGCCACTGAAAACCAGAGATGACGGGCTGTCATATGGTGGTGAGGACGTGCGGGCCGTCCCTCGCTCCAAGAGTGCCGTAGACATGGGGAGCTCCAGAGGACAGCTGCCTGTGCCAACACGCACATCTTCCCTGAAACCTCAGAGGAATGAGTGGGAGCCCCCTGACAAGAAAGTAGACACCAGGAAGTACCGCGCCGAGCCCAAGAGCATATTTGAGTACGAGCCAGGAAAGTCTTCAGTGCTGAAGCTGGAGAGACCGACTCAGGACATAAGTCCAGAAGATGTAGATTTAGAGAATGAGCCTTGGTATAGGTTCTTTTCTGAGATGGAGTTTGGCAAAGCGCTGCATCACACTAAGAGTGCCCCCTCTTTCAGCCCCTTGGACACATCTTCCGACCTACAGCAATACTCAGCCTGTAAAGCAGGCAACGGTGAAGTGGAGAAGAAGGACAGCTTGTCTGCCGGTGGGCAGGCAGCTCCAGAATGTGATCGGCACATTTACAAGAGTGTCCTGGAGGGCGGCGACATCCCACTGCAGGGCCTGAGAGCGCTTAACAAGCGCCACCCTAGCACTTCTTCTAAAGTGGATTATAAAGGTGGGAATGGCTGTATGATTTCACCCTGCTCTTCTGTAAATACTCACTCAGTTCTTGCCACTAATGCACTAGCTTCTCAGTATAAGACTAAAAAGTCCTTGTCTGCTGCCAAAGCCTGCATCCCTCAAATACTTCCCTCAAAGTTTAAACCCAAGCTATCGCCATCTATCGATGAAAGCCTGGAAAGACGGATCGAGCCGACACAACAGCGGCCCAAAGCTCACAGCTGCGAGGATCTGCGTCACGAGGCTTGTGGCCCACGAGATGAAGATACGCCAGATGCCGATCACAGGTTAAATTCAGCTTGCAAGGGCAACCTGCAAAAAAATGGACCTGTTGTGAGATCTGTGAGGAGCACATCCGAGTTCTCCGCACTATATCGGAACATGCACAACATTCAGAGGCCGAGCTCCGTGGGCTCCAGCCCCCATGGTAGTGTCCGTTGCCTGGCTTCCTTTTTTGAGAAGCCGGGGGATGACATTACCTTGGAGAGGACTGAGATCGTCCCCCGGGATGCTGTCACGTTTCGGGTGATGGAGTTTGAGCGTATTATTCAGCGTTCGAACTCTGCGCCCACTCGCTCCGCCTCCATGCCCATACTCCCTAGTAACCCAAGTCCTCCCCACAGCCCTGCACCGACCTGCTTCCTCCAGTCTGCTCTGTCAGCTGAGACCCTTGTCATGCCAGGGCCTGAGGACTGTCCAGTCAGGATTACAGAGGCCCAGACCCCCAGAGAGGAAGCTTGTTTATCCGAGCAGTACCCAAACACCACAAGAACTGACTTGCCTTTGGATCTAAATGAACCGGAAGAGAAAAACAGTTGCAGTCATGATCCTGCCAAAGAGACACCCACAGAACACACAGGTCACCATCACCACGATCACTTTCCCTTCCACACCAAACAAAGCAAGTGTAAAGGCACCTGCCCGGCTTCCTATACACGTTTCACCACAATCCTCAGGCACGAGCGCCAACAAGCCAACACCCAGCAGGAGAAGAAATGCACTCCTCCCAGGAACTTGCTTCTGATGGGACCAGCACCTTTCTCTTTACGCAGGTCCCTACACAGTCAACAGGCCAAAAAGACTTGCGCTCTCTCTGCCATGAAGCCTGTGACCGGAGATGTCATCTCGGCCAAGCTGAAGCCTTTGATTCCCCAGCGCCTGTCCTCTTTGGAGGTGCTGGAGAGGCTCAGTAATGGAGACAGCTCTCCCTGTGAGGGGTGCAACTCAGATGACCTCATGGATGTGGAGGGCTCAGAAGCCAGTAAAGATCACTCTGAAGAATCTGATTCCTCACATCCATTAAGCCAAGGAGATCATGGAGAAAACTCAGACGAGGCAGTCCGGAAACGTTATGGAGATAAAGAGaaaattctGGAGGAGCAGAGACGGTTAAAGCGAGAGCAGGAAGAGGCAGATACAGCTGCTCGGAGACATGCTGGGCTGGTTGTGACTCATCAACAGTTCATTACTAATGACCGCTTCGGCGACCTGCTGGTTATTaatgagaaagagaagagaaaagccATAGAGAGGACTCCTGCTTTGGCTCGATTTGACTTCAGAGCAGAAAGTTTAAAGGAACTACCATTTCAAAAGGGAGATATTGTATACATCTACAGGCAGGTTGATCAGAACTGGTTTGAGGGAGAGCATCATGGTAGAGTCGGGATTTTTCCACGTAGCTACGTTGAGATCTTGCCCCCTACAGAAAAGGCTCAGCCAAAAAGTGCTCCGGTCCAGGTGTTGGAGTATGGAGAGGCTATTGCTCGATTCAATTTTACTGGTGACACCGCTGTTGAAATGTCTTTCAGAAAGGGGGAGCGTATCACGCTGATACGCAGAGTAGATGAGAACTGGTATGAAGGCAAAATTTCTGGCACTAACCGGCAGGGCATCTTCCCAGTCACCTACATAGAGGTGCACAAGAGACCCCGAGTGAAAAATGGAGTGGACTACCCTGATCCCCCTATCAGCCAGTCACCTCACCGGAGCACTAATGCCTCTCCACAGCCCATTCGTAATCGGCTGACCACCTCCCCTCTCCCTCTGCCGCGGTCTCCCCGCCGCTCGATCTCCCCCGAAGTCCACGCCATCTCTAACGAGTGGATTTCGCTCACTGTGGGTGGAGTCAGCAGCAGCCCCCCGGCTGCACCCACCCCACCCCTCCCTCCTCTGCCAAGCACTTCCTACCGCTTGGGCGAATATCTGCCCCCTTCCATGTCCGCCAGTCCCATGCCTCCCATCAGCAACAGCCCCTACTGCGTTTCCCCCATGGCTTCTCCCTCCACATCTCCTTTACCCCCGCCCTATCCTCCCCGGCCCTGCTCGGCCACCCCGTTTCTCACCTTCACTCCACCTCAAGGTGAGGACTTCCTTCTTTCTCCACCCTCTCCCCGCCTGTCCCGCAGCCTGAGTCCCTGTGGGGGTGCTGGGCTTGAGGGTTGGCTCAGTGGGGGCAACAGGCTGGATCAGGATTTTCAGGAAGGGGATGGGGCTGAAATAGACAGGGCTGGCAGCCTCCGCAGGGCTCCTTACAGCAGGAACAATAGTCCAGCAGAGcCATTAAGAAATGATGTAGAATATTACGGGCGATCTTCAAGAAGTCCTGTCATGCTGTTTGACATTCAAGACAACAACATGAATGCCAATTCATTCACGGAGGCAGTGTGTAATGAGATCATGAATATTGCAGAGACCTCAGTGAGGTACTGCAGCACTTTGTCACGCCCTATAGACTCCGCCCACCGACTCCTGCCTCCTCCCAGTAAACACTCTCTCATCATTTCCCAGCAACCCCTGTCCCAGAGCAGCAGTCCTGAGCCTGGACGCATGAGCTGTGGGATATTTCAGGCTCTGTATAATTACATGCCTCAGAATGATGACGAGTTGGAGCTGCAGGAAGGAGACCTGGTCAGTGTCATGGAGAAATGTGATGATGGCTGGTTTGTGGGTACATCCAAGAGGACAAAACAGTTTGGCACTTTCCCAGGAAATTATGTAAAAGCTGTTAATTTGTGACACGATGCTTTGAAAGAAGTGACGGTTTGTATGCAGCGATTCTAACACTATGCTTAAGCAGCCCGATGCTTTTGGGACACTCTACCTGTTGACGTCAAATGAAGACTTTTTGTCCCCTGCAAAATTCGGTCTTTCCCAGATGAATGTCCAGGTATGTGATCAATAAGGTGTGCGGCATGTCAGAGAAGAACATGCGGTTCAACTGTACTACAGTGGCAGCATTTGTTGAAGGATTTAGAAGAATacgttgtttttgcttttttttttttttttgaaatgctcAGACTCCGCTAAAAAGCCATTAATATGAAGTATATATCAGACTTGGAAAAGGTGTATAAGTTTACAGCTGCGAATTGTACTGAAGTACAACTTCATCACATACCTGACATTACTGAAAATGCGTGAAATTCTAcgatttatttttgctataaaaGTTTGATGGGCTTTGAGAGTGACCGTGAGGGATGACAGTGTATCGAAAGCACCCGAAGGTGTCCGTATTAAGGGTCGCAGGTCAGGCAAGCTGTGAAAGGATCATAGTTAGGTTTAGCCATtttgaaaagtgtttaaattacaatttacacTCCCACTGTGTAAAAATTGCGTATTTgtggagctttttttttttatcatcatacTTTCATAAAGAGTATGATGTAAATTTCTTGTCCGATGAGGGCTCAAAGGATGAGACGACAACATTAGTATTTGCGAATTCAAGCAAAGCTATTTGTAGACATCAAAATGATGTAAATCAGTGTTGGTCATGTTAAGGAGGACAACGTCACAGCACTTACTGTACTCTCAGATTATACTGACATGCAAAATTACGGTAACGCTTTACAGTAAGCTCTGATTTGTTAACATTCGGATGAGAAAAGAGTACGGGTGCAACTGTGTGCTCTCAACGTAGagaaaagtgctatataaatgtgactaattattattattattatttattttaatgaattagttAACGTGAACTAACTATGTGCAGCTATtgttaacaaataaaaccttactgtaaaatgttaccaaatttCTCTTCGTAAAATTACGATGGAGTGACCGACTCTATAAACTCCAGATCTGATAAGCTTTTTAATTGGtaacaaaaacaatcaagctTTAAGCGTTATGTAATACAGTGAGGCGAAGGGCTACAACTAAACCCCCACTAAACACATGCTTTGCCTCAAAACATGCTATTTATTTGCCTGAGTAGTGCACATTCTGCTCTTCCAGTCATCCATTTTTTGAAATGGTTGTTCTGAAGAGCGCGTTACGAGTCTGAGGCACAGTATTTACCTCTCATAACAAGCCTTGATAACATCTTAACCCAGGTACCATTTGACAGCGACATTTACATAGTGTTATGACTGCTAATATGGTTGCATGTTGGGAAACGATTATCCGTATAAGATTGCTGTACCTCATTTTCAAAGTGCCATTCACAGTAGAGGATGCTACACGTGGACCGTTGCGTTCATTTAGTTAGGCAGTCTCCATTAATTAGCTTGTGGTCTTCCTTAACTGAATGTAGTTCACATCTACTCCAGGTTGCGGATTTGCTTTTGCTTCCTTTTTAAGAAGTAGAAGCGCAAATCTGAAGATATACGTGTTTGGATTTCTTCTTCAGATgaagttgtgtgtttttgaatctCCCCTTTAGTTTTATAAGGTCCATTCCGTACAACGCCAGAGAACGTGCTGCTAGAGAGCACGAGGGTCTTCTGGGACCCTTTTCGCTTACCAGCCTTCCGTCCCGATTCAAAACCAGGATTAGGAAAAGATCATCTGGACAGAAATCGACATctagattatatatttttccttttttttaaaccagtgGTCGTTGCTAAAACTTTTGTCAGGAAGAAATCACGCAGAAGATCAACAAGGAATTCACAAGCGTGCGTGATCTCTGTCGAGTGTGATGTTTTGGCCTTTTCGAACCGTTCTAAGATAGCGTAGCATATCTGAATGTAGTGCTCTGAGAAGCTTTTAACTTGGATTAGTTGAAATTCACAGTTTTCCTATTCTGTCAGAGttgtaaatatgtaaagtaAACATGAATGAAAGTGATGGAAGTTACAGCAACCTCTAtgaatattacagtttatattaaatgaagaaTATTAGGAAAGCACAGAGATTTGCGTAACACAGGCCGTCTCATACGACTGAACGAGTGATTCTGACACTGTGTTGGGATTGAAATGCCTTTCTGTCTCATGGCTTCATTGAACTGTGcctcgttttgttttattattattttttttttgccttgagGTAAACGCATTACTTTATAAGGACTTTTAAAAGTACGTTTTGCTGTGTCACAGGACACGGTTACTGAGTTTGTTACCGCAATCACATGAGTTGCTCAAAAGTGTGAGATGACACCTGAGatgtttaatgtataattattacttTGTGGTCTGTACGCAGAAGcgaattttgcattttttgtttgtttttgtttatttgcagtgCTGTTAATTACAATGAATTTAAAACACTATTTACTGCTGTGATTGCCTcattatgcaatatttaataaacaatattacagCTTT

Function

NR:

description
PREDICTED: sorbin and SH3 domain-containing protein 1-like, partial

GO: NA

KEGG:

id description
K06086 SORBS1, SH3D5, PONSIN, CAP; sorbin and SH3 domain containing protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254900.1 True 7111 mRNA 0.47 29 8436620 8479074

Neighbor

gene id symbol gene type direction distance location
pik3ap1 LOC107601836,LOC107725474,LOC107666502,LOC107563065,LOC107676601 coding upstream 696 8421947 ~ 8435924 (+)
tacr2 tacr2,LOC107725458,LOC107601831,LOC107743552,LOC107563044,LOC107666460 coding upstream 67832 8362997 ~ 8368788 (+)
hnrnph3 hnrnph3,LOC107563056,LOC107601829,LOC107725497,LOC108438202,LOC107666547 coding upstream 112413 8319498 ~ 8324207 (+)
dna2 LOC107601824,LOC107666538,LOC107725437,LOC107676588,LOC107563052,LOC107743557,LOC107601826 coding upstream 135875 8291171 ~ 8300745 (+)
nfkb2 LOC107725448,LOC107601822,LOC107666457,LOC107743559,LOC107563053,LOC107696896 coding upstream 180522 8238414 ~ 8256098 (+)
khdrbs2 khdrbs2,LOC107743545,LOC107666564,LOC107676606,LOC108443734 coding downstream 22385 8501459 ~ 8555403 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding downstream 165581 8644655 ~ 8647451 (+)
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding downstream 241954 8721028 ~ 8734958 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding downstream 300081 8779155 ~ 8782768 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding downstream 312082 8791156 ~ 8807527 (+)
G91863 LOC107725442,LOC107666570 non-coding upstream 22839 8409968 ~ 8413781 (+)
G91867 NA non-coding upstream 50236 8385868 ~ 8386384 (+)
G91855 NA non-coding upstream 89463 8343124 ~ 8347157 (+)
LOC122356687 NA non-coding upstream 97904 8336295 ~ 8338716 (+)
G91839 NA non-coding upstream 120208 8313114 ~ 8316412 (+)
G91944 NA non-coding downstream 369 8479443 ~ 8481992 (+)
G91991 NA non-coding downstream 106283 8585357 ~ 8586003 (+)
G91995 NA non-coding downstream 112134 8591208 ~ 8592654 (+)
G92034 phactr2,LOC107666519,LOC107601847 non-coding downstream 273393 8752467 ~ 8753884 (+)
G92036 phactr2,LOC107601847,LOC107666519 non-coding downstream 275645 8754719 ~ 8757847 (+)
G91833 slc37a1 other upstream 125796 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 549930 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 597675 7836180 ~ 7838945 (+)
sh2d4ba sh2d4ba,LOC107713884,LOC107666399,LOC107565924,LOC107743625,LOC107696870 other upstream 649313 7771560 ~ 7787307 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other upstream 1289402 7093144 ~ 7147218 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other downstream 187193 8666267 ~ 8683052 (+)
sf3b5 sf3b5,LOC107601807 other downstream 259962 8739036 ~ 8740095 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 546869 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 601774 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 682443 9161517 ~ 9164114 (+)

Expression


Co-expression Network