acta1b (act2,actc1a,LOC105907633,LOC107678759,LOC108430668)


Basic Information

Item Value
gene id acta1b
gene name act2,actc1a,LOC105907633,LOC107678759,LOC108430668
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8901550 ~ 8905011 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254970.1
GGTTGAAAGATGGGGAAAACTCCTACCGAACATACAGATATCCTCAATAGTGCGCATGGGGACAAACACGTAGAGTATATAAGGTTTTCGTGGCTCAGTCAGCCGTGACTGGATCCATCAGCGCTTGTGTCTTGCACTGAGCTTCATCACAGAAAGAATCCATCAAGATGTGTGACGACGACGAGACTACCGCCCTTGTGTGCGACAACGGTTCAGGCCTGGTGAAGGCCGGCTTTGCCGGTGATGACGCCCCCAGAGCTGTCTTCCCCTCCATCGTTGGTCGCCCCCGTCACCAGGGTGTCATGGTGGGTATGGGCCAGAAGGACTCATACGTAGGAGATGAAGCTCAGAGCAAGAGGGGTATCCTGACTTTGAAGTACCCCATCGAGCATGGCATCATTACCAACTGGGACGATATGGAGAAGATCTGGCACCACACCTTCTACAACGAGCTCCGCGTCGCCCCCGAGGAGCACCCAACCCTGCTCACCGAGGCCCCTCTTAACCCCAAGGCTAACCGTGAGAAGATGACCCAGATCATGTTTGAGACCTTCAATGTCCCAGCCATGTATGTGGCCATTCAGGCTGTGCTGTCCCTGTACGCTTCTGGCCGTACCACTGGTATTGTGCTGGACTCTGGTGATGGTGTGTCCCACAATGTCCCCATCTATGAGGGTTATGCTCTGCCCCATGCCATCATGCGTCTGGATCTGGCCGGTCGCGATCTGACCGACTACCTCATGAAGATCCTGACCGAGCGTGGTTATTCTTTCGTCACAACTGCTGAGCGTGAGATTGTCCGTGACATCAAGGAAAAGCTGTGCTATGTGGCTCTGGACTTTGAGAATGAGATGGCTACTGCcgcctcttcctcttccctggAGAAGAGCTACGAGTTGCCCGACGGCCAGGTCATCACCATTGGTAACGAGCGTTTCCGTTGCCCAGAGACCCTCTTCCAGCCATCTTTCATTGGTATGGAGTCCGCTGGAATCCATGAGACCGCCTACAACAGCATCATGAAGTGCGACATTGACATCAGGAAGGACCTGTATGCCAACAACGTCTTGTCAGGTGGTACCACCATGTACCCAGGTATTGCTGACCGTATGCAGAAGGAGATCACTGCTCTGGCCCCCAGCACAATGAAGATCAAGATCATTGCCCCACCTGAGCGTAAATACTCTGTATGGATCGGTGGCTCCATCCTGGCTTCCCTGTCCACCTTCCAGCAGATGTGGATCACCAAGCAGGAATACGATGAGGCAGGCCCCAGCATTGTCCACCGCAAGTGCTTCTAAATCCATCCTCTGCATCTATTTTGCTGTGGAATACGCAATAATGGAGAACACATTCATCGTTATGGGACAGCTTTGGTACAGATTTATTTTGTACCCATTTATCACTCGATGAACATACCCTGGATTATCACGCAGGAACACGAAGAGGCAGGCCCCAgtccaaacaaacacaatcaagATCCAGAAGACCATCATACCATGTTATCTATCACAAGACTGTATTCTGTACATAAAtagtcattaatttattaaagtcCATTATTTGGTATTTGGTTTTTGAACTCTGTTTGTGCTAATAAATTGTTTGACTTGAAACTGA

Function

symbol description
actc1a Acts upstream of or within atrioventricular canal development and endocardial cushion formation. Predicted to be part of dynactin complex. Is expressed in adaxial cell; brain; muscle; pericardial region; and trunk. Human ortholog(s) of this gene implicated in atrial heart septal defect 5; dilated cardiomyopathy; dilated cardiomyopathy 1R; and hypertrophic cardiomyopathy 11. Orthologous to human ACTC1 (actin alpha cardiac muscle 1).

NR:

description
actin, alpha skeletal muscle

GO:

id name namespace
GO:0036302 atrioventricular canal development biological_process
GO:0035050 embryonic heart tube development biological_process
GO:0003272 endocardial cushion formation biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K10354 ACTA1; actin, alpha skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254970.1 True 1620 mRNA 0.51 7 8901550 8905011

Neighbor

gene id symbol gene type direction distance location
abcb10 abcb10,LOC107666478,LOC107725469,LOC107601852,LOC107676605,LOC107743532,LOC107552914 coding upstream 1268 8892993 ~ 8900282 (+)
pgbd5 pgbd5,LOC107725485,LOC107552948,LOC107743535 coding upstream 94023 8791156 ~ 8807527 (+)
agt agt,LOC107666501,LOC107601848,LOC107725476,LOC107676582,LOC107552950,LOC107743538 coding upstream 118782 8779155 ~ 8782768 (+)
oprm1 oprm1,LOC107676562,LOC107601844,LOC107725432,LOC107743618,LOC107666379,LOC107552929 coding upstream 166592 8721028 ~ 8734958 (+)
il22ra2 LOC107666403,LOC107725447,LOC107601806,LOC107676596,LOC107552930,LOC107743540 coding upstream 254099 8644655 ~ 8647451 (+)
ccsapb LOC107725482,LOC107601854,LOC107666447,LOC107676587,LOC107552946,LOC107743530 coding downstream 875 8905886 ~ 8909793 (+)
pdcd2 pdcd2,LOC107725489,LOC107666434,LOC107601856,LOC107676576,LOC107743527,LOC107552926 coding downstream 35717 8940728 ~ 8942899 (+)
zgc:153169 zgc:153169,LOC107725444,LOC107666437,LOC107601788,LOC107552913 coding downstream 42739 8947750 ~ 8950582 (+)
rab1ab rab1a,LOC107676578,LOC107666439,LOC103035225,LOC107725478,LOC107601860,LOC105005759 coding downstream 45884 8950895 ~ 8956697 (+)
sertad2b sertad2,sertad2b,LOC107666512,LOC107676574,LOC107743523,LOC107725465 coding downstream 70078 8975089 ~ 9008344 (+)
G92066 NA non-coding upstream 4641 8836716 ~ 8896909 (+)
G92048 NA non-coding upstream 110498 8789731 ~ 8791052 (+)
G92047 NA non-coding upstream 112349 8788997 ~ 8789201 (+)
G92046 NA non-coding upstream 113701 8786988 ~ 8787849 (+)
G92045 NA non-coding upstream 114686 8786595 ~ 8786864 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding downstream 24431 8929442 ~ 8965589 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding downstream 145356 9050367 ~ 9097905 (+)
G92111 NA non-coding downstream 235206 9140217 ~ 9144511 (+)
G92147 NA non-coding downstream 359053 9264064 ~ 9275699 (+)
G92313 NA non-coding downstream 545435 9450446 ~ 9450689 (+)
sf3b5 sf3b5,LOC107601807 other upstream 161455 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 218498 8666267 ~ 8683052 (+)
G91833 slc37a1 other upstream 590726 8306486 ~ 8310824 (+)
zswim8 LOC107666425,LOC107565928,LOC107713895,LOC107743573 other upstream 1014860 7858698 ~ 7886690 (+)
chchd1 LOC107713887,LOC107565922,LOC107743624,LOC107696882,LOC107666381,LOC107555316 other upstream 1062605 7836180 ~ 7838945 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other downstream 120932 9025943 ~ 9027909 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other downstream 175837 9080848 ~ 9089121 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other downstream 256506 9161517 ~ 9164114 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 525167 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 1300102 10205113 ~ 10249725 (+)

Expression


Co-expression Network