rab4a (rab4a,LOC107601855,LOC107666448,LOC107676603)


Basic Information

Item Value
gene id rab4a
gene name rab4a,LOC107601855,LOC107666448,LOC107676603
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 8908815 ~ 8917062 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254972.1
cAACAGGAAGTAGCTGCTCCACAAGCTTCCGACTAGGATGCGCGAAACCCTCTAAGGGATTTCCCTTTATTTGATATCCTTGTTGATTTCcttgaaagagaaaaaacacagtATAAACAGGCTAGAAACACAGCGCCAGTCATGTCAGAGACATACGATTTCCTGTTTAAGTTTCTTGTGATCGGAAATGCAGGAACTGGAAAATCTTGtcttcttcatcagtttatAGAAAAAAGATTCAAAGATGACTCAAATCACACCATTGGGGTTGAATTTGGCTCGAAGATAATCAGCGTGGTCAATAAGTTTGTCAAGCTCCAGATCTGGGATACAGCAGGACAGGAGCGTTTCAGGTCTGTAACACGCAGTTATTACAGAGGGGCAGCAGGGGCTCTTCTCGTGTATGACATCACTAGTCGAGAAACATACAACGCTCTGACCAACTGGCTCACAGATGCCCGGATGTTGGCCAGTCAGAACATAGTGATCATATTGTGTGGAAACAAGAAAGATCTGGATGCTGACCGTGAAGTCACCTTTCTGGAGGCCTCACGCTTCGCTCAAGAGAATGAGCTAATGTTTTTGGAGACCAGTGCTCTAACGGGGGAGAATGTGGAGGAAGCTTTTGTCCAGTGTGCTCGGAAAATCCTAAATAAAATAGAGTCAGGCGAGCTGGACCCGGAGCGGATGGGTTCAGGAATCCAGTACGGAGATGCAGCGTTGCGGCAGCTGCGCTCTCCCAGACGGGCTCAAGCAGAGAGCGTGCAGGAGTGCGGCTGTTAACACAGATCCCAGACAGCTGTCCAACCAGGCAGGTTTTGTGAACACGAGGTGGAGGACATTAGTGGGGTTTGACGTATGGCTCATCGTGGTGGAGTGACTGTTTCCCTCACCTTACTTTTACTTCTGTTCTGACATGCCGAGGGACACCCCGTGCTCCAGAAAGCTCCAGAAAAATGTTTACTGTCCCCCTCGGCCCAGGGCAAGACATCTGTGGTACCCAAAACCCAGAGGGTAGCTGAAAGACCTGGCCCTTGCCCCCGAGAATACTGCACTGAGCCCCTGCCCCGTCTTTCCCTCTTCCGTATGTAGATGTTGTGTAGAGAAGAGTTTCTATTATCACCGTGGAGCATGTTTCATGCTTGAAGTACTACAACATATTCATAAATGactatatacagcatatatatagcTTAGGCATTCTGCATCGCTGCTCTGTGGCACGTGCCTGTAAATCTTATCAATGGAGTTTATCGTACATTATCTTGCTAGCAcgttgtttgcttttattttttttccatgtctaTTGTATTCTTTGGTTATGTTTTAGTAAAGGATGCTAGAGCATTTCATACATGACATTTATTCAAGAAggctttgtttttgtattataatttacaatcaaaataaaatatttaagggCCAGCGCGCAGTTACCTTCATATTGCACTGTAATACATTGTCAGTATGAACAAAATCAGTGTTACATGctctatattttttgttaagGCCTTTTTGTGTTGCGGTCCCATTTTTAGGAATCTGTTGaaattaaactgattttttttctcctttttgttttttcttttggagaaaatgtattttattatttttttctctacttGTGCCCTGTTCTTCTTACTCATTTTAAATGGACATATCTCAAATGAGCTTTCActgaaaatgaatgataaatCATTGTGGACCTTGCTTTAAATTGCTTGTCATTATGTCTTTATATCATGcttttatgtttgtaaaaatgggACAGATTTCCAATAGTCATATTTAACAGCGCACTAAATGGTAGTGggttattcatttttcattgtgtCTACATTTACATtggtctaaaaaaaataaaaataaataactaaatagaaaaaaaatctataaatttgTAGCACTGGTGTAAATACTTAGATTTAGTTAGTTCAAAACCGACCTAATCAAATGTACAATTTAGCTGCTGAATGTAATTTGAAAGTGTAAACTGCCTAGATGGCTTTCATCATGGAAACGCaacaatactttaaaaaaaaaaattagaggACAATTCATAAAAGTCAGTTAAAGTCAAGGAAGGGCATTGCCAGACATTTAAGTTGCTGCATGGATCTGACACATGTATGTGGTTTCTTATGTCCAGGAACAGCATTATGTAATAAGACGGCAATATAAAAATCTGTCTTGTACATTAGTGAGAACAGAGTTTCATGTTTTACTgcagcaacaaaataaaaaactatttttttttttagccacaATACAGTtatgaaaaatagttttatttttctttaactgACACAAATACTATCAGACCTTGTCCTTAAAAAAGGTGTTAATCTAAACACTTAAACTTTGAATACTTTTCAAAACTCTTTCCATAACAGACGGCGGAATGGATATTCATTCAATAATGCATCTCATATACATTATGGCTTCATTATTCTTACGCTAAAACCAACACTATTCACATAGTACATGCCATAAATCAATACGAAGATACCTGTACAGTTGTCAGAGATGCTGAACTAAAAATAGTCTGAATTAGTTCAATACCATTATATAAATAGTGTAAAAGCATCCCAATATCATCATTTctcaataaattacataaaatacaacaagAAATACCTGAGTGCTACTAAAAACCAAATAACATCACAATGAATGAGAGTTATTCTCGATGATGAACAGCTGCGATTGCTTTTGCTGTGTATGAAAATGATTTGTCATTTTGCTGAGTTTCATGCTTCAGTTAACAGTGACTTTTTACATTGTGTCACGATATTACTGTTCTGACACATTACCGTGGAGTTCACCATTAGTGtgaatatacaaataaaatataatacatctCATTTCAAAGAAAGCAGATATTAATAGAACAGATCAACTGCCAACGTGAGATTATTTGATCCATGCTGGCGGAAATGATTTCaagtacaaaacatttctttacattAAACCTAACTATTAACACAATGTAGATAATACACAACATTACAATACATCACGTTGTATGTCTATAATTGTCTGAGTTACTGAAAACTTTTAAAGAATTGGCTAAAATGTAAAGATAAAATGACCTATAAATCTATGTGACCTACAAAAACCATGCAGCAAGGCATGTGATTATTTGACGATTTGCCCTACAGCATCAATGGATTGTGCTTTCATGTTTGATATGTACCAGTAAATGCAACCTATCCATGATGTTAATAAACCCCTAAAAAACCTTGA
>XM_043254973.1
cAACAGGAAGTAGCTGCTCCACAAGCTTCCGACTAGGATGCGCGAAACCCTCTAAGGGATTTCCCTTTATTTGATATCCTTGTTGATTTCcttgaaagagaaaaaacacagtATAAACAGGCTAGAAACACAGCGCCAGTCATGTCAGAGACATACGATTTCCTGTTTAAGTTTCTTGTGATCGGAAATGCAGGAACTGGAAAATCTTGtcttcttcatcagtttatAGAAAAAAGATTCAAAGATGACTCAAATCACACCATTGGGGTTGAATTTGGCTCGAAGATAATCAGCGTGGTCAATAAGTTTGTCAAGCTCCAGATCTGGGATACAGCAGGACAGGAGCGTTTCAGGTCTGTAACACGCAGTTATTACAGAGGGGCAGCAGGGGCTCTTCTCGTGTATGACATCACTAGTCGAGAAACATACAACGCTCTGACCAACTGGCTCACAGATGCCCGGATGTTGGCCAGTCAGAACATAGTGATCATATTGTGTGGAAACAAGAAAGATCTGGATGCTGACCGTGAAGTCACCTTTCTGGAGGCCTCACGCTTCGCTCAAGAGAATGAGCTAATGTTTTTGGAGACCAGTGCTCTAACGGGGGAGAATGTGGAGGAAGCTTTTGTCCAGTGTGCTCGGAAAATCCTAAATAAAATAGAGTCAGGCGAGCTGGACCCGGAGCGGATGGGTTCAGGAATCCAGTACGGAGATGCAGCGTTGCGGCAGCTGCGCTCTCCCAGACGGGCTCAAGCAGAGAGCGTGCAGGAGTGCGGCTGTTAACACAGATCCCAGACAGCTGTCCAACCAGGTTTTGTGAACACGAGGTGGAGGACATTAGTGGGGTTTGACGTATGGCTCATCGTGGTGGAGTGACTGTTTCCCTCACCTTACTTTTACTTCTGTTCTGACATGCCGAGGGACACCCCGTGCTCCAGAAAGCTCCAGAAAAATGTTTACTGTCCCCCTCGGCCCAGGGCAAGACATCTGTGGTACCCAAAACCCAGAGGGTAGCTGAAAGACCTGGCCCTTGCCCCCGAGAATACTGCACTGAGCCCCTGCCCCGTCTTTCCCTCTTCCGTATGTAGATGTTGTGTAGAGAAGAGTTTCTATTATCACCGTGGAGCATGTTTCATGCTTGAAGTACTACAACATATTCATAAATGactatatacagcatatatatagcTTAGGCATTCTGCATCGCTGCTCTGTGGCACGTGCCTGTAAATCTTATCAATGGAGTTTATCGTACATTATCTTGCTAGCAcgttgtttgcttttattttttttccatgtctaTTGTATTCTTTGGTTATGTTTTAGTAAAGGATGCTAGAGCATTTCATACATGACATTTATTCAAGAAggctttgtttttgtattataatttacaatcaaaataaaatatttaagggCCAGCGCGCAGTTACCTTCATATTGCACTGTAATACATTGTCAGTATGAACAAAATCAGTGTTACATGctctatattttttgttaagGCCTTTTTGTGTTGCGGTCCCATTTTTAGGAATCTGTTGaaattaaactgattttttttctcctttttgttttttcttttggagaaaatgtattttattatttttttctctacttGTGCCCTGTTCTTCTTACTCATTTTAAATGGACATATCTCAAATGAGCTTTCActgaaaatgaatgataaatCATTGTGGACCTTGCTTTAAATTGCTTGTCATTATGTCTTTATATCATGcttttatgtttgtaaaaatgggACAGATTTCCAATAGTCATATTTAACAGCGCACTAAATGGTAGTGggttattcatttttcattgtgtCTACATTTACATtggtctaaaaaaaataaaaataaataactaaatagaaaaaaaatctataaatttgTAGCACTGGTGTAAATACTTAGATTTAGTTAGTTCAAAACCGACCTAATCAAATGTACAATTTAGCTGCTGAATGTAATTTGAAAGTGTAAACTGCCTAGATGGCTTTCATCATGGAAACGCaacaatactttaaaaaaaaaaattagaggACAATTCATAAAAGTCAGTTAAAGTCAAGGAAGGGCATTGCCAGACATTTAAGTTGCTGCATGGATCTGACACATGTATGTGGTTTCTTATGTCCAGGAACAGCATTATGTAATAAGACGGCAATATAAAAATCTGTCTTGTACATTAGTGAGAACAGAGTTTCATGTTTTACTgcagcaacaaaataaaaaactatttttttttttagccacaATACAGTtatgaaaaatagttttatttttctttaactgACACAAATACTATCAGACCTTGTCCTTAAAAAAGGTGTTAATCTAAACACTTAAACTTTGAATACTTTTCAAAACTCTTTCCATAACAGACGGCGGAATGGATATTCATTCAATAATGCATCTCATATACATTATGGCTTCATTATTCTTACGCTAAAACCAACACTATTCACATAGTACATGCCATAAATCAATACGAAGATACCTGTACAGTTGTCAGAGATGCTGAACTAAAAATAGTCTGAATTAGTTCAATACCATTATATAAATAGTGTAAAAGCATCCCAATATCATCATTTctcaataaattacataaaatacaacaagAAATACCTGAGTGCTACTAAAAACCAAATAACATCACAATGAATGAGAGTTATTCTCGATGATGAACAGCTGCGATTGCTTTTGCTGTGTATGAAAATGATTTGTCATTTTGCTGAGTTTCATGCTTCAGTTAACAGTGACTTTTTACATTGTGTCACGATATTACTGTTCTGACACATTACCGTGGAGTTCACCATTAGTGtgaatatacaaataaaatataatacatctCATTTCAAAGAAAGCAGATATTAATAGAACAGATCAACTGCCAACGTGAGATTATTTGATCCATGCTGGCGGAAATGATTTCaagtacaaaacatttctttacattAAACCTAACTATTAACACAATGTAGATAATACACAACATTACAATACATCACGTTGTATGTCTATAATTGTCTGAGTTACTGAAAACTTTTAAAGAATTGGCTAAAATGTAAAGATAAAATGACCTATAAATCTATGTGACCTACAAAAACCATGCAGCAAGGCATGTGATTATTTGACGATTTGCCCTACAGCATCAATGGATTGTGCTTTCATGTTTGATATGTACCAGTAAATGCAACCTATCCATGATGTTAATAAACCCCTAAAAAACCTTGA

Function

symbol description
rab4a Predicted to enable GTP binding activity and GTPase activity. Acts upstream of or within vasculature development. Predicted to be located in plasma membrane. Predicted to be active in endosome and insulin-responsive compartment. Is expressed in retina. Orthologous to human RAB4A (RAB4A, member RAS oncogene family).

NR:

description
PREDICTED: ras-related protein Rab-4A

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005886 plasma membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07879 RAB4A, RAB4; Ras-related protein Rab-4A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254972.1 True 3246 mRNA 0.37 8 8908815 8917062
XM_043254973.1 False 3242 mRNA 0.37 8 8908815 8917062

Neighbor

gene id symbol gene type direction distance location
urb2 urb2,LOC107725468,LOC107666477,LOC107552917 coding downstream 16010 8878521 ~ 8892805 (-)
galnt2 galnt2,LOC107743534,LOC107725470,LOC107666462,LOC107676591 coding downstream 34814 8809451 ~ 8874001 (-)
cog2 cog2,LOC107601846,LOC107725477,LOC107666500,LOC107743537,LOC107676580,LOC107552949 coding downstream 117946 8782998 ~ 8790869 (-)
phactr2 phactr2,LOC107666519,LOC107601847,LOC107552951,LOC107743595,LOC107676579 coding downstream 130250 8744844 ~ 8778565 (-)
rgs17 rgs17,LOC107552952,LOC107743539,LOC107666476,LOC107676609,LOC107601843,LOC107725462 coding downstream 207690 8683957 ~ 8701125 (-)
rhoua rhoua,LOC107601857,LOC107676561,LOC107666438,LOC107725498,LOC107743528,LOC107552943 coding upstream 15902 8932964 ~ 8939928 (-)
LOC122356963 tbp,LOC107725488,LOC107666436,LOC107601858,LOC107676577,LOC107552942 coding upstream 26373 8943435 ~ 8947042 (-)
cep68 LOC107725463,LOC107666566,LOC107601859,LOC107743522,LOC107676572,LOC107552940 coding upstream 40211 8957273 ~ 8963623 (-)
slc1a4 slc1a4,LOC107725464,LOC107552941 coding upstream 47086 8964148 ~ 8972341 (-)
si:ch211-217g15.3 LOC107676570,LOC107743520,LOC107725431 coding upstream 111289 9028351 ~ 9029769 (-)
G92205 pgbd5,LOC107601786,LOC107725485,LOC107552948,LOC107743535 non-coding downstream 105409 8796871 ~ 8803406 (-)
G92195 sf3b5,LOC107601807 non-coding downstream 168726 8738975 ~ 8740089 (-)
G92021 pcnxl2,LOC107725461,LOC107601842,LOC107666362,LOC107743596,LOC107676602 non-coding downstream 230429 8667496 ~ 8678386 (-)
G92235 NA non-coding upstream 58023 8975085 ~ 8975334 (-)
G92251 echs1,LOC107743519,LOC107725439,LOC107601864,LOC107676592,LOC107666378 non-coding upstream 104748 9021810 ~ 9022207 (-)
G92263 NA non-coding upstream 191008 9108070 ~ 9108361 (-)
G92264 NA non-coding upstream 195233 9112295 ~ 9112589 (-)
G92265 NA non-coding upstream 195845 9112907 ~ 9113298 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 860914 8043565 ~ 8047901 (-)
si:dkey-191g9.7 LOC107666390,LOC107713886,LOC107743576,LOC107696878,LOC107555321 other downstream 1092436 7809849 ~ 7816379 (-)
lrpprc lrpprc,LOC107747535,LOC107698749,LOC107666369,LOC107585278,LOC107733673,LOC107587880 other downstream 2409242 6453531 ~ 6499573 (-)
sdccag8 LOC107733766,LOC107587841,LOC107585251,LOC107747587,LOC107747538,LOC107698724 other downstream 2512389 6358201 ~ 6396426 (-)
LOC122356805 LOC107666373,LOC107587882 other downstream 2681543 6220175 ~ 6227272 (-)
G92267 NA other upstream 198031 9115093 ~ 9115551 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other upstream 1257351 10174413 ~ 10191766 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other upstream 1715188 10632250 ~ 10634566 (-)
G92819 NA other upstream 2007882 10924944 ~ 10935331 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 2283490 11200552 ~ 11218985 (-)

Expression


Co-expression Network