rdh12 (rdh12,rdh11,LOC107705384,LOC107585486,LOC107588583,LOC107724212,LOC107675518,LOC108439707)


Basic Information

Item Value
gene id rdh12
gene name rdh12,rdh11,LOC107705384,LOC107585486,LOC107588583,LOC107724212,LOC107675518,LOC108439707
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 12294205 ~ 12298725 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043254990.1
ATGCGAGTGGGAGGCTGAACACATTCACACCGACAGATACAGACAGGAGCAAAGCAGGCAGTTTCATAATGCTTATGCTCGTGGTTATTACGGCTGGTTTAGGGGTGGTCGCGCTGATTTTAAGGTTGTTTTCTCCTCAAATCAGAAAATATGCAGCAGGAGGAGGGTGTCGATCCACAGCCCGGTTAGATGGAAAAGTTGCTTTGATCACAGGAGCAAACTCGGGAATCGGGAAGGAAACAGCTTTGGATTTGGCCTCTCGAGGTGCGCGTGTGATCCTGGCGTGTCGTGATGTGGAGAAAGGCGAAGAGGCGGCGACAGAGATCCGTACACGAGTGGGTGGAGCTAAAGTGGAggtgagagagctggacctggcTGACATCTGCTCCATCAGAGCCTTTGCTCAGAGATTCCTGCGAGagGTTGATCACCTGCACATACTCATCAATAATGCTGGTATCATGATGTGTCCTTACATGAAGACAGTCGATGGCTTTGAGATGCATATAGGGGTCAATCATTTGGGCCACTTTCTGCTCACAAACCTCCTCATTGGTCTGCTAAAGCGTAGCGCTCCTTCGCGAGTCGTGGTGGTGTCTTCACTGGCACATAATTTCGGTTGGATTCGATTCCATGACTTGCACAGCCAGGGCAGCTACAACAGCGGGCTTGCTTACTGCCAGAGCAAGCTTGCTAACGTGCTTTTCACACGCGAGCTAGCGCGCCGGCTCCACGGGTCAAACGTGACAGTGAACTCCGTGCACCCGGGAACGGTGAGGTCCGAGCTGGTGCGTCACTCTACTGCGATGTCGCTGCTGTTCGCCGTCTTCTCCATGTTCCTGAAGACCCCGAAGGAAGGAGCTCAGACGTCTGTCTACTGCGCCGTCGCCGAGGAGATCCAGTCAATCTCAGGCAAACATTTCAGTGATTGTGCCCCTGCTTTCGTGGCTCCTCAGGGACGTAATGAGGAAACGGCACGGAAACTGTGGGATGTAAGCTGTGAATTACTTGGGATTGAGTGGGACTGAAACATTAATTTGACCTGCttttttctcgttttttttCCACCCTTCCATATTTTCAGTAATTAGACTTCTTTTGTCTTATTTGGTTTTAATACACTTGTGTACATTTTCTCAATTTCATGCTAGCACAACCAACCTTGTTCTTTCTGACAGTTTTCTTCTATCATGCCCTTGTGACATGCATTAGTTTCTTTTGACTCTAGAACAAATCTGTGAAGAATTTTAAATTCactgttttattctgtttgtatTTTGAACGCTGCTTTAACTCCCATCTCAGTATTGTCACATGAAGCTGCATATTTGAAGTCTTTTATACAGATGTGCTTTTAACTACTGTGGTACATACATGACCAgagatgaatatttaaataaatacagtaaaaaaaaaaaaa

Function

symbol description
rdh12 Is expressed in several structures, including brain; eye; gut; heart; and skeletal muscle cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis 13 and Leber hereditary optic neuropathy. Orthologous to human RDH11 (retinol dehydrogenase 11) and RDH12 (retinol dehydrogenase 12).
rdh11 Enables NADP-retinol dehydrogenase activity. Involved in cellular detoxification of aldehyde and retinoid metabolic process. Acts upstream of or within retinal metabolic process. Located in endoplasmic reticulum membrane.

NR:

description
PREDICTED: retinol dehydrogenase 12

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11152 RDH11; retinol dehydrogenase 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043254990.1 True 1420 mRNA 0.47 7 12294205 12298725

Neighbor

gene id symbol gene type direction distance location
arg2 arg2,LOC107675544 coding upstream 9160 12278556 ~ 12285045 (+)
slc66a3 pqlc3,LOC107706924,LOC107681540,LOC107675554,LOC107757120 coding upstream 110940 12180247 ~ 12183265 (+)
sobpa sobpa,LOC107706905,LOC107681548,LOC107757118,LOC107585480,LOC107588585,LOC107675556 coding upstream 121862 12144638 ~ 12172343 (+)
mtres1 LOC107706999,LOC107757125,LOC107588589,LOC107681546,LOC107675559,LOC107585479 coding upstream 189539 12101973 ~ 12104666 (+)
rdh14a rdh14a,rdh14,LOC107757127,LOC107675576,LOC107585474,LOC107668816 coding upstream 262309 12029451 ~ 12031896 (+)
si:ch211-10a23.2 si:ch211-10a23.2,LOC107654931,LOC107724523,LOC107675536,LOC107588580,LOC107585488 coding downstream 25319 12324044 ~ 12327519 (+)
ndufaf1 ndufaf1,LOC107655011,LOC107705394,LOC107588570 coding downstream 93034 12391759 ~ 12395946 (+)
oip5 oip5,LOC107655012,LOC107705396,LOC107588571 coding downstream 100939 12399664 ~ 12401608 (+)
tmem39b tmem39b,LOC107675583,LOC107705392,LOC107655009,LOC107585496 coding downstream 108186 12406911 ~ 12414269 (+)
ccdc28b ccdc28b,LOC107675524,LOC107585497,LOC107705395,LOC107588714,LOC107654929 coding downstream 116143 12414868 ~ 12420469 (+)
G93200 NA non-coding upstream 27139 12202742 ~ 12267066 (+)
G93190 rock2,LOC107588686,LOC107681539,LOC107707968 non-coding upstream 105167 12186068 ~ 12189038 (+)
G93191 NA non-coding upstream 109405 12180869 ~ 12184800 (+)
G93182 NA non-coding upstream 115739 12121939 ~ 12178466 (+)
G93169 LOC107588588,LOC107706947,LOC107681544,LOC107757121 non-coding upstream 186721 12104733 ~ 12107484 (+)
G93222 NA non-coding downstream 64340 12363065 ~ 12374131 (+)
G93219 NA non-coding downstream 80984 12379709 ~ 12380851 (+)
G93267 NA non-coding downstream 86582 12385307 ~ 12385618 (+)
G93280 NA non-coding downstream 149649 12448374 ~ 12450446 (+)
G93295 NA non-coding downstream 269759 12568484 ~ 12569100 (+)
G92977 dhrs7,LOC107588602,LOC107548599,LOC107757139 other upstream 689353 11603697 ~ 11604852 (+)
lrrc9 lrrc9,LOC107707153,LOC107588606,LOC107668786,LOC107757140,LOC107668789,LOC107708221,LOC107588691,LOC107673872,LOC107757098 other upstream 701605 11571660 ~ 11592600 (+)
arhgap22 arhgap22,LOC107668831,LOC107708000,LOC107673870,LOC107588697,LOC108443345 other upstream 880690 11389385 ~ 11413515 (+)
cxcl12a cxcl12a,LOC107588617,LOC107707253,LOC107548639,LOC107673912,LOC107757152 other upstream 1031585 11255594 ~ 11262620 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other upstream 1076030 11213526 ~ 11218175 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other downstream 133194 12431919 ~ 12436643 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other downstream 203660 12502385 ~ 12535071 (+)
G93296 rrbp1 other downstream 272906 12571631 ~ 12575212 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other downstream 288161 12586886 ~ 12588998 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other downstream 835748 13134473 ~ 13158440 (+)

Expression


Co-expression Network