zcchc24 (zcchc24,LOC107564348,LOC106577169)


Basic Information

Item Value
gene id zcchc24
gene name zcchc24,LOC107564348,LOC106577169
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 11153591 ~ 11185986 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255007.1
TCTTTGCAGTTACAGTGCAAATAAAGCGAGATAACGGGCCGTGGACAGCGGGCTAAAACTTTTTATTCTGACATATCAGAGCAATGACTTTTGTGTAATTATAAACCTGGGACACGGATCCCAGCGAAGGAATAGGGTCTGTGctggaaggagagagagaagcgCTGATTTTTTTTGGGTGTGGAAAACCGGACGGCGCGTTCACAGTACAATCTGAACAAGTTTGCCTTTTCCAAAAGTAACAGTGGAAGAGTGAAAGTTACAGTAACAACATGAGCTTGTTGTCTGCTATAGACACCAGTACCTCAGTGTACCAGCCTGCACAGCTTCTCAACTGGGTTTACCTTTCTTTACAAGACACGCATCAGACGAGTGCCTTCGATGCCTTCCGACCCGAACCCAACTCTTCCCATCCGGACCTGAACTACAGCAAAACTCCTGCCAACGACCTGAGCTCCTCTCTCAACTCCAACTATCTCAACAACTTCTTTCAGCTGCAGAGGAATGAGgCCCTGAATAATGGTTTATACAAAAGTGTGTCACCGTACGGCTCTCTTAACAACATAGTGGATGGGCTGAACTCTCTAACGGACCACTTCTCTgacctctctctgtcttctgaGCCACGCAAGCCCAGCAAGAGACCCCCACCAAACTACCTGTGCCATCTCTGCTTCAACAAGGGACACTATATCAAAGACTGCCCGCAGGCAAGACCCAAAGGTGAAGGACTGACTCCATACCAAGGAAAGAAGAGGTGCTTTGGTGAATACAAGTGTCCTAAGTGCAAAAGGAAGTGGATGAGTGGGAACTCCTGGGCCAACATGGGACAGGAATGCATCAAATGCCATATCAATGTTTATCCTCATAAACAGCGTCCTTTAGAGAAACCCGACGGCCTGGACGTTTCGGACCAGAGCAAGGAACACCCGCAGCATCTGTGTGAGAAGTGCAAAGTCCTGGGCTACTACTGCCGCCGCGTGCAATAAGGAGGATCCTGAGGTCGTCTCCACCCTTTCCCATCGCTTCGCCTACCAAGCGCTCcaagaaaaagtgaaaagtgcCAAAACATTCATGTAAATATCTCTAACGCTAGTTACGGCTTTGTGTATCAGCAGCATGCGACGCATTTATTGTGTATAATGGACATTTGAATATGTTTGGGACAGTGTTTCTATCCGTACGGGACGCAGTGGATTACCTCACCACTGCGTCCCCTGATTGTGTGTTTACAGACTCTCCCTTCATTCTCCCTGCCAAGTGAACTATGAGGATGTGCCGAGCACTAAAGGTGTCACGTTAGTTTGCTCAAACAAGGGCCCAGTGTGCCTTTGCAGAGTTTTTGGGTCAATAGCACATCATATTAACTGTGAATTAACAGAGGGACAATGGACTTTCCATCCCTAGCTTTTGtgtcacatatttatttatgtttgtgtatcGTTTCGTAGTGCAATTGAATTAACTAAACTGGGATAATTTCATCCGTGTTTATATCTGGACAGGTATTGTCTAACCCCACCTCTTGCCATTAGAAACTACTGTAGAATAGAACTTTCTAATGCTTCGGATTAGCCCATCAGGTAGTTTATGTCTTTCACTTATGTATGAATTGCCAAATGCgagatgtttttttgtcaagTTGGTTAAATGCAGCCCTGGAGGCATTTGAATCGAGTTGTTGGCAACTATGCAAAACCATTGCAGCTTATGCAGAGTCAGTTCTTTACATTGTTGCGCAGTGGAATGAAGTGTGTGGATGATCAAAACGAAGCCGTGGCTAGCTGACCGTCACCGTCCTTTGAAATGTGATTACGTATGTTGTCAACTGATGCCAGAGAACTGCTTCAAACGTCTTAGAATCCCATGTAAAGCTGAAGTATTTTGGTACAGGGGTCAAAATGTGAGCTTTTCAGTCCATGTgctagcatttaaaaaaacataacgcCTGCTCTTCGCTGAGATATCTAGCTCAGGATAAAGAGTGTGTTTGAATGACACATCTCAGATGAAACCATGCGCATCTGTCTTATATAAACACCGCTCtagaaaatgtcattaattcatttcaatgttatgcaacacatttattttaacattttaaaatgatacgaAAGGGTTATCCCTCCACAGCAATGTCatagaagaagaaataattatttttacgaCCTAAAGAACCATAAAGAAACCTTTTGTGCAATGAAAAGGTTCTAGGGATGTTTAATGGAACCATGGATGCATaaataacctttattttgaagaatgttttgaGTTTGACCCTTGCACTAAAAtatgtttcattaaataaattctcCGCTGTTTACACAGTCATTCTGATCATATCTCAGAATGAAATACTTAATTTTTACGGTTTTTATCGCCTTACCCCACATGCGTATATTTATGCATTGGCTACAGATGTACCTGATGAATTACACCCTGTTTAAACTGTGATTTTTGGGAAGCATTTTCTGTTTGATAGGACAAATATATGGCTGTAAAGGGAAAAGAAGGACAAAGTAAGTAATGCTGAAGAGTTTTTTTGGAGATGTAACGAGAAAACACTTTGGGTACATTTGATTGAAGATGTTTGATTGAGGACATTATGATGGGAGGGTGTTAATATTTGGATGGAAGTAAATGTGTACAGGATCTATGTGCCTTTACCTCTTGTTATGGCTCACACAAAGTACTAATTGATCGTATTTGAGTGTGGCCCAggattattaaacaataaatgtagctttacgTGTTCCAGTGGGAAGTCGTAGACGGATATTGTGAGAATTGTGTCAATCCTAGATGTACATATGAAGTTAAATGCTTTTACATGGTAAATACAGTGTGTATAATTGTTTACTTATCGTTGGAGTCCACATATTATCTGTTGAATATTAGTTCATGTTTCATTCATTGAGATAAAGTCAGATGAAGATACGAATCTTGTCTGAAGGGAACTTCTAGTGCCTTATGAAAAGTCCAGATTTTTGCCAAGGAATGTCATGTATGATGCCGAGGAATTGAAGGAGCCGATTAGATGTCTGAAAATGTAAACTAGCTAATTTTACTTCAGTTGAAAAAATGGCTTTATGTTTCTGATGGGAAATTAAAGGAGTACAAACTGCCAGGGAGTCAATCGTTAGATCACcgttaaataaaaagcaaggcTGTTTCTGCGAGTCGCTGCTTTGTTCTTTGGACGTCATCATTGTTTCTGAGACCCTTTATTTCTTGGTAACTGTGTTTTTCTGGTGTTGCCAATGGCTTCGCTGTGTGTACATTCTTACACGCCAAGGTTTACTTCAGGCCTCATTTAGGCTGGAATGAGTTACTCTGCTTTTTGATAAACACCGTAATGAATGGCGTAATGAACATAACCAGTGAAATAAACGATTACTGCGGATTCATCATAATCATTGCTGATCACCCATAGCCGGTAGTCTGCACATAATGATTTCCTTGCGTCTTTGGGATCAATTCAATTTATTGTCAGGTCTGTACACTTTAACAGATGACCCAGTGCACCACTAGATTGAGGCCTCGTTAttaaaattgctttatttttgcaaaatagtTACATTGCACTATATACGTGACTAAAATGATAACAGCCCTTGTTGAAGGCATGTATTGCGTAAATGAGCTTCCCCTGATTTCtgctttattaaatgaaagaCAGAGCTTGTGGTTTTGACAGAgtgtacatgcatttaaaactatACAAAGTGCTTTTTGCGCATGTTTTTGTCTTGAAATACATATACTTGACTTTTATAGCTCACTTTCAGTATAAACttgttattttctattaaagatATGTGTATTTTGGAAACAATATAGATAATGAAGATTTTGGAGCAATTTGATATCCAGACAAGATTTTGATGTTTTCCCTTACAAAGATACTAGTATGTGTTTTCTGTATATATTCGATTACCATCATTATCAAGTTAGCTATTTCGAAATGTTATGATGCAATATTAAAACTTTGTATGTGAAAAAAGGGCAAAATGCTGAGATGCAAAAGAGCTGggagtttgttttttcttcctttgaTGTTTTACAATAATCTTTGATTATATCCTACAGAAATATTTATGGAaggattttgttcttttttttaacaattcaattatttttttgtataaaatatgcaACAGAAGCTACTCTATGAAGAAAATATTGATGACTACATAGAATATTATTCAAAAGTTGGTACATAATTATTATGCCCTtacaagccatttttttttctgttttgttattCTAGATGTTATTGGTATATAGTAACCTTACCTGTTACGAGCATCCGTGTgcttcagtgttgttttgaatCTTTGCGTGTCTTGCTATACAGCATGAATGTTTTGATTTGCATTATAGGAAACCTATAACACTCATTCTAACATCACAAACAGCTGTTTTTCACATAACAGAGACTGACTCGCACACTGTAAGTCGTAGGTGTTTTATAGACGCAAAacagtggcaaaaaaaaatgtgactaaCTCCAGTCATTGACCATAACACTGAATTGCACGTACAAACCTTTTACATGgtcaaaatgtgtttgtgaatcAGGCCCATACTGTATGAAACTGTGAGCTCTAGTTAGCCGTCTCCAGTTACTGCCGAGTCCAGGAATGATGTCGAAATATTTTTCTTcgtatgtaaaaatgaaaaaaaaaaaagaaagaaaaaacgaagactatttttcaaacaaatgtgtGGGACTGATGTTtgcatgtgcatgtttttttaaacgattCAAGATTTATCATTTGTGCAATgtattcttatttaatattaatacatgttTAATTCTTGCCAAGATAGCTTTTGTAGAATACACCTCTCTAATTGTTAGCCATTAATAAATGCCTATTCACTCCTAGGATTTCCAGTACCATTAATAGATTTACTGAATGTACTGATTTAACACTCATGTTTGTAAtgtctgtaaaatatttgtcatcATATTGGAGTGGACCGAGCAACAGAAAGTGTTGTAGACAAAAGAGAACGTGCTAGAATGTGGGATGAGATGAAATCTGTTGCTCCGCGTCCATGAAACGGCATTCCGATATGTGCCTTATTTGTTAGTTATGAAAACTGAAGACTGTGCTTTTAGAAGTTTGTTCGATTAAAACATTGACTAAGTGAA

Function

symbol description
zcchc24 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Orthologous to human ZCCHC24 (zinc finger CCHC-type containing 24).

NR:

description
zinc finger CCHC domain-containing protein 24-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255007.1 True 5164 mRNA 0.38 4 11153591 11185986

Neighbor

gene id symbol gene type direction distance location
ppa1b LOC107716302,LOC107564343,LOC107673928,LOC107668792,LOC107708308,LOC107588733 coding downstream 189193 10959441 ~ 10964398 (-)
sar1ab sar1ab,LOC107668793,LOC107708324,LOC107564344,LOC107588735,LOC107673926 coding downstream 194974 10955438 ~ 10958617 (-)
tysnd1 LOC107673878,LOC107716300,LOC107708039,LOC107578377 coding downstream 198448 10951451 ~ 10955143 (-)
trmt2b trmt2b coding downstream 238835 10913050 ~ 10914756 (-)
scdb LOC107716350,LOC107707381,LOC107673932,LOC107588636,LOC107585302 coding downstream 241762 10906055 ~ 10911829 (-)
wu:fj13e08 LOC107707292,LOC107668826,LOC107588624 coding upstream 452 11186438 ~ 11192124 (-)
LOC122356818 NA coding upstream 6319 11192305 ~ 11195431 (-)
LOC122356100 si:dkey-275b16.2,LOC107588698,LOC107708014,LOC107757157,LOC107564350,LOC107668834 coding upstream 8500 11194486 ~ 11199080 (-)
tmem72 tmem72,LOC107707262,LOC107757114,LOC107564361,LOC107673868,LOC107668804,LOC107588619 coding upstream 33617 11219603 ~ 11223816 (-)
LOC122356689 LOC107668812,LOC107588612,LOC107707231,LOC107757103,LOC107548607 coding upstream 126181 11312167 ~ 11324704 (-)
G92848 NA non-coding downstream 4339 11146178 ~ 11149252 (-)
G92841 rps24,LOC107588699,LOC107673889,LOC107668764,LOC107564360 non-coding downstream 159793 10989282 ~ 10993798 (-)
G92840 LOC107668764,LOC107716286,LOC107564357,LOC107564360,LOC107673889,LOC106577227 non-coding downstream 164896 10988414 ~ 10988695 (-)
G92839 LOC107668764,LOC107564357,LOC107716286,LOC107673889,LOC106577227,LOC107703098 non-coding downstream 167071 10986302 ~ 10986520 (-)
G92836 LOC107668836 non-coding downstream 176132 10976533 ~ 10977459 (-)
G92842 NA non-coding upstream 71094 11257080 ~ 11262637 (-)
G92934 arhgap22,LOC107588697,LOC107668831,LOC107708000,LOC107673870,LOC107548604 non-coding upstream 224644 11410630 ~ 11411439 (-)
G92935 NA non-coding upstream 226197 11412183 ~ 11413253 (-)
G93062 NA non-coding upstream 438812 11624798 ~ 11625140 (-)
G93063 NA non-coding upstream 443454 11629440 ~ 11629749 (-)
G92819 NA other downstream 218260 10924944 ~ 10935331 (-)
c13h10orf53 zgc:153142,LOC107683743,LOC107588649,LOC107707510,LOC107716306,LOC107673897 other downstream 519025 10632250 ~ 10634566 (-)
LOC122356841 fancl,LOC107585345,LOC107718841 other downstream 961825 10174413 ~ 10191766 (-)
G92267 NA other downstream 2038040 9115093 ~ 9115551 (-)
G91775 LOC107601816,LOC107666427,LOC107726984 other downstream 3105690 8043565 ~ 8047901 (-)
rassf4a LOC107668802,LOC107588618,LOC107707254,LOC107564351,LOC107673909,LOC107757153 other upstream 14566 11200552 ~ 11218985 (-)
zdhhc16a zdhhc16,zdhhc16a,LOC107708229,LOC107668773,LOC107673955,LOC107548628 other upstream 339417 11525403 ~ 11532457 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other upstream 457944 11643930 ~ 11648035 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other upstream 585442 11771428 ~ 11799032 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other upstream 1092468 12278454 ~ 12293594 (-)

Expression


Co-expression Network