tmem50a (tmem50a,LOC107724601,LOC107667962,LOC107734296,LOC107679157)


Basic Information

Item Value
gene id tmem50a
gene name tmem50a,LOC107724601,LOC107667962,LOC107734296,LOC107679157
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 17968063 ~ 17973664 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255016.1
GCGCACGCTTTGGTTGGCAGGATGCGCTCAGCCAATGGGGACCGATGCAGAGCGCACTGCGCATGCGCGGCTCAGAGCCACTGTTTGAGACGGAAGACTGCGGAGTGCGTCTCCACATACTGCGAAACACAAGAAAACTCAAGAAAAGTGCAGGACCGGGGCAGATCAGAAGCATGTCGGGGTTTCTGGACGGGATCAGATGCGGCGATTGCGAGTGTAACGTGGACTGGGGCGAGAAGAGAAACACCATCGCCTCCATCGCAGCCGGCGTTCTGTTCTTCACAGGCTGGTGGATCATCATCGACGCAGCGATAATGTACCCTAAAGAGGAAGAGTTTCATCATGCGTATCATACCTGCGGAGTTATAGCGACTATAGCCTTCCTCATGATCAATGCGGTGTCTAATGGTCAAGTGAGGGGCGACAGCTACAGCGAGGGCTGCTTGGGACAGACGGGTGCCAGAATCTGGCTCTTCATCGGCTTCATGTTGGCGTTCGGGTCTCTCATCGCCTCTATGTGGATTCTGTTTGGTGGTTTTGTTGTGACTGaaaaaaaggatttgTCGGTGTATCCCGGCATCGCAGTTTTCTTCCAAAATGCTTTCATCTTCTTTGGTGGTCTGGTGTTCAAGTTTGGCCGAACTGAGGACCTCTGGCAGTAACGGATCCATTTCCTTCAATCAAATCCCACAGTCCATCAACACACAATTCCTCCGTACTTATTGCTGCTTATTTGcactctttatttctttctctcccctTTTCAACTCCTCGGCTGACTCCCGTTCTTGAATATGTTCCCGCTTCCTGTCTTTGTCTCGTTTCCTGTGTGGCGCGGTGGGCGCCCGCAGAGAGAGAATTGCGGATCAAATCAGTCTCTGCAGTCGAAATGGACACGTTTAGACCTCGTCCTGCATTTCTAATGCAAATGGCTTGTATACAGTGaaatcacaatgaaaaaaaaatgcagacagCGTACCGTCAAGCCAATATCTTCAgagaaaaactttaaaaaaaaaaaatattgttacgCGAGTTTTTGAGCATAATCAATAACCAAAATGAGTGTGACTGGCTTTCAGTCTTTTCAGCttcactgtgtctttttttttttttttttttaaatcatttaaataaaagtctctTCTTTTTTGAATAAGCCACCGAAATTGTATCTTTCGGTAAACTTTCATTTCCGTGCAGTCGAGAACACGGCTCAACTTTCAGCCAGCTGATATCACAACAAGCTCTTTATTCTACGTCTTActtttgtaagatttttttttttatatatcgcTTTATGTGGTTTCCCATGCTTTACGCAGCCATtcagttgtttaatttttaaactttacacCGATTGCACTGAGCACAAGCAGTTTCTCATAGCCGAGCGTAACTAGAAACGTATATTCGCTgtcaatatttttcatttctgtgcgACTAGTCAAACCAAACAGCCtatttcttttgagtttttcttGACTGTGGGAAGCCTGGTTATATATTTTGTAGCTTTGGGAGCTTTAAGTCGACTCTCCTGTGTATGTGTGGGCGATATGGGAgttgtataaaaatgttaatgtttttaaaagcacaatttcttattatttcagTGGTTATGGGATGAATAAGATGAAATGCGAGTCGACTCGACTCGTCAACTAACAAATTAGAGATTCTGTGATTTCTACCTGTTAAAaagaatgtaacattttaatgtaatccgtgtctctctttctgacaAAAAAGTAGCCGAACTTCATCCAACTGTgggtttaaatgaataaaattattgtaaatatg

Function

symbol description
tmem50a Predicted to be involved in late endosome to vacuole transport via multivesicular body sorting pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to several human genes including TMEM50A (transmembrane protein 50A).

NR:

description
PREDICTED: transmembrane protein 50A

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255016.1 True 1806 mRNA 0.43 7 17968063 17973664

Neighbor

gene id symbol gene type direction distance location
mgst3b mgst3b,LOC107597693,LOC107667953,LOC107679158,LOC107734273,LOC107561782 coding upstream 1177 17964990 ~ 17966886 (+)
syf2 syf2,LOC107667968,LOC107679146,LOC107734269 coding upstream 16033 17946259 ~ 17952030 (+)
zbtb8os zbtb8os coding upstream 215131 17742959 ~ 17752932 (+)
LOC122356173 marveld1,LOC107564681,LOC107664302,LOC107736855,LOC107665576 coding upstream 545241 17421621 ~ 17422822 (+)
zfyve21 zfyve21,LOC107724627,LOC107734304 coding upstream 982861 16976130 ~ 16985202 (+)
maco1b tmem57b,LOC107734295,LOC107561778,LOC107679154 coding downstream 6715 17980379 ~ 17994138 (+)
ldlrap1b ldlrap1b,LOC107667965,LOC107597650,LOC107561785,LOC107724600,LOC107734307 coding downstream 23267 17996931 ~ 18036864 (+)
LOC122356284 s100pbp coding downstream 63873 18037537 ~ 18043183 (+)
LOC122356940 LOC107734282,LOC107734283,LOC107597647,LOC107575482,LOC107679140 coding downstream 72233 18045897 ~ 18073101 (+)
olig4 olig4,LOC107597691,LOC107679159,LOC107735633,LOC107734277,LOC107655687,LOC107585473 coding downstream 109838 18083502 ~ 18113478 (+)
G94637 NA non-coding upstream 78162 17889654 ~ 17889901 (+)
G94543 NA non-coding upstream 723094 17212947 ~ 17244969 (+)
G94501 NA non-coding upstream 937988 17021864 ~ 17030075 (+)
G94484 NA non-coding upstream 1029409 16926914 ~ 16938654 (+)
G94481 NA non-coding upstream 1042926 16886084 ~ 16925137 (+)
G94741 NA non-coding downstream 188313 18161977 ~ 18162280 (+)
LOC122356621 NA non-coding downstream 289644 18263308 ~ 18264596 (+)
G94750 NA non-coding downstream 289860 18263524 ~ 18270603 (+)
G94753 NA non-coding downstream 399899 18373563 ~ 18375173 (+)
G94785 NA non-coding downstream 545976 18519640 ~ 18519911 (+)
G94564 LOC107664233,LOC107736862,LOC107665565,LOC107747268,LOC107601026 other upstream 392125 17560296 ~ 17575938 (+)
G94378 capn1a,LOC107549131,LOC107676389,LOC107586085,LOC107679188,LOC107734280 other upstream 1362680 16597781 ~ 16605383 (+)
G94324 NA other upstream 1449237 16515827 ~ 16518826 (+)
nkx1.2la nkx1-2,nkx1.2la,LOC107601042,LOC107702751,LOC107665606,LOC107586110,LOC107719237 other upstream 2063154 15901540 ~ 15904909 (+)
G94186 st3gal7,LOC107665608,LOC107601047,LOC107747259 other upstream 2090641 15873444 ~ 15877422 (+)
G94760 NA other downstream 465509 18439173 ~ 18439583 (+)
G94789 LOC107563058 other downstream 563228 18536892 ~ 18537443 (+)
G94776 NA other downstream 571688 18545352 ~ 18631718 (+)
lhcgr lhcgr,LOC107688869,LOC107679161,LOC107733338 other downstream 1182618 19156282 ~ 19170027 (+)
foxn2a foxn2,LOC107588458,LOC107679166,LOC107725033,LOC107667132,LOC107572676,LOC107733332,LOC108441706 other downstream 1581934 19555598 ~ 19590284 (+)

Expression


Co-expression Network