ap3m1 (LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495)


Basic Information

Item Value
gene id ap3m1
gene name LOC107743512,LOC107655430,LOC107726964,LOC107559324,LOC107601875,LOC107666495
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 9338278 ~ 9342544 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255023.1
ATTCGCGACAGGCTTAGATTCGAGCGCATGAAACGGGAAGGAGGAGTGACACATCTGCCACATTTGCAAGCGGAGATACTGCCTGAAAACATTAATCAAGACAGCTGTCTACAACCCTCATCATGATTCACAGCTTGTTTCTGATAAACAATGCTGGCGATTTATTCCTGGAGAAACACTGGAAGAGTGTCATAAGCCGCTCCGTCTGCGATTATTTTTTCGAAGCACGCGAGAAGGCAGTGGAACCTGACAATGTGCCTCCCGTCATCCGCACCCCTCATCACTATCTCATAAACATCTACCGTGAGAAGATCTTCTTTGTTTCTGTCATCCAAACAGAAGTGCCTCCACTCTTTGTAATAGAATTTCTGCATCGAGTCGCAGAGACATTTCAGGACTATTTTGGAGAATGTTCTGAGACCACTATCAAGGACAATATGGTCATAGTCTATGAGCTCTTGGAAGAAATGTTGGATAACGGCTTCCCCCTCGCTACAGAATCCAACATCTTGAAAGAACTCATCAGACCTCCCACAATCCTGCGGTCGATGGTCAACACCATCACGGGCAGTAGCAATGTTGGCGAAACCCTCCCTACTGGACAACTGTCCACTATCCCATGGAGAAGAGCGGGTGTGAAATATACCAATAATGAGGCTTACTTTGATGTGGTGGAAGAAATCGATGCCATCCTGGATAAGTCGGGAACTACAGTCTTTGCAGAAATCCAGGGAGTTATTGATGCTTGTGTCAAACTCTCTGGAATGCCAGACCTTACTCTCTCATTTATGAACCCCAGGCTCCTGGACGATGTAAGCTTTCATCCGTGCGTCCGTTATAAGAGATGGGAAAGTGAGAGAGTTATCTCCTTCATTCCCCCAGATGGAAACTTTCAGCTCATGTCGTATCATATCAGTGCTCAGAACCTTGTAGCAATCCCGGTATACGTGAAGCAGAACATCAGTTTCTTTGAGACTGGATCTTCAGGAAGACTGGATATCACTGTGGGTCCTAAGCAGACCATGGGGAAGACCGTGGAGTGTTTGGTAGTGACTGTACACATGCCCAAAGTGCTTCTCAGTGCCAACCTCAATGCAACTCAGGGAACCTACAACTATGACCCCGTCACAAAGATTTTGGTGTGGGATATAGGGAAACTTAATCCCCAGAAGCTTCCCAATCTGAAAGGAAGCCTAAGCCTGCAGTCTGGAGCTCCTAAACCAGAGGAGAACCCAAGTCTGAACATTGACCTGAAAATCCAGCAGTTGGCAATCTCAGGATTGAAAGTCAATCGTCTAGACATGTACGGAGAGAAATATAAGCCATTCAAGGGTGTGAAATATGTGACCAAAGCTGGGAAGTTCCAGGTCAGGACATGAGGCCAGCTGCAGAGTAGTATCACAAGGATATGCCAAAAGTTTATTGGAGGTGCCATTTTCTAAGTGACAAATCAAACAGGATCGCAGCCTTGTGCGCAACCtcccttattattattattttttaaatatggcagttacatttattattgtaatatttatcttattttgtgaCAGTTACTGGCAATTTGCAAGAAGTGAAAATCTTTCCACTGGAGAGCATTGGGAGAGCATTTGCATTGGGAATCTTTCACTTCATATCAACAACATTCCATTAATATTTTAGGTTGAAGGTACGGCAAATCTATGCCAGAAACGCATTAGATTAATCACAATACTGCTTTACAGTCTTAGATCTTACTGTCACAAAACAATACTTGAGAGTTTCTGCACATATTCACAGGCCTTACATTTTTCacttaaatttattttcttgcTCTGTGGCCttttgaatgataaaaaaatgcttcGAGGAGGCCTCACACACTCAAATggcctttttaaaaagaacagtcATGCTTATAGCAGGACATATATTTACAACGATGCAATCTACTACACAACCACATCACTGTTCAGAGGTGAATAGAAGCTGTTTCTGCTCGAGAGACAATATACACCTAGAGTAGTTTGCCACATACAAGCACTATGGAGCCAGTGTGAGTGACAAAATCAGTTTTGTTGCACTGACCTGCACTCATACAGTAGATATGCAGGTTCTTCTACCTTAATGAAGCTTTGAGGATTTGCACACAAGGACAcacaattgcatttttttattgtaaattgtcaAGGGAACTACATATGTATTTAAACCAAAAGCCTTCAGATTTATAAAGTTTGCGAACAAAAA

Function

NR:

description
PREDICTED: AP-3 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12398 AP3M; AP-3 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255023.1 True 2229 mRNA 0.43 9 9338278 9342544

Neighbor

gene id symbol gene type direction distance location
LOC122356812 LOC107725429 coding upstream 168025 9169279 ~ 9170253 (+)
dusp13a dusp13a,LOC107725429,LOC107666542,LOC107601810,LOC107743611,LOC107552920,LOC107671562,LOC108426746 coding upstream 168673 9166378 ~ 9169605 (+)
si:ch211-223p8.8 LOC107552909,LOC107743613,LOC107552922,LOC107667280 coding upstream 177556 9159647 ~ 9160722 (+)
col17a1b LOC107667282,LOC107743515 coding upstream 200849 9120348 ~ 9137429 (+)
cfap43 cfap43,LOC107743591,LOC107666552,LOC107601792,LOC107667278,LOC107578899,LOC107683315 coding upstream 222101 9103033 ~ 9116177 (+)
chuk chuk,LOC107726965,LOC107601877,LOC107559325,LOC107743510 coding downstream 47678 9390222 ~ 9397047 (+)
LOC122356357 gsto1,LOC107601880,LOC107726961,LOC107743610,LOC107559317,LOC107655421,LOC107666511 coding downstream 54945 9397489 ~ 9400354 (+)
LOC122356356 gsto2,LOC107726960,LOC107666561,LOC107559318,LOC107601879,LOC107743609 coding downstream 59443 9401987 ~ 9404636 (+)
calhm3 calhm3,LOC107726959,LOC107666391,LOC107743606,LOC107559321,LOC107578949 coding downstream 67207 9409751 ~ 9412120 (+)
calhm1 calhm1,LOC107726957,LOC107601812 coding downstream 69806 9412350 ~ 9414196 (+)
G92147 NA non-coding upstream 62579 9264064 ~ 9275699 (+)
G92111 NA non-coding upstream 193767 9140217 ~ 9144511 (+)
G92108 erlin1,LOC107743516,LOC107725471,LOC107666491,LOC107601865,LOC107676597 non-coding upstream 240373 9050367 ~ 9097905 (+)
G92087 slc1a4,LOC107725464,LOC107552941 non-coding upstream 372689 8929442 ~ 8965589 (+)
G92066 NA non-coding upstream 441369 8836716 ~ 8896909 (+)
G92313 NA non-coding downstream 107902 9450446 ~ 9450689 (+)
G92334 mcmbp,LOC107726945,LOC107601886,LOC107559330 non-coding downstream 136877 9479421 ~ 9479752 (+)
LOC122356835 NA non-coding downstream 228445 9570989 ~ 9583671 (+)
G92361 NA non-coding downstream 249875 9592419 ~ 9594277 (+)
G92432 NA non-coding downstream 381852 9724396 ~ 9727967 (+)
zgc:153981 zgc:153981,LOC107725455,LOC107666543,LOC107601871,LOC107671561,LOC107552921,LOC108426808 other upstream 174164 9161517 ~ 9164114 (+)
spef1 zgc:66426,LOC107601866,LOC107725472,LOC107666492,LOC107743614 other upstream 249157 9080848 ~ 9089121 (+)
fuom fuom,LOC107676595,LOC107666397,LOC107601808 other upstream 310369 9025943 ~ 9027909 (+)
sf3b5 sf3b5,LOC107601807 other upstream 598183 8739036 ~ 8740095 (+)
pcnx2 pcnxl2,LOC107725461,LOC107601842,LOC107743596,LOC107666362,LOC107676602,LOC107552953 other upstream 655226 8666267 ~ 8683052 (+)
atoh7 atoh7,LOC107726941,LOC107601814,LOC107666420,LOC107743508,LOC107655428,LOC108426756 other downstream 87634 9430178 ~ 9434605 (+)
LOC122356813 adka,LOC107743514,LOC107666490,LOC107601874,LOC107655429,LOC107725426,LOC100196663 other downstream 862569 10205113 ~ 10249725 (+)
ly6pge si:ch73-28h20.1,LOC107716297,LOC107673896,LOC107585320,LOC105890420,LOC106578825 other downstream 1073696 10416240 ~ 10420426 (+)
eif4ebp2 eif4ebp2,LOC107668794,LOC107588631,LOC107716353,LOC107564345,LOC107707337,LOC107673927 other downstream 1622311 10964855 ~ 10968914 (+)
G92772 LOC107588620,LOC107707271,LOC107707282 other downstream 1870982 11213526 ~ 11218175 (+)

Expression


Co-expression Network