jag1b (jag1,jag1b,LOC107655002)


Basic Information

Item Value
gene id jag1b
gene name jag1,jag1b,LOC107655002
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13493819 ~ 13521130 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255047.1
CGCAGTCAGTCAGTCGCGGACAAACGCTCTCATGGCTTCTGTGTAATGTATACCCGCcgctgagagagagaagaagaataAGAAAGATAAGAATTGCAGATACGCTGGGATAATAGGAGGCAGTTTTCTACACATTGGAAAATAGTCttctgaaagaaataaagttgTTCTCCACCCGTGCATGTTAAATCGGGGAGTACATTAGAGCCGTGAGGCGGCTAGAACTTCTGAGTCTCAAAGCAACACCAACAAGAAGGCATGATTGTGCGACGGAGTTCAGTATTTTCTGCTTTCTACCTTCATGCCTTTTTGTTATGCTTGCCGACGAAGGTGTCTGACGCATCGGGGCACTTCGAGCTGGAAATCGTATCGATGCAGAATGCGAAAGGCGAACTGCAGAACGGCTCGTGCTGCGACGGCGAGAGGAACCCGGCGGATCGCAAATGCACGCGGGACGAATGTGatacatattttaaagtttgtCTGAAGGAATATCAATCGCGAGTTTCCGCTGCTGGGGCTTGCAGTTTCGGAACTGGATCTACGCCCGTTCTCGGTGGGAATAAATTTTCGACCAAGGGAACGCGGAGTGAAAAGTCAAGGATTGTTTTACCCTTCAGTTTTGCGTGGCCGcgGTCCTACACGTTGATAGTGGAGGCCTTGGACTTCAATAACGATACCGCCAGCGAAAGTGGAAAGCTCATTGAGAAAGCGTACCACTCTGGCATGATCAACCCAAATCGACAATGGCAGAGACTGACCCACAACGGCCCCATCGCTCAGTTCGAGTACCAGATCCGGGTCACCTGCGATGAACACTACTACGGCTTTGGCTGCAACAAGTTTTGCCGGCCACGTGACGAGTTCTTTGGACATTACACCTGTGACCAGAATGGCAACAAGACCTGCCTGGAAGGATGGACGGGTCCTGACTGCAATACGGCAATCTGCAGACAAGGTTGCAGCACCGAACATGGATCTTGTAAACAACCAGGTGGCTGCAAGTGTCTTTACGGCTGGCAGGGTCCATATTGTGATAAGTGCATCCCTCATCCGGGCTGTGTACACGGAACCTGCGTTGAACCCTGGCAGTGCCTCTGTGACACTAACTGGGGTGGACAACTCTGTGACAAAgATCTAAACTACTGTGGAACTCACCAGCCGTGTCTGAATGGAGGAACGTGCAGCAATACAGGGCCTGACAAATACCAGTGCTCTTGTGAAGATGGCTACTCTGGGGTCAACTGTGAACGAGCTGAACATGCCTGTCTGTCCAACCCTTGTGCGAATGGAGGTACGTGCAAGGAGACCAGTCAGGGTTACGAGTGTCACTGTGCAGTCGGCTGGAGCGGCCCATCGTGCGAAATCAATGTGGATGATTGTACACCCAACCCATGCAAACATGGAGGCACCTGTCAGGATTTGGTAAATGGCTTCAAATGTACCTGCCCTCCTCACTGGACCGGCAAAATGTGTCTGATTGaTGCCAATGAATGTGAGGACAAGCCATGTGTGAATGCCAAGTCATGCCACAATCTGATTGGTGGATATTTCTGCGAGTGTCTCCCTGGTTGGACGGGTCAGAATTGTGATATAAacatAAATGACTGCCAGGGACAATGTCTGAATGGAGGAACTTGCAAGGATTTGGTGAATGGTTACCGCTGTCTTTGCCCTCCTGGCTATTCGGGAGAACACTGTGACAAGGATGTGGATGAGTGTGCTAGCAGTCCCTGCCTGAACGGTGGCCGGTGTCAGGATGAAGTCAATGGATTTCAGTGTCTGTGTCCTGCTGGCTTTTCAGGTCAGCTGTGTCAGTTGGATATCGATTACTGCCAGCCCAACCCATGTCAGAACGGCGCGCAGTGTTTCAACCTGGCCTCGGACTACTTCTGCAAATGCCCCGATGACTACGAGGGTAAAAACTGCTCTCACCTGAAGGACCATTGTCGAACCACATCATGCCAAGTGATTGACAGCTGCACTGTTGCTGTGGCATCCAACAGTACGCCGGAAGGGGTGCGATATATCTCCTCAAACGTCTGTGGTCCTCACGGACGCTGCAGGAGTCAGGCTGGAGGCCAGTTTACGTGCGAGTGTCAGGAAGGATTCAGAGGCACCTACTGCCATGAGAATATAAACGACTGTGAGAGTAACCCATGTCGCAATGGCGGTACTTGCATCGATAAGGTGAACGTTTATCAGTGCATTTGTGCTGACGGCTGGGAAGGAGGTCACTGCGAAATCaACATTGATGACTGCGGCTTGAACCCCTGTCTGAACAAGGGAGCATGTCAAGACCTGGTGAACGATTTCTACTGCGAATGTAGAAATGGCTGGAAGGGAAAAACCTGCCACTCCCGTGATAGTCAATGTGACGAAGCCACATGCAATAATGGAGGTACATGTCATGATGAAGGGGACATATTCAAATGCAGGTGCTCACCTGGCTGGGAAGGAGCCACGTGTAACATAGCCAAGAACAGCAGCTGTCTGCCCAACCCATGTGAGAACGGAGGCACCTGTGTGGTCAACGGCGACTCCTTCACCTGCGTCTGCAAGGAAGGCTGGGAAGGATCCACCTGCACGGAGAataCCAACGACTGCAACCCACACCCATGCTACAACAGCGGGACGTGTGTGGATGGTGAAAACTGGTACCGTTGCGAGTGCGCTCCGGGTTTCGCCGGGCCAGACTGCCGCATAAATATAAACGAGTGTCAGTCTTCTCCCTGCGCAATTGGCTCTACCTGCGTAGACGAAATCAATGGTTATCGTTGCCTTTGTCCACCTGGAAGAACAGGACTAGAGTGTCAAGAAGTCATTGGGAGACCCTGTATTGCTAACGGACAAGTAACTGCGGATGGTGCTAAATGGGAGGAAGAATGCAACATTTGCCAGTGTCAAAATGGAAAGATTCATTGCACCATGATGTGGTGTGGACCGAAATCATGTCGGGCAGGAAAGGCCAGAAATGGGTGTCCTGCAGGTCAATCCTGTGTTCCCATCAAAGAAGAGCACTGCTTTGTCAAACCCTGTCCTAGTCTGGGAGAGTGTTGGCCCCCTGCACCCCCTCCACCCTCCAAATGCCACGCCAGCTTCTCTTACCAGGACGACAGCTGTGCCAACATCACGTTCACCTTTAACAAGGAGAACATGCCTCAAGGCCTGAGTGTGGAACATGTTTGTAATGAGCTGAGGCACTGGTACCTGCTGAAGAACCTCACGGCAGAGTACGCTGTGTCCATCACCTGTGAGCCATCTTCTTCAGCCAGCAATGAGATTCACGTCAGCATTTCCACAGAAGAGCCCAGGTTGGACAGGAATCCTATTAAAGACATTACGAGTCAAATATTTGACTTGGTGAGCAAGCACAATGGTAACAGCACCATCATCAAAGCCATCACCGGCGTACGAGTTCACCAGACACCAAGCCCCGAAACTGGCTACTTGGTTCCTCTGCTCAGCTCCATCTTCATCGTGCTCTGGATCCTCGCCCTGGCCTCGGCCTTCCTGTGGTGCATTCACCGCCGCCGGAAACAGAACACTCACAGCAACGCAACTACCTCAGCTACAGAGGACAATACCACCAATAACGTGCGTGAGCAGCTCAACCAAATCAAGAACCCCATCGAGAAACACTCGGCCCACGGCGTGGCCATAAAAGACTACGAGGGAAAGAACTCCATCATTGCCAAAATTAGGACGCATAACTCCGaggtggaggaagaggagatggACAAACACCTGCAGAAAGCGCGCTTCACCAAGCAGCCGGCTTACACGCTGGTGGAACGGGAGGAGCGCGCGCCCAACAAAAACCCAAATTGGACTAACAAACAGGACAACAGAGACTTAGAGACGGCACAAAGCTTAAACAGGATGGAGTATATCGTATAGCAGGCAGCTGTGTTGCCGTGCGACTGAACCCCTGTTGCACTTACCGGTCATTTGGCAGGGTCTCGGGGGGGTTGTGCTTCTTAAAACTGTTGCGTCGTGTTCTGGACTCCAAGGCCGTTATTTGCCTAGAATCCTGTGTTAATTTAAGTTTTGACAAGCTGGCTTCACACTGGCAATTGTAAAAGTTGCTGTGGACGGCTGGAAAACCCAAATGCTGCGTTTCGCATCCAGTGTTTTCcttcgtaaaaaaaaataaaaataaaaattgttt

Function

symbol description
jag1b Predicted to enable Notch binding activity. Acts upstream of or within several processes, including animal organ development; face morphogenesis; and fin regeneration. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including digestive system; endocrine system; nervous system; otic vesicle; and pharyngeal arch. Human ortholog(s) of this gene implicated in Alagille syndrome; congenital heart disease; multiple sclerosis; and tetralogy of Fallot. Orthologous to human JAG1 (jagged canonical Notch ligand 1).
jag1 Enables Notch binding activity and phospholipid binding activity. Involved in several processes, including circulatory system development; negative regulation of cell adhesion; and neuronal stem cell population maintenance. Located in plasma membrane. Colocalizes with membrane. Implicated in Alagille syndrome; congenital heart disease; multiple sclerosis; and tetralogy of Fallot. Biomarker of hepatocellular carcinoma; multiple sclerosis; osteoarthritis; and temporal arteritis.

NR:

description
protein jagged-1b-like

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0048752 semicircular canal morphogenesis biological_process
GO:0007219 Notch signaling pathway biological_process
GO:0060117 auditory receptor cell development biological_process
GO:0031016 pancreas development biological_process
GO:0009953 dorsal/ventral pattern formation biological_process
GO:0032474 otolith morphogenesis biological_process
GO:0001889 liver development biological_process
GO:0030878 thyroid gland development biological_process
GO:0060325 face morphogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005112 Notch binding molecular_function
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06052 JAG1, CD339; jagged-1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255047.1 True 4171 mRNA 0.51 26 13493819 13521130

Neighbor

gene id symbol gene type direction distance location
macrod2 macrod2,LOC107600572 coding upstream 419320 12613777 ~ 13074499 (+)
ephx5 ephx5,LOC107724402,LOC107585505,LOC107675570,LOC107705353,LOC107654996 coding upstream 883782 12605843 ~ 12610037 (+)
cfl1l NA coding upstream 934301 12557143 ~ 12559518 (+)
LOC122357113 NA coding upstream 1000080 12488581 ~ 12493739 (+)
brf1a brf1a,LOC107655005,LOC107675573,LOC107705399,LOC107724496,LOC107588563 coding upstream 1008157 12450571 ~ 12485662 (+)
mkks mkks,LOC107683876 coding downstream 37963 13559093 ~ 13563325 (+)
wdr27 wdr27,LOC107739896,LOC107585515,LOC107683903 coding downstream 60096 13581226 ~ 13617273 (+)
thbs2a thbs2a,thbs2,LOC107705413,LOC107654977,LOC107739867 coding downstream 105468 13626598 ~ 13645581 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding downstream 129778 13650908 ~ 13675048 (+)
gpr75 gpr75,LOC107602942,LOC107654975,LOC107683917,LOC107705414,LOC107553188,LOC107739897 coding downstream 154637 13675767 ~ 13678632 (+)
G93512 NA non-coding upstream 145781 13346861 ~ 13348038 (+)
LOC122357146 NA non-coding upstream 277062 13216658 ~ 13216757 (+)
G93485 sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566 non-coding upstream 302024 13187585 ~ 13191795 (+)
G93474 NA non-coding upstream 329506 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 891278 12602191 ~ 12602541 (+)
G93643 NA non-coding downstream 239922 13761052 ~ 13930287 (+)
G93649 NA non-coding downstream 340921 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 424200 13945330 ~ 13950605 (+)
G93592 NA non-coding downstream 510252 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding downstream 569395 14090525 ~ 14091232 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 335379 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 904821 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 918607 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 958748 12502385 ~ 12535071 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other upstream 1057176 12431919 ~ 12436643 (+)
G93613 NA other downstream 218477 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other downstream 228005 13749135 ~ 13760734 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 664185 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 832985 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1585328 15106458 ~ 15226722 (+)

Expression


Co-expression Network