wdr27 (wdr27,LOC107739896,LOC107585515,LOC107683903)


Basic Information

Item Value
gene id wdr27
gene name wdr27,LOC107739896,LOC107585515,LOC107683903
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13581226 ~ 13617273 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255050.1
AAACGCTTTCGTTTCCAAAGCAACAAGGACACACAGGCTGCTGGGTCTCAGGTTATAAAAACTAGAAGTTCATTTACGAACTACACGTACATGATCATTATATATGGGTTACATTTGTAACAAAGCAGGGAACTATTGGGATCTCCATGGCTGCTGTGACCTCAGAGCACTATTTTACTGAGAGGTTCTCTCTAACTTTCAACAAGCCACTTTCCCACCTGCAACTCGCTTGCTGTCCTTCTCACTGTGCTGTCTCATGGCAGGACAAGAATATAAGGATTTATGAAAACAACAACCTGGAGCCTCCCTTGGAACTCACTGGACACCATGGTTACGTATCTGCCATGACATTTGGGATGGTGAGAGATCGTCTCCTCCTCTGTAGTGCTTCTGCAGATTATGTTATCATCTGGGACATTGATCGCTGCTATACACAGATCAAAGACGGTGGAATTGCCTCAGGTAGAGTTGTTGGCACATCGCTTGGCAGGGTGGTGCATCTGTCACTGTGTCCACTGAGCGCAAAAGTGGCCGCATGCTCCGGCTccagaatgtttttattgaatgcAGAGAGAGAGGAAGTGCCTAGAGTTTTGAAAGCTCATCTTGGTCCTGTGACTACATCAGAGTTCTGTCCATGGGATGTTAATCTTCTCATATCAACATCAGAAGACAGAACATTTAAGATTTGGGATGTGAAGAGGGGTGATATACTCTTTGAATCTCCTGTCCTATCAGCGTATCCACTGCTTAGTCTGTTCTTCATGGAGCAAAACAGTCAGTTCATCACAGGGTCTGGTGACGGACAGCTTTGGCACTACACTCTCCCTGGGGACTACAAATGCCGCTTGGTGACAAAACTGGACCTTTCAAAGCTTCAAGAAAAGCACGAGCGAAACCTCAGAAAACCCAGCTCACCTCAAAATAGACCAGATGGAATGACTCGTAATGATGTGAGAGGAACAGTGGAGACAGCAAAGCCTGTTCTGAGAATTTGGGCACAGAAACTGCAGTCCAGTCATACTAGCCTGCCGAAGAGAGAAAGTTGCGTGTGGATCGGAAGTTCTGATGGACTATATCTGATCGACCTGGATACTTCAGAACTTCTCATGAATTTTCCACTCAAAGgtGACCTAAGTATTTCAATGGCAGGGTCATGGGCCATCTCTAATGAACTTGGTGGCAATATGTGTTGCTTGGTGACTTCTCTCTTTGGGACTTCAGTAGCCCTTTTAGAGGTTAATCGTGCCAGACTGGATGAGCTCTGCTTTAGCATGGCAACGGGGCTCTCTGTGAATGAACAACTTTCAGCTGTGCCCAGTTCTCCTCTGATGACTATGTCCCCTCTGAATGCTGAGCTGGCAAAACGTGGCCCAAAACCTCAGAGAAAAATCGGTGTGAGCTGTCAGAGTGTAAAGGATCAGCCTTTAGTTTTTCACACACAAGTGAAGTCATCAGGATATAATACAGCTCCTCACAGGACCATGTTTAGACCAAAGACCAATGTTAAGAAGAACAGCAGTTCTGCCGCAACAACAAGCACAAATACCAAACGCCTTTTAAGTGAGTATCCTTCCCATTTTGAAGCACCATGTATGCCTTATGCTCACTTGACAGTTTCCACAACTTCAACCCCTCTCAGCTCTCTACAGTACTCAGGAGATGGAAAGCAGATTGCGTGTGGTCTTGGAGACGGTTCTGTTTTGTTGTACAACTCTTCACTCACCAGCAACCCAGCTGTCTACACAGaGCACAGTAAGGCTGTGAACACAATATGCTGGAGTCACAGTAAGCGGTGGTTTTTGAGTACCTCTGAGGACCTCACCCTTTGCATCTGGACCGCAAATGCTTCTGAACCTGTTCTGACCATGGGAGATGACCAGCTTGCAAAGCCTATCAGAAGTGCACAGTTTTATTATCTGGACAAGTTTTTACTGCTGGCGTCAGGATCAAATCTAATGCTGTACCTTTACCATCTGGACACCACGAAAGATGACATCAAGAGGTATAAGCAAAGAAGCAAGTCTAAATTGGCCAGTAAATTCAGCATGAAATCAGGAACGGACATAACTTCAATGTCGGCTATCAATGATTTCTACTCCTATTTGGTCTTGGCTGCTGGCGCTGACCGCACCATTCAAGTGTTTGATATGAACCAGGGCTGTATGGCCGCTCAGATCCCCGATGTCCACTGTCGAGCTGTCCACCACCTCACCCAGAACAAGGGATCCGCGTTCTGCACACAGGCCTTGGAATCATACAATCTCTTCCTGAGCAGTGCAATAACAGATGGTCTGAAATTGTGGGACCTGCGCACTGCAAGGTGCGTTCGCCGATATGACAGCCACATTAATCGCTGTCACCATTGTACTGCAGTCTTCTCACCCTGCGGTCGCTTCATAGCTACTGGCTCAGAGGACCATTCTGCCTATATATATGACACACGCAGCAGCAACTTTCTCCATAAACTCCCGAGACACTCTGAAACGGTCCTGAATGTGGCTTTCAACCCTGCCAATCCAGAGcTGTTGACTGGAACACTCGATGGAAAACTGGCTTTGTTTCATCCGGCCGAATCTCTTCTCCCTTAAGTGTGGGATCTACCCCAACGGCTCAGTTCTTGCCCCAAGTTCACCGATGGTTGCATGTCTTACATCAGTCACGTTGAGATTACTCTGCTGGCGTGCCACCTCTGAGACCTACATCATGGACGCGATCTGTGATTTCATCATTTCAGCCGCCCCTGACAACCTACAGATGTGACAACATGCTCACACCCTAAACCGCGAAAGCCAAAGACGCACCCTCAGACAAAAGACCGTTTGAGCTTTACATAGAAACATGTTCCCATGCACtgatacacatactgtacacgCACTATGCCGTATTATGCACAGCTTTATATGTTTATCTGATGCGTATTATTATTTGCAGCAAAGTGATA

Function

symbol description
wdr27 Located in cytoplasm and nucleus. Orthologous to human WDR27 (WD repeat domain 27).

NR:

description
PREDICTED: WD repeat-containing protein 27

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255050.1 True 2944 mRNA 0.47 25 13581226 13617273

Neighbor

gene id symbol gene type direction distance location
mkks mkks,LOC107683876 coding upstream 17901 13559093 ~ 13563325 (+)
jag1b jag1,jag1b,LOC107655002 coding upstream 60096 13493819 ~ 13521130 (+)
macrod2 macrod2,LOC107600572 coding upstream 506727 12613777 ~ 13074499 (+)
ephx5 ephx5,LOC107724402,LOC107585505,LOC107675570,LOC107705353,LOC107654996 coding upstream 971189 12605843 ~ 12610037 (+)
cfl1l NA coding upstream 1021708 12557143 ~ 12559518 (+)
thbs2a thbs2a,thbs2,LOC107705413,LOC107654977,LOC107739867 coding downstream 9325 13626598 ~ 13645581 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding downstream 33635 13650908 ~ 13675048 (+)
gpr75 gpr75,LOC107602942,LOC107654975,LOC107683917,LOC107705414,LOC107553188,LOC107739897 coding downstream 58494 13675767 ~ 13678632 (+)
agpat4 agpat4,LOC107739871,LOC107553196,LOC107089284 coding downstream 68766 13686039 ~ 13692349 (+)
kcnk1b kcnk1b,kcnk1,LOC107705375,LOC107654970,LOC107680317,LOC107739872,LOC107553189,LOC108415485 coding downstream 104145 13721418 ~ 13727024 (+)
G93512 NA non-coding upstream 233188 13346861 ~ 13348038 (+)
LOC122357146 NA non-coding upstream 364469 13216658 ~ 13216757 (+)
G93485 sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566 non-coding upstream 389431 13187585 ~ 13191795 (+)
G93474 NA non-coding upstream 416913 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 978685 12602191 ~ 12602541 (+)
G93643 NA non-coding downstream 143779 13761052 ~ 13930287 (+)
G93649 NA non-coding downstream 244778 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 328057 13945330 ~ 13950605 (+)
G93592 NA non-coding downstream 414109 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding downstream 473252 14090525 ~ 14091232 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 422786 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 992228 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 1006014 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 1046155 12502385 ~ 12535071 (+)
LOC122357045 LOC107654926,LOC107705370,LOC107588681,LOC107675516 other upstream 1144583 12431919 ~ 12436643 (+)
G93613 NA other downstream 122334 13739607 ~ 13909603 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other downstream 131862 13749135 ~ 13760734 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 568042 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 736842 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1489185 15106458 ~ 15226722 (+)

Expression


Co-expression Network