sptlc3 (sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357)


Basic Information

Item Value
gene id sptlc3
gene name sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13181337 ~ 13204232 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255052.1
TGTAATAATACACAAGGGGAAATTACACCACAAATCTAAGACAATCTTACAGTTATTTTAACGAAAACACCACATATTTAGTGCATTAAAAATTACCTTTGATAACATATACTTAAAATTCAACATCTGTAGTGCCTCTTTCTGAGGCCCTTACAGATAAAAGACCCTGGTAGACAGACTGGGGCCTGGTCTATAATCCATCCCTTGCTACTTGTTCCAGTTAAATTATGGTTATTATAAACCaagtaaattcatttttttttcacgctGTTTGATAAGTGGTTGTATCATAGGCAGATTGCATCATATGCATTTTTCAACAGCTTCTCTTTTGCCACTGACAACTCGGTTTTAGTGGCTGCAGCaattttacttttgcttttcgTTTGGGCTATAATAAAAAACCATTCACACGGAGATTCACAACGACTGCCGACAACTTTGAAACCGCGTTTTCACGGCTTACTCTCGGAAGTCTTCCATTATCCTCAACGAAGCTGTCAAAGGCAGCGCCCAGCCGCGTCGCGTCGTTCCCCTGATGTCCGCGAATACTTCCTGGTCCAAAGTTGTGTGTACACAAATCAAAGTCACTTGAGCATGAATTCGGATGGTGAAGTCACATCAGGGAAATACACTTCAacggaaacacacacacttctctaaACAGAGGGACAGAGAAGAGAAGTTCAATAGCCTATCATAATTCCTTTCCCGGTGTTGACGCTTCGCAAACATGATACGAACAGACGAACATCATTCATGCAATGGAGCGCTGAAGTCTCATTCTGACCAGAAACAACAGGACAGCAGCGGTTTGAAAAACGGATATCACAGAAACGAAAAGGTGCAGAAAAATGGCAAAGGAGAACGTTTTCATCAACCTCGAGTTAGGGGTGAAGATTCATTTGAGGAGGCCCCCATGTACGTGGCGGTCCTTACGTACATGGGTTACGGAATTGTCATCCTGTTTGGCTATTTCAGGGATTTCTTAAGAGCTGTTGGCTTAGAGAAGTGCCATCAGGCGCAGGAGAGAGAAGAGCAAAAGGACTTTGTTCCCCTGTACCAAgattttgaaaacttttacaAACGAAACCTGTACATGAGAGTCAGGGATAACTGGAACCGGCCTATATGCAGTTTACCTGGCCCCGTTTTTGACGTCATGGAAAGGGTCTCAGATGATTACAACTGGACTTTTAGGTTAACAGGGAGAACCATTGAGAATGTCATAAACATGGGCTCCTATAACTACCTGGGTTTCGCTGAAAACAACGTTGACTTCCTGAAAACTGTGGCACAGAAGACCAGACAGTATGGGGTAGGCGTCAGCAGCACAAGGCAGGAACTAGGCAACTTAGGCATCCATGAGAAACTGGAGCAACTTGTGGCGGAGTTCTTGGGGGTGGAGTCTGCCATGGCGTATGGAATGGGCTTTGCCACTAATTCCATGAACATCCCGGCACTAGTCGGAAAgGGTTGCCTGATTCTGAGCGATGAGCTAAATCACACATCCCTCATCCTGGGAGCCAGGTTGTCTGGGGCAACCATTCGGGTCTTCAAACACAACAACATGCAGAGTCTAGAAAAAATGCTCAAGGAGGCGATATGCTCAGGTCAACCTCGTACCCATCGTGCCTGGAAGAAGATCCTCATCATGGTGGAGGGCATTTACAGtATGGAAGGCTCTCTAGTCCGGTTGCCAGAGATCTTAGCACTAAAGAAAAAGTACAAGGCTTATCTGTACCTCGACGAGGCCCACAGCATTGGGGCTGTGGGGCTCACAGGTCGAGGGGTTACAGAACATTTTGGGGTAGACCCCAAAGAAGTGGATGTTCTTATGGGCACCTTCACTAAGAGCTTCGGGGCTGCTGGCGGGTACATAGCTGGGAAAAAGgaGTTAGTGGATTATCTGCGGAGTCACTCACACAGTGCGGTGTACGCTACAGCCATGTCCCCACCTGTGGTGGAGCAGATCATCAGGgcaattaaatgcatcatgGGTGTCGATGGAACAACAGAAGGCCAGCGAAGAGTTCGGCAGCTGGCTGAGAACACGCGCTACTTAAGATCTCGCCTGAGGGAGATGGGCTTCATCATTTATGGCAACCAGGACTCTCCAGTGGTACCGCTCCTGCTCTATCTACCTGGGAAAGTTGGGGCGTTCTCACGGGCCATGTTGAAGAGGAAGATTGGTGTTGTAGTTGTAGGTTTCCCAGCTACACCCATTACAGAGGCCAGGGCTCGCTTCTGTGTGTCTGCTGCCCACACCAGAGAAATGCTCGATAAGGTTCTTCAGAGCCTTGATGAACTTGGAGACGACATCAAGGTGAAGTTCTCCCGTCACAGATCTTCCTATCGCCCGGAGCCGTATCATGAAACAGACTTTGAGGTGGACAGCTAATCAACTCTTCGTCATAGCTGTGAGTGTAAAGGCTTGTCCAGAGACTGCCAAGGTGCGAATGCCTTTgtcattttagaagaaaacgCGTCCTGCAATTCCACACAGGACAGTtctgtttttccaaaaaaaaaaaaaattgcagtgtTTGTTATTGTTAGTGTTTTTTAATACGAGACATTGacttttacatgtatattttgtaaaattctatttaattgGGTTTTTAACTGCTGTTTcagttttaagatgtttttaaatgattttgtccTCAGGGGATTGTGGGAAAAAGGGAGGGTCCGTGTTTATAGAACTTATATCAAAAGCTGCTCTAAATATATCAAACAATTAACTCCCTTAACACTGACCTACATCAAATCTCTAGCTGTGAAGTGGCCTTATTTTTTTATCCTGCTGCTAAGATGGACTGATGAAAGACTTCCATTCTGTTCTGGATTGTGCGTTTGTGTGATCCACAACTACATCGATTGAAAGAGATTGAACAAGGCTGGGCGTTTCTCATTCACAGTCATTATAAATTCACAAATTGGATCTCGCAGCTCTACAAGTCTTTCGATTTTACACTGATACGcattcatttgtatttcatgTGCAGGAAACTACTtttgattatataataataataataataataataa

Function

symbol description
sptlc3 Predicted to enable serine C-palmitoyltransferase activity. Predicted to be involved in ceramide biosynthetic process and sphingosine biosynthetic process. Predicted to act upstream of or within biosynthetic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of serine C-palmitoyltransferase complex. Is expressed in EVL; gut; periderm; and pronephric duct. Orthologous to human SPTLC3 (serine palmitoyltransferase long chain base subunit 3).

NR:

description
PREDICTED: serine palmitoyltransferase 3

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0003824 catalytic activity molecular_function

KEGG:

id description
K00654 SPT; serine palmitoyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255052.1 True 3057 mRNA 0.44 12 13181337 13204232

Neighbor

gene id symbol gene type direction distance location
ism1 ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810 coding downstream 1884 13166439 ~ 13179453 (-)
kif16bb kif16bb,LOC107654912,LOC107600573 coding downstream 51625 13097691 ~ 13129712 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562,LOC107585510,LOC107724457,LOC107662813 coding downstream 479179 12691394 ~ 12702158 (-)
LOC122356399 LOC107675571,LOC107654995,LOC107585506,LOC107724409,LOC107600571 coding downstream 568655 12610172 ~ 12612682 (-)
si:dkey-76k16.5 LOC107675535,LOC107724429,LOC107585509,LOC107600570 coding downstream 587207 12591953 ~ 12594130 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding upstream 71467 13275699 ~ 13284622 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding upstream 186340 13390572 ~ 13405543 (-)
memo1 memo1,LOC107654980,LOC107705412 coding upstream 366558 13570790 ~ 13580096 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding upstream 475055 13679287 ~ 13684104 (-)
LOC122356826 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 coding upstream 523510 13727742 ~ 13735822 (-)
G93472 NA non-coding downstream 18610 13162489 ~ 13162727 (-)
G93471 NA non-coding downstream 18967 13162145 ~ 13162370 (-)
G93470 NA non-coding downstream 22900 13156930 ~ 13158437 (-)
G93460 NA non-coding downstream 75653 13105079 ~ 13105684 (-)
G93394 NA non-coding downstream 646269 12533986 ~ 12535068 (-)
LOC122356418 NA non-coding upstream 4178 13208410 ~ 13224536 (-)
LOC122356420 NA non-coding upstream 67046 13271278 ~ 13273141 (-)
G93513 NA non-coding upstream 143169 13347401 ~ 13347885 (-)
G93562 NA non-coding upstream 375295 13579527 ~ 13675111 (-)
LOC122356419 NA non-coding upstream 418534 13622766 ~ 13650733 (-)
LOC122356414 NA other downstream 584035 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 750559 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 887743 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 1382305 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 1533302 11643930 ~ 11648035 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 105720 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 316181 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 360190 13564422 ~ 13568025 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 488794 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 694026 13898258 ~ 13904702 (-)

Expression


Co-expression Network