ism1 (ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810)


Basic Information

Item Value
gene id ism1
gene name ism1,LOC107654990,LOC107739863,LOC107705406,LOC107662810
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13166439 ~ 13179453 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255068.1
CTTACTCTTTGGTTATTGACATTTTGGAATTCTAACAGCCCAGCTTGGGAAAAAAATCCTTGTTGTTTATAGGAAAATCAAGGACGGACACACATTTCAGCAGAAGAGCACAAATACACGCAACAGGATGGGCCTCTCTCCATCAGTTTACCCCCACCCCGTGTGTCAGAGGGTCTAGCCGGTCTGGAGAACAGATGTCAAGTCTCCTTCCATCTCCTTTGCTACCAACACAGCAATGTGCTGCTCCAAGAAAACATCTGTCTAAGCATTGACCATCAGCAAAAGGGGCCCCACGAATTGGCTCATCCGCCCTTTGAAACTCGCAAGACCGTGTGCCACTCTAACTGCAGAGGTATTCTGAGCCCTGCCAGATTCCTCTCTCTCCGTTTTACTTCTTGCTCAACAGCCCTAAATGAGATCATTTTGAAGCGGTACTGAGATGTGAATTGTACGACGCTCTGCATACCACCTTTTCATCGGTGCAGATTTGTATGCTTAATCAGAAAGGAGACAGTCCAAACAAACATCTTTCAAAGTTCAAGTGTTCTTGAAAAAAGACGCAAACCCCTTTGAGCCACGCAATACGCAAGTTCGGGACAAGAGCTACAGCATTTGTCGCACTTTTTTGATGTGGGCTCTCAGACGACCCATGaagaacaaacaaatgcaaatcgGGACACACCTCACCCCCCCCTCCGTCCTCACATTCCTGAAAGTGTGAAATTCGGAGGAGATAAAGACATTTGGTACGTGTTCTGCTGATGAGTGCGCTGGAGTATTGGCGCATGAAGGGTTAAATCGGTGGGGAGGGGAGGTGACAGCAAACCAAAAGAAGAGGGGGATATAAAAACACCAAAGGCTTCGTGGGCACGAGTCTGACTGTGTTTGTGCTGGGCTAAAGACACACAACGACAGAAGGgaacacacacggacacacgcTAGACCCGAGCGGTGGTGTCGTGTCTTGTTTGACAGCGCGCTTTTACGCAGAAGGTGTGTGTGGATACTCTTGCGCAAGAGCGGCTCGTACACCCTCCTGAGGACAGAGCTCAGATGAGTTAGTCAGAGGAGGAACTTTGGGTCTTCATCACACGGAAGATGGGCTCATAGTGAACTGCGCTTCATCCTTGAAGACACAGTGGCATTTGGAGAGGATGACAGCACTTTGCGCAATGCACCGGAGCGCGGCAACGTATCCAAAGTTTTATATTAGACGTGAAGGACAGACCACGAGGATTTGAAGTGGTTTGAACTGGAGACTTTgccgttttgttttatttttctttttaaagataaaGAAGAATGCTGCAGGTCCTCACAATTGCGTGCTTCTGCCAATGTGCCTGATTTACCTGCGCCCAAGTAAAACTCCAGTATTTCCTCAATGAAGAAGTAAAACTTATTACCTCGACGTACAAtctacttttgcattttttactgATGCTCAATGGAATGGTACACAGCTTTGGATTTTTGTGGGACttacttttttgctttttaaaggtaGTTCACGTTCTTTTTGGAAATCGGGATTATACCATTTTTGAGATAAGGAGCTATAGAACCCTCATTCATCTGATCGGTTTTCAAACGTGGAGTGATTGGGCTTCTTTGAGATCATTTCTAGCCAGTTACTCTTTTTCCCGTGAGTATTGCTCTTTTGGACCCCGAGGTGGCTCCGCAGTGGTGTGGCGGCTCCTCGTCCGCGGCGGATCCGGAGATCGGAGTGTCTGCAGCGGCAGGAGGCGGCAGCGGAAGCCCggcagcagcagcggcggcggcggcggcgcaGGGTCCTAAGAGTGCTCGAGTGAAGAGGATGGTGCGGCTGGCGGCGGAGCTGCTGTTGCTGTTGGGACTACTTCTTCTGACGTTACACATCACGGTGTTGAGGAGCAGCCCGCTACAGCACGGAAATGACACTGTAAGCTTGGAGCAGGTTGCGGAGAATAATGTCAATGCAGAAAGCAGCTCCTCTGTTCAGTTGGGGCCGGGTGACAGAAAGTCCAGAGTGCCTCATATTTCAGCGTCCCAGCCGTGGGTTCAGAGTCACGGGACAGGGGGCAGCCTGCAGAGAGACGGACCTGGAGCTTTTCTGCTGGACCTGCAGAACTTCCCTGATCTTTCCAAAGCTGATATAAATGGGCAGAATCCCAACATTCAGGTTACCATAGAAGTGGTGGACAGCCTTGAAGGTTCGGAGCCAGAGAAGGGAATACGCAAAGAAAACAAGCCTGGCTGGGCAGCTCCTAACTGGAGGAACTGGTGGCAGCGTTCGTCTTCCtcgtcctcatcctcatcttccGTGTCCACCCCGAAGGGTCCCGACGAACAGGATTACCCCTACGAGAGCAACACAGAGGACAGCAACTTCCTCAAACCGCTCGGGGACTGGGAGCGAAGAGCGTCTGCTGGCACAGGAAGCAGATCCCAGACCGAATACGACTACATAGATGGTGATGGTGACTGGAGTGGTTGGTCACCATGCAGCGTATCCTGTGGAAATGGTAACCAGAAGCGGACCAGGTCATGCGGCTATGCCTGCACAGCCACTGAGTCACGGACGTGTGACATGCCCAGCTGCCCAGGGATTGAAGATGCTTTCAAGACGGCAGCGACAGAAGTCAGTCTTCTCGCCGGCACTGAAGAGTTTAATGCAACAGAACTCTTTGGAGTCGATACAGACAGCTGCGAGCGTTGGATGAACTGCAAGAGCGAATTCCTCAAGAAATACATGAGCAAAGTGGCCAACGACCTACCCAGCTGCCCCTGCTTGTACCCAACCGAGGTGGCCTACAGCACCGCAGACGTCCACGACGCCACCACGAGACGCAACTTCCGCTGGAAAGACGCCAGCGGGCCAAAGGAAAAACTGGAGATCTACAAACCCACAGCTCGCTATTGCATCCGCTCCATGCTCACGCTGGAATCCACCACGCTGGCGGCCCAGCACTGCTGCTACGACGACAGCATGAAGCTCATCACCCGAGGCAAAGGGGCCGGGACGCCCAACCTCATCAGCACGGAGTTCTCCGCCGACCTGCACTACAAAGTGGACATCCTACCATGGATCATCTGCAAGGGCGACTGGAGTCGCTACAACCAGGCTCGACCTCCCAATAACGGACAGAAATGCGCAGAGAACCCTCAGGATGAGGACTACTACAAACAGTTCGAGGAGGCCAGAGAGTTCTGAGCTATGATGCCATGAACCTTCTAAAACAGAAGCAGAACTCGTTTTGAAAACTGGCTGTGTGTTTGAACAGGACTTGCTATGAGAAACAGACGGCACAGCCAACAACAAGCACAGAAGACCTTCATAAGGTTTCCCTCAGAACCTCTGGTTGGAGTGTTTTCATGGAAAGAACAATACCAAGTGACTCTTCGTGGTTCTCTTTGTATTGTTTATCTGTATTACTTGGGCTATCGGATTTTTTTATAAGGAGTAAAAGGGAAAACTAAAGGGAAGTCATATCAGGAATCACTCCTCCAATGATCAGATGACAGAGAGAGTTTCATGTGTTGTATTATGGCCAACAAGCAGTTGAAAATCCCCCACCTCAGGATTCTTGGACAGATGTAAGGATATCAGATACAATATTCAGGTTCCTGTGTAAACATGCGTATATTTGTCTAGTTGGTTGAACAGAGTTCTTATATTACATCCTGTTGTATCACTTTTCCTTTAttttgctaaaaacaaaacagtcctGCATAATCTTTGCAAAGTATTTATTGAGTCATAGTTATGTGTCGATGGTAGGGGTTTGTGCATATAGATGTATGGACACATTTTGAGTGCTAAATAAATAGTCCATGTCACATTAAAGGTCAATTGTCGCTGACTCTCAATGTGTTAAACTCAAAGGAAATTATCTGTAGAGGTCAAAGAGTCTTTCACCTCGTATCACAGTCAAATAAGATCTGTCTTCAGATATTAAACACTTTAAGCCAT

Function

symbol description
ism1 Acts upstream of or within angiogenesis and hemopoiesis. Predicted to be located in extracellular region. Is expressed in several structures, including margin; midbrain hindbrain boundary; midbrain hindbrain boundary neural keel; shield; and tail bud. Orthologous to human ISM1 (isthmin 1).

NR:

description
PREDICTED: isthmin-1

GO:

id name namespace
GO:0001525 angiogenesis biological_process
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24435 ISM; isthmin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255068.1 True 3955 mRNA 0.49 7 13166439 13179453

Neighbor

gene id symbol gene type direction distance location
kif16bb kif16bb,LOC107654912,LOC107600573 coding downstream 36727 13097691 ~ 13129712 (-)
flrt3 flrt3,LOC107705403,LOC107654987,LOC107600562,LOC107585510,LOC107724457,LOC107662813 coding downstream 464281 12691394 ~ 12702158 (-)
LOC122356399 LOC107675571,LOC107654995,LOC107585506,LOC107724409,LOC107600571 coding downstream 553757 12610172 ~ 12612682 (-)
si:dkey-76k16.5 LOC107675535,LOC107724429,LOC107585509,LOC107600570 coding downstream 572309 12591953 ~ 12594130 (-)
si:dkey-76k16.6 LOC107654998,LOC107585507,LOC107724435,LOC107675547,LOC107577850,LOC107600570 coding downstream 575086 12588944 ~ 12591353 (-)
sptlc3 sptlc3,LOC107654988,LOC107600566,LOC107662809,LOC107739864,LOC107705357 coding upstream 1884 13181337 ~ 13204232 (-)
btbd3b btbd3b,LOC107654989,LOC107705408,LOC107585513,LOC107739865,LOC107679136,LOC107600567 coding upstream 96246 13275699 ~ 13284622 (-)
LOC122356824 LOC107705409,LOC107600568,LOC107654911,LOC107683712 coding upstream 211119 13390572 ~ 13405543 (-)
memo1 memo1,LOC107654980,LOC107705412 coding upstream 391337 13570790 ~ 13580096 (-)
erlec1 erlec1,LOC107654972,LOC107679899 coding upstream 499834 13679287 ~ 13684104 (-)
G93472 NA non-coding downstream 3712 13162489 ~ 13162727 (-)
G93471 NA non-coding downstream 4069 13162145 ~ 13162370 (-)
G93470 NA non-coding downstream 8002 13156930 ~ 13158437 (-)
G93460 NA non-coding downstream 60755 13105079 ~ 13105684 (-)
G93394 NA non-coding downstream 631371 12533986 ~ 12535068 (-)
LOC122356418 NA non-coding upstream 28957 13208410 ~ 13224536 (-)
LOC122356420 NA non-coding upstream 91825 13271278 ~ 13273141 (-)
G93513 NA non-coding upstream 167948 13347401 ~ 13347885 (-)
G93562 NA non-coding upstream 400074 13579527 ~ 13675111 (-)
LOC122356419 NA non-coding upstream 443313 13622766 ~ 13650733 (-)
LOC122356414 NA other downstream 569137 12557077 ~ 12597302 (-)
tmem234 tmem234,LOC107675523,LOC107576456 other downstream 735661 12429197 ~ 12430778 (-)
vti1b vti1b,LOC107655020,LOC107705385,LOC107724223,LOC107675543 other downstream 872845 12278454 ~ 12293594 (-)
utp25 diexf,LOC107668835,LOC107707040,LOC107675582,LOC107757128 other downstream 1367407 11771428 ~ 11799032 (-)
six1a six1a,six1,LOC107588725,LOC107675533,LOC107708210,LOC107668775,LOC108434988 other downstream 1518404 11643930 ~ 11648035 (-)
LOC122356823 LOC107654911,LOC107705409,LOC107600568,LOC107683712 other upstream 130499 13309952 ~ 13325051 (-)
LOC122356403 jag1,jag1b,LOC107739890,LOC107602913,LOC107655002,LOC107585528,LOC107654982,LOC107602937,LOC107739866,LOC107585514,LOC107705359,LOC107683089,LOC107683730 other upstream 340960 13520413 ~ 13558834 (-)
srd5a2b srd5a2b,LOC107739895,LOC107654923,LOC107683892,LOC107705374,LOC107602938 other upstream 384969 13564422 ~ 13568025 (-)
map3k4 map3k4,LOC107654971,LOC107705416,LOC107679660,LOC107739870 other upstream 513573 13693026 ~ 13718314 (-)
LOC122356386 LOC107654968,LOC107705418,LOC107602947,LOC107680458,LOC107739873 other upstream 718805 13898258 ~ 13904702 (-)

Expression


Co-expression Network