LOC122356401 (agpat4,LOC107739871,LOC107553196)


Basic Information

Item Value
gene id LOC122356401
gene name agpat4,LOC107739871,LOC107553196
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 13852587 ~ 13858805 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255075.1
CGCTCTCCAGTTAGCTCCATGCGATGAGACGGATCCTCTGCTACTAACCGCGCAAGGGAAAAAAGaGGATATAGCGGAGACTGGGGACGTCAAGACTGCATGATAAGGATGGGAATTGTTCAAGTGCTAAAAACTCAGTTGCTGTGCCATCTCATTATCTGTTACGTGTTCCTAGTCAGTGGATTCATTATCAACCTGCTGCAGCTCTGTACTCTACCACTGTGGCCCTTTAACAAGCAGCTCGCACGCAAGATCAACTGCAGATTGGGTTATTCCATTTCTAGCCaACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACAGAATGCACACTTTACACAGATCCAGAAAGCTATAAACTTTATGGCAAAGAGAATGCCATTGTTGTCCTTAATCATAATTTTGAGATCGATTTCATGACAGGCTGGACCTTCTGTGAGAGATTTGGCGTTTTAGGAAGCTCAAAGGTGTTGGCAAAAAAGGAACTTTCCTTTGTTCCTGTGATCGGCTGGATGTGGTACTTCCTAGAGATCGTCTTCTGCAAGAGGAAATGGGAAGAGGATCGCAAGACAGTAGTGCAAAGTCTGCACAACCTTCGGGATTACCCAGAAAACTTTTGGTTCCTGTTGCACTGTGAGGGCACACGCTTCACAGAAAAGAAGCACAAGATTAGTATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGGACCAAGGGCTTTTGTGTCACGGTCCAGAACCTCAGGGGAACGGTTACTGCTGTGTACGATTCTACACTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTACTCAACGGGAAAAAGTACCATGCTGATTTATATGTGAGGCGAATTCCTCTGGACACGATCCCAGAGGACGAGTCTGAATGTGCCGTCTGGCTTCACAAACTCTACCAGGAAAAAGATGAATTCCAAGAGCATTATAGACAGACAGGGCGTTTTCCGGGTCCCATTACAAGCCCTCCGCGTCGACCTTGGTCCCTGCTGAACTGGCTCTTCTGGGTTTGTTTGCTGGTCTACCCTCTCTGCATGTTACTTCTGCAGTTGCTGCTATCAGGATCCACCTTCACTGTCGTCTGTACATCGCTCTTCTGTCTAGCAGtgtcagTTGGTATCCGCTGGATGATCGGACAGACTGAAATTGACAAGGGTTCCAACTACGGAAATAAAGAGATGCAAATGAACAACAACTGAAACATCTACCGGGGCGACAAGATCAAGCTACTGAACGGTCGTGAGGGCATTTTCACAACAGAAACTGGCATTAGCCAAGTGAAACCTCTTTCATGAATGAAACTCGAGGAAGTTGCCACATAAAGAGTcgtttgaataatttaaaaacacttttctgttttgatttacatgtcaaggcttttttttttttttttttttttttt
>XM_043255076.1
TCTCGCGCGCTCTCCAGTTAGCTCCATGCGATGAGACGGATCCTCTGCTACTAACCGCGCAAGGGAAAAAAGaGGATATAGCGGAGACTGGGGACGTCAAGACTGCATGATAAGGATGGGAATTGTTCAAGTGCTAAAAACTCAGTTGCTGTGCCATCTCATTATCTGTTACGTGTTCCTAGTCAGTGGATTCATTATCAACCTGCTGCAGCTCTGTACTCTACCACTGTGGCCCTTTAACAAGCAGCTCGCACGCAAGATCAACTGCAGATTGGGTTATTCCATTTCTAGCCaACTGGTGGCATTGTTGGAGTGGTGGTCTGGGACAGAATGCACACTTTACACAGATCCAGAAAGCTATAAACTTTATGGCAAAGAGAATGCCATTGTTGTCCTTAATCATAATTTTGAGATCGATTTCATGACAGGCTGGACCTTCTGTGAGAGATTTGGCGTTTTAGGAAGCTCAAAGGTGTTGGCAAAAAAGGAACTTTCCTTTGTTCCTGTGATCGGCTGGATGTGGTACTTCCTAGAGATCGTCTTCTGCAAGAGGAAATGGGAAGAGGATCGCAAGACAGTAGTGCAAAGTCTGCACAACCTTCGGGATTACCCAGAAAACTTTTGGTTCCTGTTGCACTGTGAGGGCACACGCTTCACAGAAAAGAAGCACAAGATTAGTATGGAGGTGGCAGAGAAGAAAGGTCTCCCCAAACTCAAGTACCACCTTCTACCTCGGACCAAGGGCTTTTGTGTCACGGTCCAGAACCTCAGGGGAACGGTTACTGCTGTGTACGATTCTACACTTAATTTCAGAAACAACGAAATGCCAACTTTACTAGGGGTACTCAACGGGAAAAAGTACCATGCTGATTTATATGTGAGGCGAATTCCTCTGGACACGATCCCAGAGGACGAGTCTGAATGTGCCGTCTGGCTTCACAAACTCTACCAGGAAAAAGATGAATTCCAAGAGCATTATAGACAGACAGGGCGTTTTCCGGGTCCCATTACAAGCCCTCCGCGTCGACCTTGGTCCCTGCTGAACTGGCTCTTCTGGGTTTGTTTGCTGGTCTACCCTCTCTGCATGTTACTTCTGCAGTTGCTGCTATCAGGATCCACCTTCACTGTCGTCTGTACATCGCTCTTCTGTCTAGCAGcagACCGTATAGGTGCTAGAGCAtgtcagTTGGTATCCGCTGGATGATCGGACAGACTGAAATTGACAAGGGTTCCAACTACGGAAATAAAGAGATGCAAATGAACAACAACTGAAACATCTACCGGGGCGACAAGATCAAGCTACTGAACGGTCGTGAGGGCATTTTCACAACAGAAACTGGCATTAGCCAAGTGAAACCTCTTTCATGAATGAAACTCGAGGAAGTTGCCACATAAAGAGTcgtttgaataatttaaaaacacttttctgttttgatttacatgtcaaggcttttttttttttttttttttttttt

Function

symbol description
agpat4 Predicted to enable 1-acylglycerol-3-phosphate O-acyltransferase activity. Predicted to be located in endoplasmic reticulum membrane. Predicted to be integral component of membrane. Predicted to be active in endomembrane system and mitochondrial outer membrane. Orthologous to human AGPAT4 (1-acylglycerol-3-phosphate O-acyltransferase 4).

NR:

description
PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase delta-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016746 transferase activity, transferring acyl groups molecular_function

KEGG:

id description
K13523 AGPAT3_4; lysophosphatidic acid acyltransferase / lysophosphatidylinositol acyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255075.1 False 1445 mRNA 0.45 9 13852594 13858805
XM_043255076.1 True 1475 mRNA 0.46 10 13852587 13858805

Neighbor

gene id symbol gene type direction distance location
LOC122356827 LOC107736840,LOC107664175,LOC107568695,LOC107747274 coding upstream 51348 13798911 ~ 13801239 (+)
kcnk1b kcnk1b,kcnk1,LOC107705375,LOC107654970,LOC107680317,LOC107739872,LOC107553189,LOC108415485 coding upstream 125563 13721418 ~ 13727024 (+)
agpat4 agpat4,LOC107739871,LOC107553196,LOC107089284 coding upstream 160238 13686039 ~ 13692349 (+)
gpr75 gpr75,LOC107602942,LOC107654975,LOC107683917,LOC107705414,LOC107553188,LOC107739897 coding upstream 173955 13675767 ~ 13678632 (+)
psme4a psme4a,LOC107602941,LOC107654976,LOC107679520,LOC107739869 coding upstream 177539 13650908 ~ 13675048 (+)
mfsd2aa mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 coding downstream 59393 13918198 ~ 13929237 (+)
si:ch211-67f13.7 LOC107602918 coding downstream 71818 13930623 ~ 13936869 (+)
LOC122356869 ttc9,LOC107602957,LOC107553202,LOC107654962,LOC107739879 coding downstream 153444 14012249 ~ 14015870 (+)
cnih1 cnih1,LOC107736564,LOC107683416,LOC107553211,LOC106611446 coding downstream 332377 14191182 ~ 14196252 (+)
LOC122356518 LOC107705440,LOC107654948,LOC107736540,LOC107682154,LOC100538248 coding downstream 342045 14200850 ~ 14209385 (+)
G93512 NA non-coding upstream 504549 13346861 ~ 13348038 (+)
LOC122357146 NA non-coding upstream 635830 13216658 ~ 13216757 (+)
G93485 sptlc3,LOC107705357,LOC107662809,LOC107654988,LOC107600566 non-coding upstream 660792 13187585 ~ 13191795 (+)
G93474 NA non-coding upstream 688274 13164037 ~ 13164313 (+)
G93306 NA non-coding upstream 1250046 12602191 ~ 12602541 (+)
G93649 NA non-coding downstream 3246 13862051 ~ 13862660 (+)
G93659 LOC107654964,LOC107680818,LOC107602919,LOC107705424,LOC107553200,LOC107739876 non-coding downstream 86525 13945330 ~ 13950605 (+)
G93592 NA non-coding downstream 172577 14031382 ~ 14161320 (+)
G93685 LOC107553176,LOC107654957,LOC107705429,LOC107602958 non-coding downstream 231720 14090525 ~ 14091232 (+)
G93723 NA non-coding downstream 366178 14224983 ~ 14227711 (+)
LOC122356417 mfsd2aa,LOC107654966,LOC107705421,LOC107602949,LOC107739898 other upstream 91853 13749135 ~ 13760734 (+)
tasp1 tasp1,LOC107705405,LOC107654993,LOC107600565,LOC107662811,LOC107585512,LOC107739887 other upstream 694147 13134473 ~ 13158440 (+)
mgme1 mgme1,LOC107675546,LOC107654997,LOC107585523 other upstream 1263589 12586886 ~ 12588998 (+)
G93296 rrbp1 other upstream 1277375 12571631 ~ 12575212 (+)
jag2a jag2a,LOC107654986,LOC107675567,LOC107724379,LOC107585503,LOC107705348,LOC107600569 other upstream 1317516 12502385 ~ 12535071 (+)
gmfb gmfb,LOC107705437,LOC107553212,LOC107602964,LOC102779377 other downstream 326510 14185315 ~ 14188993 (+)
frmd6 frmd6,LOC107654939,LOC107683538,LOC107736757,LOC107726597 other downstream 495310 14354115 ~ 14369557 (+)
LOC122357077 zgc:153049,LOC107747287,LOC107736842,LOC107665562,LOC107664273,LOC107573610,LOC107553186 other downstream 1247653 15106458 ~ 15226722 (+)
fam135a LOC107747270,LOC107665594,LOC107736843,LOC107664195,LOC107564672 other downstream 1396269 15255074 ~ 15275234 (+)
tarbp1 tarbp1,si:dkey-85a20.4,LOC107736847,LOC107564676,LOC107683215 other downstream 1437044 15295849 ~ 15314656 (+)

Expression


Co-expression Network