sfxn5a (sfxn5a,sfxn5,LOC107567846,LOC107733701,LOC107690191,LOC108262907,LOC100691010)


Basic Information

Item Value
gene id sfxn5a
gene name sfxn5a,sfxn5,LOC107567846,LOC107733701,LOC107690191,LOC108262907,LOC100691010
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 5198874 ~ 5212864 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255099.1
TTAGAAAACAACATTACCCAAAATGCATTGATACGGATGACTCGACCACTTTGAGGGAACTCTGCGTAACTTTGAGATCCCGGTGAGGTCCCGGTATAACGGCCGTCGAGCTCGCTGTTCGTCTGTGATCACCTGCCATGCCTGCACCGACTGAGTCCCCTCCGTTTAGACTCGGCGAGTCTCGGTTTGATCAGGGTGCATTTCTCGGCAGACTAAGACACTTCCTGGACGTGATCGACCCTCGCACGCTCTTTGTATCGGAGAAACGTTTAAATGAATGCGTGAAACTCTTGGATCAGTTCAAAAACGGCGCTCTTCCTCCAGGTGTGACTGATGTGCAGCTTTGGGAGGCACAGAAGATTAAACAGGCCATCATCCATCCAGACACGGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTTTGTGCCCTTTGGTACTCCAGTGGTCGTAGGCCTCCTTTTACCCAATCAGACATTTGCTTCCACCGTCTTCTGGCAGTGGCTGAACCAGAGCCACAATGCCTGCGTCAACTACTGCAACCGCAATGCAACTAAGccCACACCGATGtcaaagtttttccagggttacctcGGTGCAGTCAGCAGTGCGGTCACTATTGCAGTGGGGCTGAATCTTCTTATTAAAAGAGCTGAGCATTTCAGTCCAGCCACAAGAATCCTGGTCCAGCGGTTCATCCCGTTCCCTGCTGTTGCAACTGCAAACGTGTGTAATGTGTTGCTGATGCGCCACACTGAGCTGTCGGAGGGCATCAGCGTGCTGGACGACAAAGGCAATGTGGTGGGCACCTCAAAGCTGGCTGCCAGGCATGCTCTGATGGAGACGTCCCTGACTCGTGTCGTGCTGCCCATGCCTGTTCTCCTGCTGCCGCCTTTAATAATGGCCCTGCTGGAGAGGCTCCCTCTGCTGCGGAAGCGGCCTCGTCTCGGGCTGCCCGTTCACAGCGTGGTGTGTCTCTGCGCGTTCGGCCTAGCGCTGCCTGTTGCCATCAGCCTGTTCCCCCAAAACAGTCAGATCCACGCGTCGGAGCTGGAGCCAGAGATCGCTGCTGCGACAGAGTGCCAGATCCTGACCTACAACAAGGGACTTTAACCGGTCGGAATGCTCCACGCTGTCCTTCACGGTGCAACTATAATGTGAAC
>XM_043255100.1
CCCGTTAGAAAACAACATTACCCAAAATGCATTGATACGGATGACTCGACCACTTTGAGGGAACTCTGCGTAACTTTGAGATCCCGGTGAGGTCCCGGTATAACGGCCGTCGAGCTCGCTGTTCGTCTGTGATCACCTGCCATGCCTGCACCGACTGAGTCCCCTCCGTTTAGACTCGGCGAGTCTCGGTTTGATCAGGGTGCATTTCTCGGCAGACTAAGACACTTCCTGGACGTGATCGACCCTCGCACGCTCTTTGTATCGGAGGCCATCATCCATCCAGACACGGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTTTGTGCCCTTTGGTACTCCAGTGGTCGTAGGCCTCCTTTTACCCAATCAGACATTTGCTTCCACCGTCTTCTGGCAGTGGCTGAACCAGAGCCACAATGCCTGCGTCAACTACTGCAACCGCAATGCAACTAAGccCACACCGATGtcaaagtttttccagggttacctcGGTGCAGTCAGCAGTGCGGTCACTATTGCAGTGGGGCTGAATCTTCTTATTAAAAGAGCTGAGCATTTCAGTCCAGCCACAAGAATCCTGGTCCAGCGGTTCATCCCGTTCCCTGCTGTTGCAACTGCAAACGTGTGTAATGTGTTGCTGATGCGCCACACTGAGCTGTCGGAGGGCATCAGCGTGCTGGACGACAAAGGCAATGTGGTGGGCACCTCAAAGCTGGCTGCCAGGCATGCTCTGATGGAGACGTCCCTGACTCGTGTCGTGCTGCCCATGCCTGTTCTCCTGCTGCCGCCTTTAATAATGGCCCTGCTGGAGAGGCTCCCTCTGCTGCGGAAGCGGCCTCGTCTCGGGCTGCCCGTTCACAGCGTGGTGTGTCTCTGCGCGTTCGGCCTAGCGCTGCCTGTTGCCATCAGCCTGTTCCCCCAAAACAGTCAGATCCACGCGTCGGAGCTGGAGCCAGAGATCGCTGCTGCGACAGAGTGCCAGATCCTGACCTACAACAAGGGACTTTAACCGGTCGGAATGCTCCACGCTGTCCTTCACGGTGCAACTATAATGTGAAC
>XM_043255101.1
TGACCCGTTAGAAAACAACATTACCCAAAATGCATTGATACGGATGACTCGACCACTTTGAGGGAACTCTGCGTAACTTTGAGATCCCGGTGAGGTCCCGGTATAACGGCCGTCGAGCTCGCTGTTCGTCTGTGATCACCTGCCATGCCTGCACCGACTGAGTCCCCTCCGTTTAGACTCGGCGAGTCTCGGTTTGATCAGGGTGCATTTCTCGGCAGACTAAGACACTTCCTGGACGTGATCGACCCTCGCACGCTCTTTGTATCGGAGAAACGTTTAAATGAATGCGTGAAACTCTTGGATCAGTTCAAAAACGGCGCTCTTCCTCCAGGTGTGACTGATGTGCAGCTTTGGGAGGCACAGAAGATTAAACAGGCCATCATCCATCCAGACACGGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTTTGTGCCCTTTGGTACTCCAGTGGTCGTAGGCCTCCTTTTACCCAATCAGACATTTGCTTCCACCGTCTTCTGGCAGTGGCTGAACCAGAGCCACAATGCCTGCGTCAACTACTGCAACCGCAATGCAACTAAGccCACACCGATGtcaaagtttttccagggttacctcGGTGCAGTCAGCAGTGCGGTCACTATTGCAGTGGGGCTGAATCTTCTTATTAAAAGAGCTGAGCATTTCAGTCCAGCCACAAGAATCCTGGTCCAGCGGTTCATCCCGTTCCCTGCTGTTGCAACTGCAAACGTGTGTAATGTGTTGCTGATGCGCCACACTGAGCTGTCGGAGGGCATCAGCGTGCTGGACGACAAAGGCAATGTGGTGGGCACCTCAAAGCTGGCTGCCAGGCATGCTCTGATGGAGACGTCCCTGACTCGTGTCGTGCTGCCCATGCCTGTTCTCCTGCTGCCGCCTTTAATAATGGCCCTGCTGGAGAGATCCACGCGTCGGAGCTGGAGCCAGAGATCGCTGCTGCGACAGAGTGCCAGATCCTGACCTACAACAAGGGACTTTAACCGGTCGGAATGCTCCACGCTGTCCTTCACGGTGCAACTATAATGTGAAC
>XM_043255102.1
TTGACCCGTTAGAAAACAACATTACCCAAAATGCATTGATACGGATGACTCGACCACTTTGAGGGAACTCTGCGTAACTTTGAGATCCCGGTGAGGTCCCGGTATAACGGCCGTCGAGCTCGCTGTTCGTCTGTGATCACCTGCCATGCCTGCACCGACTGAGTCCCCTCCGTTTAGACTCGGCGAGTCTCGGTTTGATCAGGGTGCATTTCTCGGCAGACTAAGACACTTCCTGGACGTGATCGACCCTCGCACGCTCTTTGTATCGGAGAAACGTTTAAATGAATGCGTGAAACTCTTGGATCAGTTCAAAAACGGCGCTCTTCCTCCAGGTGTGACTGATGTGCAGCTTTGGGAGGCACAGAAGATTAAACAGGCCATCATCCATCCAGACACGGGAGAAAAGATCCCCATGCCCTTTCGCATGTCAGGTTTTGTGCCCTTTGGTACTCCAGTGGTCGTAGGCCTCCTTTTACCCAATCAGACATTTGCTTCCACCGTCTTCTGGCAGTGGCTGAACCAGAGCCACAATGCCTGCGTCAACTACTGCAACCGCAATGCAACTAAGccCACACCGATGtcaaagtttttccagggttacctcGGTGCAGTCAGCAGTGCGGTCACTATTGCAGTGGGGCTGAATCTTCTTATTAAAAGAGCTGAGCATTTCAGTCCAGCCACAAGAATCCTGGTCCAGCGGTTCATCCCGTTCCCTGCTGTTGATCCACGCGTCGGAGCTGGAGCCAGAGATCGCTGCTGCGACAGAGTGCCAGATCCTGACCTACAACAAGGGACTTTAACCGGTCGGAATGCTCCACGCTGTCCTTCACGGTGCAACTATAATGTGAACGGAAAAATGCAAAGCGTCATTACAGATTTTGATTGCGTCTCACTGGATTGCTCCcgctgtgtgtgaatgtgaattCTCTCTGAgccacacacagagacagactcACACCAGCGCTAATCATCCTCTTTCCGTGCGTTTGAACGTGGAAGTCGCAAATAGAGGATTTCAGGATATTTACAGCGGCGAAAACAAGTATTCTTTTGAATTTCCCCGTGAtgtcatttaaatttacataattacCAGCCTTCCCATTCAAGCGGCTCTGTATTATCTGACTACaaatgactgaaaataaatgtttaccaagtaattgttttaaaacaatgaataaacaatcggttttattttaaa

Function

symbol description
sfxn5a Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Predicted to act upstream of or within amino acid transport; ion transport; and transmembrane transport. Predicted to be located in membrane and mitochondrion. Predicted to be integral component of membrane. Predicted to be integral component of mitochondrial inner membrane. Orthologous to human SFXN5 (sideroflexin 5).
sfxn5 Predicted to enable citrate transmembrane transporter activity. Predicted to be involved in citrate transport and mitochondrial transmembrane transport. Located in mitochondrion.

NR:

description
PREDICTED: sideroflexin-5-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255099.1 False 1165 mRNA 0.54 14 5198882 5212513
XM_043255100.1 False 1064 mRNA 0.56 12 5198878 5212513
XM_043255101.1 False 1054 mRNA 0.53 13 5198875 5212513
XM_043255102.1 True 1204 mRNA 0.48 11 5198874 5212864

Neighbor

gene id symbol gene type direction distance location
LOC122356791 LOC107733689,LOC107690150,LOC107582530,LOC107708385,LOC107678491,LOC106918274,LOC103144266 coding upstream 62644 5132489 ~ 5136230 (+)
mrps26 LOC107678578,LOC107690153,LOC107582565,LOC107733693,LOC107708396,LOC107567847 coding upstream 67427 5129847 ~ 5131447 (+)
si:dkey-33c12.3 si:dkey-33c12.3,LOC107582528,LOC107733690,LOC107690152,LOC107567853,LOC107678577 coding upstream 70017 5125547 ~ 5128857 (+)
LOC122356713 LOC107567852,LOC107678576,LOC107708478 coding upstream 73482 5118830 ~ 5125392 (+)
si:dkey-33c12.4 LOC107690151,LOC107733685,LOC107582527,LOC107708477,LOC107567855,LOC107678591 coding upstream 92942 5098574 ~ 5105932 (+)
cdc25b LOC107690144,LOC107733779,LOC107582534,LOC107567856,LOC107718443,LOC107678573 coding downstream 40037 5252901 ~ 5259209 (+)
gfra4a gfra4a,gfra4,LOC107693311,LOC107747595,LOC107695017,LOC107568637,LOC107733662 coding downstream 131662 5344526 ~ 5431348 (+)
ky LOC107666377,LOC107747591,LOC107556906,LOC107733664,LOC107695013,LOC107568638 coding downstream 354638 5567502 ~ 5574433 (+)
fgfr3 fgfr3,LOC107733743,LOC107666479,LOC107556915 coding downstream 495657 5708521 ~ 5740890 (+)
nsd2 LOC107747575,LOC107666517,LOC107556918,LOC107733764 coding downstream 582376 5795240 ~ 5807876 (+)
G90905 NA non-coding upstream 162758 5035359 ~ 5036116 (+)
G90879 LOC107733683,LOC107690158,LOC107582524,LOC107678493,LOC107708465 non-coding upstream 185212 5003410 ~ 5013662 (+)
G90888 NA non-coding upstream 233859 4964702 ~ 4965015 (+)
G90700 NA non-coding upstream 727130 4471065 ~ 4471744 (+)
G90659 socs5b,socs5,LOC107727375,LOC107586485,LOC107699300,LOC107708402 non-coding upstream 733006 4459639 ~ 4465868 (+)
G90957 NA non-coding downstream 184631 5397495 ~ 5435571 (+)
G90985 NA non-coding downstream 288778 5501642 ~ 5505510 (+)
G90997 NA non-coding downstream 310881 5523745 ~ 5525112 (+)
G91003 LOC107556907,LOC107666376 non-coding downstream 327628 5540492 ~ 5597345 (+)
G91124 NA non-coding downstream 551842 5764706 ~ 5765211 (+)
rab11fip5a LOC107733767,LOC107690145,LOC107582533 other upstream 470 5177718 ~ 5198404 (+)
si:ch73-49p17.1 LOC107678601,LOC107727381,LOC107589548,LOC107708422 other upstream 200883 4992153 ~ 4997991 (+)
si:ch211-250c4.5 LOC107727386,LOC107699305,LOC107586489,LOC107708409,LOC107678597 other upstream 503032 4561648 ~ 4695842 (+)
G90660 epcam,LOC107699293,LOC107727368,LOC107586477,LOC107707148,LOC107678540,LOC107707150,LOC108422531,LOC107723711 other upstream 844943 4182499 ~ 4353931 (+)
pkdcca pkdcca,LOC107669579,LOC107739483,LOC107718010,LOC107695038,LOC107590011,LOC107586469 other upstream 1366324 3809053 ~ 3832550 (+)
ap5s1 ap5s1,LOC107693289,LOC107678575,LOC107718444,LOC107567857,LOC107582535,LOC107733789 other downstream 48172 5261036 ~ 5271247 (+)
lamtor3 lamtor3 other downstream 738353 5951217 ~ 5952517 (+)
commd8 commd8,LOC107666485,LOC107556927,LOC107733703,LOC107585230 other downstream 769654 5982518 ~ 5986979 (+)
akt3a akt3a,akt3,LOC107587843,LOC107666464,LOC107585250,LOC107666430,LOC103024575,LOC108422057,LOC106589689 other downstream 1041739 6254603 ~ 6358017 (+)
LOC122356719 LOC107585299,LOC107733725,LOC107698728,LOC107711427,LOC107666365,LOC107711426,LOC107585285,LOC107733707 other downstream 1880280 7093144 ~ 7147218 (+)

Expression


Co-expression Network