slit1a (slit1,slit1a,LOC107699140,LOC107753728,LOC107705008,LOC107565895)


Basic Information

Item Value
gene id slit1a
gene name slit1,slit1a,LOC107699140,LOC107753728,LOC107705008,LOC107565895
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2093475 ~ 2146596 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255117.1
GAACTGCTATTTGTAGATCCTTGTGATGGATTactgccgtgtgtgtgtgtaagagaggaTAGAGATTTTTTGTTCCTGTGCTGTTCCGTATCCCCCTTTCTTCAGGCAGACGGCAGAGCGCCGCTGAGCAAAGCAGTGAGGCAGCAGAAGAAGCGGCAAAGCAACTCCTCCAAGAAGAGGCAAAGGAGAGTTTGTGCACAAAGTGAGAGCGCAGGagctgctttttttctctctctcctcgcgTTCTGGAAACGGGAGAGCACTAGCCCGGGCGCTCGCGTCTCAAAGCGTGCGAGATCATGCCTGCGAGAGGAGGACACTCTGTAGGCAGGCTGGTGGAGGCGTGCATCCGGATACTGCTGCTGTGCAAGGCTGCCACGGCGTGCCCTGCGCTCTGCACTTGCAGCGGCACCACAGTGGACTGCCACGGGCTGGGGCTCAAGACCATGCCCAGGAACATACCCCGAAACACGGAGCGGCTggAACTGAATGGAAACAATCTCACGCGCATCAACAGAAACGACTTTTCTGGACTCAAGTATCTTCGAGTTTTGCAGCTGATGGAGAACCAGATTGGGACTGTGGAGCGCGGCGCGTTTGATGACATGAGAGAGCTGGAGAGACTACGTCTGAACAGAAACCAGCTTCACCAGCTTCCAGAGCTCCTGTTTCAGAAGAACGCGGCTCTGTCCAGACTAGACTTGAGTGAgaacttcatccaggcgattcCTCGAAAGGCCTTCAGAGGAGCGACGGACATCAAGAACCTACAGCTAGACAAGAATCACATCAGCTGCATCGAGGACGGAGCTTTCCGCGCTCTACGTGGACTTGAAGTATTAActctgaacaacaacaacatcagcaGCATCCCAGTGTCCAGCTTCAACCACATGCCCAAGCTCAGGACCTTCCGTTTACACTCCAACAACCTGAACTGCGACTGTAATCTGTCCTGGTTGTCTCAGTGGTTGCGCGAGCGGCCAACCATCGGTCTGTTCACCCAGTGCAGCGCTCCGGCTCCGTTACGAGGACTCAATGTAGCCGAGGTCCAGAAACACGAATTCAGCTGTTCAGGTCAGTCTGAAGACGCAGCTGCTCAGTCGTGTAGTTTTGCCACGGGCTCGTGTCCGGCCGCCTGCACCTGCAGTAATAACATCGTGGACTGCAGAGGGAAAGGTCTGACGGCGATCCCGGCCAACCTGCCCGACAGCATGGCAGAGATACGACTGGAGCAAAACAGCATCAAATCCATCCCTCCAGGAGCGTTTTCTCCTTATAAGAAACTGCGCAGAATaGATCTCAGCAACAACCAGATTTCTGAGCTTGCTCCTGATGCCTTCCAGGGCCTGCGCTCCCTGAACtcactGGTTCTGTACGGCAACAAGATCACTGATCTGCCCAAAGGAGTGTTTGACGGACTCTACACCCTCCAGCTGCTCCTTCTGAACGCAAACAAGATCCACTGCCTTCGTGCCAACACCTTTCAGGACCTGCAGAATCTCTCCCTTCTTTCTTTATATGACAACAAAATCCAGACGCTGGCCAAGGGCACCTTCACCTCGCTGCGCGCCATCCAGACCCTTCATCTGGCTCAGAATCCCTTCATCTGTGACTGTAATCTGAAGTGGCTGGCCGATTACCTGCGCTCCAACCCCATCGAGACCAGCGGTGCGCGCTGCACCAGCCCTCGCCGGCTCGCCAACAAACGCATCGGCCAGATCAAGAGCAAGAAGTTCCGCTGCTCCGCCAAAGAGCAGTACGTCATCccagGAACGGAGGACACCAGGCTGAGCAGCGACTGTAATAATGACCCCGTCTGTCCGGCCAAGTGCCGCTGCGAGTCCAATGTAGTGGACTGCTCCAATCTACGGCTCAACCGCATCCCTGAACACATCCCAGCATCCACCACTGAACTGCGTCTCAACAATAACGAGATCACGGCGATAGAGGCCACAGGTGCCTTCAAGACACTGTCTCAcctgaagaaaatAAACCTGAGCAACAATAAGATCTCTGAGATAGAGGACGGGGCGTTTGAGGGGGCGTCTTCGGTCAACGAGCTGCACCTGACGGCCAACCAGCTGGATTCTGTGCACAGCGGGATGTTCAGAGGAATGGACGGCCTGCGCATGCTAATGCTGCGCAACAATCGCATCAACTGCATTCACAACAACAGTTTCACAGGCTTGCACAACGTCCGTCTGCTGTCGCTCTACGACAACACGCTGACCACCATCACACCCGGAGCCTTCGACACGCTGCAGAGCCTCTCAACCCTAAACCTATTGGCCAACCCGTTCAACTGTAACTGTCACCTGGCATGGCTGAGCAGCTGGCTGAGGAACCGTAAGATCGTGACGGGAAACCCTCGCTGCCAGCGTCCGGCGTTCCTCAAAGAGATCCCTCTGCAGGACGTGGCCTTACCAGACTTCCGCTGCCAGGAGGATCAAGAGGAGGCGAGCTGTGCTCCACCCGTCCAGTGTCCCTCAGAGTGCACCTGCCTGGAGACCGTGGTCCGCTGCAGCAACAAACACCTGCACGTCTTACCCAAAGGAATCCCGCGCAACGTCACCGAGCTGTATCTGGATGGAAACCAGTTCAGCATGGTGCCGAAAGAGCTGTCCAACTTCAAAAACCTGCAGCTCGTAGACCTGAGTAACAACAAAATCAGCTCTCTGACCAACTCTTCGTTTGCCAACATGAGTCAGCTGACCACCCTGATCCTGAGTTATAACGCTCTGCGCTGTATCCCGACTCTGGCGTTTGGAGGCCTTCAGTCGCTCCGCTTGCTGTCTCTGCATGGTAATGACGTCTCTGAACTGCCTGATGGGATCTTCACCGACGCTGCATCGCTGTCACATCTGGCGATTGGTGCGAACCCTCTGTACTGTGACTGCCGCCTGCGCTGGCTCTCTGACTGGGTGAAGACGGGCTACAAGGAGCCAGGCATCGCCCGCTGCGCTGGACCACACGGCATGGAGGGAAAACTACTGCTCACCACCCCAGCCAAGAGATTTGAGTGTCAAGgtgaaGTGGACACTGCTATACTGGCGAAGTGTAACCCGTGCATGTCTAAGCCCTGTCTGAACCACGGCAGCTGCGAGGCCGATCTGACAGATGAATACAGGTGTCGCTGTTCAGAGGGCTTTAAGGGCAAGAACTGTGAGATGCCGCTCAACGCTTGCGTCAATGAGCCCTGCAAGAACGGAGGAACGTGCCACATGTCTGGAGAAGAGGATGAGGGCTTTAGTTGTTCGTGTGCTGCAGGCTTTGAAGGTGCCACATGTGACATCGACATAGACGAGTGTAAAGACAACGACTGTCAGAACGGAGCGACCTGCATAGATGGCATCAACAATTACACCTGTTTATGTGCCCCTTTTTACACAGgggAGATGTGTGAGGATATGGAGGACATGTGTGCTTCAACTCGCAGTCCTTGCAAACACCAGTCCACCTGCTTCATCACAGTCACTGGCCCAAAGTGTATATGCGCCCCTGGATATGTGGGTGACGACTGCAGTGTGAACTATGACGACTGTAAGGAGCACAGGTGTCAGAATGGAGCACAGTGTTTGGACGAGGTTAACGGATACTCCTGTGTTTGTCCCAAGGGCTACAGTGGGCCGCTTTGTGAAGTCCCATCTACTCCACGCTCTCTCTGCGAGCTGGCCGACTGTCAAAACAATGCCCCCTGTGTGGAACGCGGGGGCCATGCACTCTGTCAATGCCTGGAAGGGTTTGGTGGACCACGCTGTGAAAAGTTGGTCAGTGTCAACTTTGTGGACAGAGACTCCTATCTGCTACTGAGTGACCTGAAGAATTGGCCCCAGGCTAACATCACTCTACAGGTGTCCACAGCAGAAGACAACGGCATTCTTCTGTACAATGGAGACAATGACCACATTGCTGTGGAGCTTCATGAAGGTCATGTTAAAGTCAGCTATGACCCGGGCAGCCAACCAAGTCATGCAATCTACAGTACTGAAACCATCAATGATGGTCAGTTCCACACTGTAGAACTGGTGACGTTTGACCAGATGGTGAACCTTTCCATAGATGGTGGTATCCCAACTACTATGGACAGCTTTGGGAAAGTGCAGCCCCTGAGGGGGGAAGCTCCACTATATGTGGGAGGCATGCCGGTGAGCGTCCACCCCACAGCTCCTCGCATCTGGCAGATCCAAAACAGCTCCAGTTTTCATGGCTGCATTCAAAACCTTTACATCAATAATGAGCTACAAGACTTTACCAAAACCCAAATGAAGCCTGGTGTTGTGCCCGGATGTGAGCCCTGCCGAAAGATATACTGCCTCCATGGCATCTGCCAACCCAACACGGCCATAGGCCCCATATGCCACTGCCAGCCCGGGTGGAGTGGGCAACACTGTGACCAGCCTTTGGCGAACCCCTGTCTGGGCAGCAAGTGTGTCCATGGGAGATGTATTCCCATGGACATGCAGTCATATCGCTGTGAATGCCAGGAGGGTTTTCATGGAGCCCTGTGCAACCAGCAGGAAGAGCTCTTCAATCCATGCAGAAAGCTTCAATGCAAACACGGTCACTGTCAGATATCTGACACGGGAGATGCTTACTGTCATTGTGAGGTGGGCTACAGTGGAGAGTTATGCGACAAGGAGTCCGAGTGCCACGGTGAGCCAGTGCGGGACTTCTACCAGGTCCAGCGTGGTTACACCATCTGTCAGACCACACGCATGGTGTCATGGGTGGAGTGCAGTGGTGCCTGCGACACCGGCTCCTGCTGTGCCAGTCAAAGGATGAAGCGCAGGAAATACACTTTCGAGTGCAGCGATGGCACGTCCTTCAGCGAGGAGGTTGAAAAGACCATCAAGTGTGGCTGTGTGGGGTGCATGTAGAACACAACCACTAGCATCACCACCTCATCACAGTCTGACAGAACCGCAGAAAGAGCCATCACAAAAAGTCAACAGAAGTAGATTTCATCTTTCATTGGGTATACAGAGACATACCCCCCCCCACCACCCCAACCCTTTATATTTCCGCCACAGCCGAAATTCCAACCCCTTTTTGTCCTTTGGTAAGGTCTCAGAAAGGTAAAATAACACCAAGTCTGCTGAGAGGAAGGCGAGCGAGGTGGCCCCTGGCTTGTTTCAGCCCAAAAGCAGGACAGTAGTCAAGTATTAGAAGAAAATGATGGTCTTTTTGACTCTCTCTGCAGTGCAGGACGTGTATTTGAGCACATAAGGCTCCAAAATGGTGACGAAAGGAACATCCACATTTCCACCATGCCTGAATAAAACTATATGTATGATAAATGGAAGAATGCATCATCAGAGACATGCTGGTCAAATAAAACCAAGACGTGCATGGAACGACATGCTGTCTTACCAGATATTTCCAGTCATTTTGTGTTACGGGTGGCACACGGGACTCTTCCATGCGTCCCTGACCCAATTCCACTGCAAATATGACATCCTATATAAACGACATGGGGGCCAAAAATACCCAGAAGCCTTCCATGCGAACGTGTGAAGAGCTCTGCGGCGCTCCTGGTGCCATAACATAGAGTTACGTTGTTGGAGGGGAGCTTCTTTACTATGTCTTGACTTTCGATAGATCGAGACAGCTGAAGAAAATCAAAGTCCAATAAAAGGATCCATTCGATCTATTCCATATAGTGTTTTGTCATTCCATTACCTCAAACAGAGAACTCTACAGAATGTAAGGGAGAGCTGAAGTCAAGCGCTAGATAGATCTCATCGCACCGTTTTCTAAGATGCATGCTCATTGTCATGTGATGTCTGGATTGTGGTTAATATTAGTACTGCTGAGCAGAAAATAGAACATCGCTTATCGAAACACTGCTAAATATGCAACGCCACTGCAGTTTTTATATTGGTCAGTGTTGAAACTGTTTGAGGGGTACAATATGACTATGGGTTATGACCACAACACTGTACTCTGTACTCGTCGAAGTGACAATTCTCCCGCGGATGTAACCGTAACGATTTCCCAGATTCCACCAAGTTCTCTTTTTGATTCCTACAGTATTACCTCTGCAAGCTACTGCGTTCATGAAGGTTTGCAAATTGCCATGAACATCGTCCTAggattaaaacataaataagtgCAGTTTGgcttatttcatttaatttcggtgggtgtttattttttttcgcGTTGATTTCCTTTTCCTAACTCCCTAGACCTTCACTTTATACAGAAATGCTTAACAgattctaatatatatttgtatttcattttggtatagtatttttatatgttaaagAATAAATTTGTGTTTTCGGGATTTTACTATCAAACAGCAGTGTGAAATTCGGTAACttttggtgttttattcggTCATTGCTTATGCAGGCTACAGTGGTTTGAAACTGGCCAAAAGCATAGATAATTACTAGCCTATTAGCCTTATTGTAATAGGAGCCAGTGTCGATTTGTTTTGGAaggtttttttgggtttttttgattGTAAATGTTGTCTTCCATGTGAATaccacatttaaaatatctttgtggttgattttgtaattatttattttaagccagTCCAGATAGAAAGCTGAAATTTCATTTATGAGTATGCTTATTTTGAGTTGTAATAAAGCAGAGAGGAAAAAGAGGTCAAGACAAGGCATTTAATAAGGGTAGCTACTATCCAGTCCTCATAATAAAGAGCAAGTCAATAGCCCGACGGTTTCTGTGACTAAGCGCAGACCAAAACAAACTACTTGCTTACGATGAGAACTAGCAGTAATTTAATCCTCCATACATTCGTTGTACCACATGGTTGGTTTCTCCACAAGGTTTTGTTTCACTTTTGTGGATACTTATTGCTCTTATTGTACACTGAGGTACTGGGAATGAAAGTTAACGTCAATGTCATTGCTTCAGTGCAGACAAATCATTGGAAAGGGTTACAGACTTTTCATGTAGATTGCATGGGTCTGAGCTAACTTTGTGCCAGTCACAACCATCGCGTCATGAACTCAAGAAACTTTATTGTGAAAGATACTGTCGCTGTTGCATATAGAACATTTAAGAGCTCTTGCTGTTTATTCTTCTGATGTTACGTTGATAGTTACATTGACTAACTGCAGTTACTCCGAATGTAAGTAGCGCCACCAAAATGTTTACTGAACTTCCTcctttttcattcattaaaatgtgtgaTTATA

Function

symbol description
slit1a Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within cranial nerve morphogenesis and positive regulation of axon extension. Predicted to be located in extracellular region. Predicted to be active in extracellular space. Is expressed in central nervous system and retinal ganglion cell layer. Orthologous to human SLIT1 (slit guidance ligand 1).
slit1 Enables Roundabout binding activity. Involved in axon extension involved in axon guidance; motor neuron axon guidance; and negative chemotaxis. Predicted to be located in extracellular region. Predicted to be active in extracellular space.

NR:

description
slit homolog 1 protein-like

GO:

id name namespace
GO:0045773 positive regulation of axon extension biological_process
GO:0007411 axon guidance biological_process
GO:0005576 extracellular region cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K06838 SLIT1; slit 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255117.1 True 7184 mRNA 0.50 37 2093475 2146596

Neighbor

gene id symbol gene type direction distance location
nvl nvl,LOC107558213 coding downstream 18697 2060300 ~ 2074778 (-)
heatr5b heatr5b,LOC102314180 coding downstream 56364 2012695 ~ 2037111 (-)
efemp1 efemp1,LOC107753722,LOC107742815,LOC107701580 coding downstream 82081 1997355 ~ 2011394 (-)
vit LOC107680287,LOC107565916,LOC107709440 coding downstream 172850 1899037 ~ 1920625 (-)
si:ch1073-291c23.2 NA coding downstream 215765 1873619 ~ 1877710 (-)
LOC122356487 LOC107654083,LOC107715618,LOC107727478 coding upstream 292610 2439206 ~ 2457063 (-)
LOC122356433 LOC107680168,LOC107571251,LOC107567524,LOC107563091,LOC107676802,LOC107653882,LOC107756192,LOC107560357,LOC107717306 coding upstream 312284 2458880 ~ 2466266 (-)
gsta.1 LOC107701971,LOC107734005 coding upstream 331987 2478583 ~ 2480329 (-)
LOC122356775 gtpbp2,LOC107751133,LOC107701968,LOC107699157 coding upstream 341831 2488427 ~ 2497421 (-)
LOC122356217 LOC107719934,LOC107699158,LOC107597732 coding upstream 460484 2607080 ~ 2608868 (-)
LOC122356492 NA non-coding downstream 38584 2052031 ~ 2054891 (-)
G90150 NA non-coding downstream 39515 2053757 ~ 2053960 (-)
G90078 NA non-coding downstream 185937 1907316 ~ 1907538 (-)
G90076 NA non-coding downstream 205866 1887406 ~ 1887609 (-)
G90074 NA non-coding downstream 221743 1871381 ~ 1871732 (-)
G90166 NA non-coding upstream 3721 2150317 ~ 2166300 (-)
G90168 NA non-coding upstream 5991 2152587 ~ 2155188 (-)
G90180 NA non-coding upstream 44315 2190911 ~ 2192963 (-)
G90193 NA non-coding upstream 67941 2214537 ~ 2215301 (-)
G90196 NA non-coding upstream 71294 2217890 ~ 2218434 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 401121 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 536428 1554230 ~ 1557047 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other downstream 805193 1212870 ~ 1288282 (-)
lrmda c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503 other downstream 1162470 687409 ~ 931005 (-)
LOC122356753 LOC107708390,LOC107678530,LOC107589588,LOC107698143 other downstream 1854116 223958 ~ 239359 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other upstream 5241 2151837 ~ 2245078 (-)
G90304 NA other upstream 437600 2584196 ~ 2585331 (-)
G90311 polh other upstream 479732 2626328 ~ 2627157 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other upstream 843822 2990418 ~ 3244896 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 1134741 3281337 ~ 3298549 (-)

Expression


Co-expression Network