nvl (nvl,LOC107558213)


Basic Information

Item Value
gene id nvl
gene name nvl,LOC107558213
gene type coding
species tiger barb (Puntius tetrazona)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_056711.1
NCBI id CM032080.1
chromosome length 25085836
location 2060300 ~ 2074778 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome

Sequence

>XM_043255159.1
AGACCGTCCTGAGCTCTCCAGGCCTGCGGGCGGCGCTGCGGACACCGGCGCTCAGCTCCTCCCCCTCTCCTCCtcagctcctcctcctccgcgtGCACGGCGGCAGCGTGAAGAAGAGGCGAGCTTTCTCCGGGGCTTCATGAGGACTGAGTGATGAAGAACCGCGGAGCTTGTAACGTAGACCAGAGACTCAAACACAGAGTCGAGCAGTACCTGAAGGGCCACGGCGAGCGGTATGTGGACGTCTCGGCGATGGCCTGCGAGCTCCAGCAGCGCTTCCGGATCGAGTACGGCCGCAGGAACAGGACGGCTTTCCGGATTCAAGTGGAAAAAGCGCATGCGGCGATCTGCAGCGAGTCTGATGTCTCTGTCCTGGAGGACCAGCATTTGGCCAAAAGAGCGAGACGCAAGAGAGAGGACGGGGAAGAAAGTCTCGTCACTGAGAACAGCACAGACAGCGAGGATGATATTCCTGAGCACGAGCACACTAACCACATGAACAGCTCTCTGACCAGCCTCTATCAGAGAGGAGCGACCCCTCAGAAGAGCTGGACCATCGACAAGACCGGAGACCGAGAGCAGGACAACATCTTCATCGATCTGTGTGAGGAAGAGTCCTCCAGCACCGCGAAGCAGAGAGATTCATCGGCGCTGGAGAAGGACAGGAAGTCAGCGAGCAGAAAACTGAAgcgagagaagaagaagaagcagcaggaggaggaggagatcaCTGCGGCGATTCAGGCTAAAAAGAGTAGGAGTCACGAGCTGCAGCACTCGTCGGTGAAGTTCGAGGACTTCGGCGGGAGCGAGGAGACTCTAGAGgAGGTCTGTAAGCTGCTGATCCACATGAGACACCCCGAGGTGTACCAGCGGCTGGGAGTGGTTCCTCCGAGAGGATTCCTGCTGCACGGCCCGCCGGGGTCCGGGAAGACGCTGCTGGCTCAGGCTGTGGCTGGGgaggtGGATCTGCCCATGCTGAAGGTCTCGGCTCCGGAGCTGGTGTCCGGAGTCTCCGGGGAATCGGAGCAGAAGCTGCGGGAGCTGTTTGAGCAAGCCATAAGCAGTGCTCCCTGTATCCTGTTCATCGACGAGATCGATGCCATCACTCCAAAGAGAGAGGTCGCGTCCAAAGACATGGAGAGGAGGATGGTGGCTCAGTTACTCACCTGCATGGACGACCTCAACTCGTTATCAGAACCGGCTCAGGTGTTGGTCATCGGAGCCACTAACCGGCCGGACTCTCTGGACCCGGCCCTGCGCAGAGCCGGCAGGTTTGACCGTGAGATCTGTCTGGGCATTCCTGATGAAGCCGCGAGACTCAAGATCCTGAAGACACTGTGTCGTAAGATGACGCTGCCGGAGGAGTTTGACTACAGACAGCTGGCGCGTCTCACGCCGGGTTTTGTGGGCGCTGATCTGATGGCGCTGTGCCGAGAGGCGGCCATGAGCGCCGTCAACAGGATCCTGCTTCAGCTGAACAGTTCAGACGGCACGCCGCCGAAAGCAGACCTGGAGCAGCTGCTGTCGTTGCTGAAGACGAGCGAGTCTCTGAGCGAGGAGCAgctctctggactctgtgtgcTCATGTCGGACTTCAGGGCGTCGCTCGCCAGAGTCCAGCCGTCTGCCAAGCGCGAGGGCTTCGCCACGGTCCCGGACGTCAGCTGGGAGGACGTGGGAGCGCTGCAGGACGTCCGCGAGGAGCTCAACATGGCCATCATGGCTCCCATCCATAACCCGGATCAGTTCCGAGCGCTGGGTCTGAGCGCCCCGGCTGGAGTGCTGCTGGCCGGACCGCCCGGCTGCGGGAAGACCCTTCTGGCCAAGGCCGTCGCTAATGAATCAGGCCTGAACTTCATCTCTGTCAAGGGTCCTGAGCTGCTCAATATGTATGTGGGCGAGAGCGAGCGGGCGGTCCGCCAGGTGTTCCAGAGAGGACGCAACTCGGCGCCCTGCGTCATCTTCTTTGACGAGATCGATGCGCTGTGTCCTCGCCGCTCCGAGCATGAGtCAGGAGCCAGTGTTCGTGTCGTGAATCAGCTCCTCACTGAGATGGACGGCATGCAGAACCGCCAGCAGGTTTTCATCATGGCCGCCACCAACAGACCAGATATAATTGATCCCGCTGTGCTCAGGCCAGGACGACTGGACAAAACTCTGTATGTGGGTTTACCGCCGGCCGCAGACAGACACGCCATACTAGTCACTATTACTAAGAGCGGCACCAGACCACTTCTAGATTCAGATGTCAGTCTTGAGGAAATTGCCCATGATGCTCGTTGTGAGAGTTTTACaggagCAGATCTGTCGGCGCTGGTGCGAGAGGCGTGTGTAAACGCTCTGAGAGGTCACCTGAGCTCAggaccagcacacacacacacagAGCCAGTGAAGGACATCCGAGTGAGCCGAGTTCACTTTGAAGACGCCTTCAAGAAGGTGCGGCCGTCGGTCTCCAAGAAGGACCAGTTAATGTATGAAAAACTGAAAGAGAGCCTCACAAGAtgacagctattttttttttgatattctgtgcttaaaaaaataaatagaaagaaaataacCTGGCTGTGCATTTGTCTGGATTTCACCAACATTACTTTACATGAAAGATTGTAATGAAGTTATACGCAATAAagtgtatgtaaaaaaataaatacgtttgTTACACAGCAGATTACGTGAAGATGAACAGTAACGGTCAAGATCTTGACAATTTGTACAAAAACCTGATTAAGTAGGAGAAAAGTAGATTGCCTGTTGTTTTTGGACCAGTATCTTATAGTGACTGAA
>XM_043255160.1
CGAAAGACCGTCCTGAGCTCTCCAGGCCTGCGGGCGGCGCTGCGGACACCGGCGCTCAGCTCCTCCCCCTCTCCTCCtcagctcctcctcctccgcgtGCACGGCGGCAGCGTGAAGAAGAGGCGAGCTTTCTCCGGGGCTTCATGAGGACTGAGTGATGAAGAACCGCGGAGCTTGTAACGTAGACCAGAGACTCAAACACAGAGTCGAGCAGTACCTGAAGGGCCACGGCGAGCGGTATGTGGACGTCTCGGCGATGGCCTGCGAGCTCCAGCAGCGCTTCCGGATCGAGTACGGCCGCAGGAACAGGACGGCTTTCCGGATTCAAGTGGAAAAAGCGCATGCGGCGATCTGCAGCGAGTCTGATGTCTCTGTCCTGGAGGACCAGCATTTGGCCAAAAGAGCGAGACGCAAGAGAGAGGACGGGGAAGAAAGTCTCGTCACTGAGAACAGCACAGACAGCGAGGATGATATTCCTGAGCACGAGCACACTAACCACATGAACAGCTCTCTGACCAGCCTCTATCAGAGAGGAGCGACCCCTCAGAAGAGCTGGACCATCGACAAGACCGGAGACCGAGAGCAGGACAACATCTTCATCGATCTGTGTGAGGAAGAGTCCTCCAGCACCGCGCAGAGAGATTCATCGGCGCTGGAGAAGGACAGGAAGTCAGCGAGCAGAAAACTGAAgcgagagaagaagaagaagcagcaggaggaggaggagatcaCTGCGGCGATTCAGGCTAAAAAGAGTAGGAGTCACGAGCTGCAGCACTCGTCGGTGAAGTTCGAGGACTTCGGCGGGAGCGAGGAGACTCTAGAGgAGGTCTGTAAGCTGCTGATCCACATGAGACACCCCGAGGTGTACCAGCGGCTGGGAGTGGTTCCTCCGAGAGGATTCCTGCTGCACGGCCCGCCGGGGTCCGGGAAGACGCTGCTGGCTCAGGCTGTGGCTGGGgaggtGGATCTGCCCATGCTGAAGGTCTCGGCTCCGGAGCTGGTGTCCGGAGTCTCCGGGGAATCGGAGCAGAAGCTGCGGGAGCTGTTTGAGCAAGCCATAAGCAGTGCTCCCTGTATCCTGTTCATCGACGAGATCGATGCCATCACTCCAAAGAGAGAGGTCGCGTCCAAAGACATGGAGAGGAGGATGGTGGCTCAGTTACTCACCTGCATGGACGACCTCAACTCGTTATCAGAACCGGCTCAGGTGTTGGTCATCGGAGCCACTAACCGGCCGGACTCTCTGGACCCGGCCCTGCGCAGAGCCGGCAGGTTTGACCGTGAGATCTGTCTGGGCATTCCTGATGAAGCCGCGAGACTCAAGATCCTGAAGACACTGTGTCGTAAGATGACGCTGCCGGAGGAGTTTGACTACAGACAGCTGGCGCGTCTCACGCCGGGTTTTGTGGGCGCTGATCTGATGGCGCTGTGCCGAGAGGCGGCCATGAGCGCCGTCAACAGGATCCTGCTTCAGCTGAACAGTTCAGACGGCACGCCGCCGAAAGCAGACCTGGAGCAGCTGCTGTCGTTGCTGAAGACGAGCGAGTCTCTGAGCGAGGAGCAgctctctggactctgtgtgcTCATGTCGGACTTCAGGGCGTCGCTCGCCAGAGTCCAGCCGTCTGCCAAGCGCGAGGGCTTCGCCACGGTCCCGGACGTCAGCTGGGAGGACGTGGGAGCGCTGCAGGACGTCCGCGAGGAGCTCAACATGGCCATCATGGCTCCCATCCATAACCCGGATCAGTTCCGAGCGCTGGGTCTGAGCGCCCCGGCTGGAGTGCTGCTGGCCGGACCGCCCGGCTGCGGGAAGACCCTTCTGGCCAAGGCCGTCGCTAATGAATCAGGCCTGAACTTCATCTCTGTCAAGGGTCCTGAGCTGCTCAATATGTATGTGGGCGAGAGCGAGCGGGCGGTCCGCCAGGTGTTCCAGAGAGGACGCAACTCGGCGCCCTGCGTCATCTTCTTTGACGAGATCGATGCGCTGTGTCCTCGCCGCTCCGAGCATGAGtCAGGAGCCAGTGTTCGTGTCGTGAATCAGCTCCTCACTGAGATGGACGGCATGCAGAACCGCCAGCAGGTTTTCATCATGGCCGCCACCAACAGACCAGATATAATTGATCCCGCTGTGCTCAGGCCAGGACGACTGGACAAAACTCTGTATGTGGGTTTACCGCCGGCCGCAGACAGACACGCCATACTAGTCACTATTACTAAGAGCGGCACCAGACCACTTCTAGATTCAGATGTCAGTCTTGAGGAAATTGCCCATGATGCTCGTTGTGAGAGTTTTACaggagCAGATCTGTCGGCGCTGGTGCGAGAGGCGTGTGTAAACGCTCTGAGAGGTCACCTGAGCTCAggaccagcacacacacacacagAGCCAGTGAAGGACATCCGAGTGAGCCGAGTTCACTTTGAAGACGCCTTCAAGAAGGTGCGGCCGTCGGTCTCCAAGAAGGACCAGTTAATGTATGAAAAACTGAAAGAGAGCCTCACAAGAtgacagctattttttttttgatattctgtgcttaaaaaaataaatagaaagaaaataacCTGGCTGTGCATTTGTCTGGATTTCACCAACATTACTTTACATGAAAGATTGTAATGAAGTTATACGCAATAAagtgtatgtaaaaaaataaatacgtttgTTACACAGCAGATTACGTGAAGATGAACAGTAACGGTCAAGATCTTGACAATTTGTACAAAAACCTGATTAAGTAGGAGAAAAGTAGATTGCCTGTTGTTTTTGGACCAGTATCTTATAGTGACTGAAA

Function

symbol description
nvl Predicted to enable ATP hydrolysis activity and preribosome binding activity. Predicted to be involved in positive regulation of telomerase activity and ribosome biogenesis. Predicted to be active in nucleus. Orthologous to human NVL (nuclear VCP like).

NR:

description
nuclear valosin-containing protein-like isoform X1

GO:

id name namespace
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG:

id description
K14571 RIX7, NVL; ribosome biogenesis ATPase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_043255159.1 False 2796 mRNA 0.56 23 2060301 2074774
XM_043255160.1 True 2798 mRNA 0.56 23 2060300 2074778

Neighbor

gene id symbol gene type direction distance location
heatr5b heatr5b,LOC102314180 coding downstream 23189 2012695 ~ 2037111 (-)
efemp1 efemp1,LOC107753722,LOC107742815,LOC107701580 coding downstream 48906 1997355 ~ 2011394 (-)
vit LOC107680287,LOC107565916,LOC107709440 coding downstream 139675 1899037 ~ 1920625 (-)
si:ch1073-291c23.2 NA coding downstream 182590 1873619 ~ 1877710 (-)
ddx21 ddx21,LOC107680284,LOC107709417,LOC107693788,LOC107725010,LOC107565900 coding downstream 189023 1864531 ~ 1871277 (-)
slit1a slit1,slit1a,LOC107699140,LOC107753728,LOC107705008,LOC107565895 coding upstream 18697 2093475 ~ 2146596 (-)
LOC122356487 LOC107654083,LOC107715618,LOC107727478 coding upstream 364428 2439206 ~ 2457063 (-)
LOC122356433 LOC107680168,LOC107571251,LOC107567524,LOC107563091,LOC107676802,LOC107653882,LOC107756192,LOC107560357,LOC107717306 coding upstream 384102 2458880 ~ 2466266 (-)
gsta.1 LOC107701971,LOC107734005 coding upstream 403805 2478583 ~ 2480329 (-)
LOC122356775 gtpbp2,LOC107751133,LOC107701968,LOC107699157 coding upstream 413649 2488427 ~ 2497421 (-)
LOC122356492 NA non-coding downstream 5409 2052031 ~ 2054891 (-)
G90150 NA non-coding downstream 6340 2053757 ~ 2053960 (-)
G90078 NA non-coding downstream 152762 1907316 ~ 1907538 (-)
G90076 NA non-coding downstream 172691 1887406 ~ 1887609 (-)
G90074 NA non-coding downstream 188568 1871381 ~ 1871732 (-)
G90166 NA non-coding upstream 75539 2150317 ~ 2166300 (-)
G90168 NA non-coding upstream 77809 2152587 ~ 2155188 (-)
G90180 NA non-coding upstream 116133 2190911 ~ 2192963 (-)
G90193 NA non-coding upstream 139759 2214537 ~ 2215301 (-)
G90196 NA non-coding upstream 143112 2217890 ~ 2218434 (-)
LOC122356758 ccdc88a,LOC107571560,LOC107701441,LOC107570323,LOC107695193 other downstream 367946 1684449 ~ 1692354 (-)
LOC122356439 LOC107747448,LOC107690165,LOC107678593,LOC107582517,LOC107576986,LOC107708380 other downstream 503253 1554230 ~ 1557047 (-)
si:dkey-228d14.5 si:dkey-228d14.5,LOC107747455,LOC107582513,LOC107708394,LOC107589525,LOC107678589,LOC107690177 other downstream 772018 1212870 ~ 1288282 (-)
lrmda c13h10orf11,cunh10orf11,c3h10orf11,cssa18h10orf11,LOC107747465,LOC107678567,LOC107708444,LOC105909757,LOC103041229,LOC107582503 other downstream 1129295 687409 ~ 931005 (-)
LOC122356753 LOC107708390,LOC107678530,LOC107589588,LOC107698143 other downstream 1820941 223958 ~ 239359 (-)
G90161 tp53bp2,LOC107582030,LOC107705014,LOC107742808 other upstream 77059 2151837 ~ 2245078 (-)
G90304 NA other upstream 509418 2584196 ~ 2585331 (-)
G90311 polh other upstream 551550 2626328 ~ 2627157 (-)
G90445 znf318,LOC107739464,LOC107655625,LOC107728066,LOC107559766 other upstream 915640 2990418 ~ 3244896 (-)
dlk2 dlk2,LOC107669558,LOC107696386,LOC107559779,LOC107728069 other upstream 1206559 3281337 ~ 3298549 (-)

Expression


Co-expression Network